SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    62401 1x8j:B (2.35) BS02 CA ? GO:0008146 ... Q26490 15608121
    62402 1x8j:B (2.35) BS03 AOI ? GO:0008146 ... Q26490 15608121 MOAD: Ki=0.11uM
    62403 1x8k:A (2.75) BS01 CA ? GO:0008146 ... Q26490 15608121
    62404 1x8k:A (2.75) BS02 ANR ? GO:0008146 ... Q26490 15608121
    62405 1x8k:A (2.75) BS03 A3P ? GO:0008146 ... Q26490 15608121
    62406 1x8k:B (2.75) BS01 CA ? GO:0008146 ... Q26490 15608121
    62407 1x8k:B (2.75) BS02 A3P ? GO:0008146 ... Q26490 15608121
    62408 1x8k:B (2.75) BS03 ANR ? GO:0008146 ... Q26490 15608121
    62409 1x8l:A (2.1) BS01 CA ? GO:0008146 ... Q26490 15608121
    62410 1x8l:A (2.1) BS02 OXR ? GO:0008146 ... Q26490 15608121
    62411 1x8l:A (2.1) BS03 A3P ? GO:0008146 ... Q26490 15608121
    62412 1x8l:B (2.1) BS01 CA ? GO:0008146 ... Q26490 15608121
    62413 1x8l:B (2.1) BS02 A3P ? GO:0008146 ... Q26490 15608121
    62414 1x8l:B (2.1) BS03 OXR ? GO:0008146 ... Q26490 15608121
    62415 1x8n:A (1.08) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 15504026
    62416 1x8o:A (1.01) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 15504026
    62417 1x8o:A (1.01) BS02 NO 1.7.6.1 GO:0005576 ... Q94734 15504026
    62418 1x8p:A (0.85) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 15504026
    62419 1x8q:A (0.85) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 15504026
    62420 1x8r:A (1.5) BS01 SC1 2.5.1.19 GO:0003824 ... P0A6D3 15736934 MOAD: Ki=2.9uM
    BindingDB: Kd=15nM, Ki=15nM
    62421 1x8s:A (2.503) BS01 peptide ? N/A O97111 15475968
    62422 1x8t:A (1.9) BS01 RC1 2.5.1.19 GO:0003824 ... P0A6D3 15736934 MOAD: Ki=16nM
    62423 1x8u:A (2.2) BS01 CM2 ? GO:0002020 ... P80188 15642259
    62424 1x8u:B (2.2) BS01 CM2 ? GO:0002020 ... P80188 15642259
    62425 1x8u:C (2.2) BS01 CM2 ? GO:0002020 ... P80188 15642259
    62426 1x8v:A (1.55) BS01 HEM 1.14.15.36 GO:0004497 ... P9WPP9 15530358
    62427 1x8v:A (1.55) BS02 ESL 1.14.15.36 GO:0004497 ... P9WPP9 15530358 MOAD: Kd=100uM
    62428 1x8v:A (1.55) BS03 ESL 1.14.15.36 GO:0004497 ... P9WPP9 15530358 MOAD: Kd=100uM
    62429 1x8x:A (2.0) BS01 TYR 6.1.1.1 GO:0000166 ... P0AGJ9 15663931
    62430 1x92:A (2.3) BS01 M7P 5.3.1.28 GO:0005737 ... Q9HVZ0 18056714
    62431 1x92:B (2.3) BS01 M7P 5.3.1.28 GO:0005737 ... Q9HVZ0 18056714
    62432 1x96:A (1.4) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 15317464
    62433 1x97:A (1.4) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 15317464
    62434 1x97:A (1.4) BS02 FIR 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 15317464 MOAD: ic50=0.57uM
    BindingDB: IC50=570nM
    62435 1x98:A (1.3) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 15317464
    62436 1x9d:A (1.41) BS01 Z5L 3.2.1.113 GO:0004571 ... Q9UKM7 15713668
    62437 1x9d:A (1.41) BS02 MAN 3.2.1.113 GO:0004571 ... Q9UKM7 15713668
    62438 1x9f:A (2.6) BS01 HEM ? GO:0005506 ... P13579 15504406
    62439 1x9f:A (2.6) BS02 HEM ? GO:0005506 ... P13579 15504406
    62440 1x9f:B (2.6) BS01 HEM ? GO:0005506 ... P02218 15504406
    62441 1x9f:C (2.6) BS01 HEM ? GO:0005506 ... P11069 15504406
    62442 1x9f:C (2.6) BS02 HEM ? GO:0005506 ... P11069 15504406
    62443 1x9f:D (2.6) BS01 HEM ? GO:0005344 ... O61233 15504406
    62444 1x9f:E (2.6) BS01 HEM ? GO:0005506 ... P13579 15504406
    62445 1x9f:E (2.6) BS02 HEM ? GO:0005506 ... P13579 15504406
    62446 1x9f:F (2.6) BS01 HEM ? GO:0005506 ... P02218 15504406
    62447 1x9f:G (2.6) BS01 HEM ? GO:0005506 ... P11069 15504406
    62448 1x9f:H (2.6) BS01 HEM ? GO:0005344 ... O61233 15504406
    62449 1x9f:H (2.6) BS02 HEM ? GO:0005344 ... O61233 15504406
    62450 1x9f:I (2.6) BS01 HEM ? GO:0005506 ... P13579 15504406
    62451 1x9f:I (2.6) BS02 HEM ? GO:0005506 ... P13579 15504406
    62452 1x9f:J (2.6) BS01 HEM ? GO:0005506 ... P02218 15504406
    62453 1x9f:K (2.6) BS01 HEM ? GO:0005506 ... P11069 15504406
    62454 1x9f:L (2.6) BS01 HEM ? GO:0005344 ... O61233 15504406
    62455 1x9h:A (1.5) BS01 F6R 5.3.1.8
    5.3.1.9
    GO:0004347 ... Q8ZWV0 15518558
    62456 1x9h:B (1.5) BS01 F6R 5.3.1.8
    5.3.1.9
    GO:0004347 ... Q8ZWV0 15518558
    62457 1x9i:A (1.16) BS01 G6Q 5.3.1.8
    5.3.1.9
    GO:0004347 ... Q8ZWV0 15518558
    62458 1x9i:B (1.16) BS01 G6Q 5.3.1.8
    5.3.1.9
    GO:0004347 ... Q8ZWV0 15518558
    62459 1x9l:A (-1.00) BS01 CU1 ? N/A Q9RT80 15753304
    62460 1x9m:A (2.1) BS01 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15528277
    62461 1x9m:A (2.1) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15528277
    62462 1x9n:A (3.0) BS01 dna 6.5.1.1 GO:0003677 ... P18858 15565146
    62463 1x9n:A (3.0) BS02 dna 6.5.1.1 GO:0003677 ... P18858 15565146
    62464 1x9n:A (3.0) BS03 dna 6.5.1.1 GO:0003677 ... P18858 15565146
    62465 1x9n:A (3.0) BS04 AMP 6.5.1.1 GO:0003677 ... P18858 15565146
    62466 1x9p:A (3.3) BS01 C15 ? GO:0005198 ... P03276 15629723
    62467 1x9p:A (3.3) BS02 C15 ? GO:0005198 ... P03276 15629723
    62468 1x9q:A (1.5) BS01 FLU N/A N/A N/A 15465055 MOAD: Kd=0.27pM
    62469 1x9r:A (1.9) BS01 CU ? GO:0005886 ... P42849 15631465
    62470 1x9r:B (1.9) BS01 CU ? GO:0005886 ... P42849 15631465
    62471 1x9s:A (2.7) BS01 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15528277
    62472 1x9s:A (2.7) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15528277
    62473 1x9t:A (3.5) BS01 peptide ? GO:0005198 ... P03276 15629723
    62474 1x9t:A (3.5) BS02 C15 ? GO:0005198 ... P03276 15629723
    62475 1x9t:A (3.5) BS03 C15 ? GO:0005198 ... P03276 15629723
    62476 1x9u:A (1.8) BS01 CU ? GO:0005886 ... P42849 15631465
    62477 1x9u:B (1.8) BS01 CU ? GO:0005886 ... P42849 15631465
    62478 1x9w:A (2.3) BS01 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15528277
    62479 1x9w:A (2.3) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 15528277
    62480 1xa1:A (1.8) BS01 POP ? GO:0008658 ... P18357 15322076
    62481 1xa1:B (1.8) BS01 POP ? GO:0008658 ... P18357 15322076
    62482 1xa1:C (1.8) BS01 POP ? GO:0008658 ... P18357 15322076
    62483 1xa1:D (1.8) BS01 POP ? GO:0008658 ... P18357 15322076
    62484 1xa4:B (1.9) BS01 COA 2.8.3.21 GO:0003824 ... P31572 15518548
    62485 1xa5:A (2.12) BS01 CA ? GO:0000922 ... P62157 15596444
    62486 1xa5:A (2.12) BS02 CA ? GO:0000922 ... P62157 15596444
    62487 1xa5:A (2.12) BS03 CA ? GO:0000922 ... P62157 15596444
    62488 1xa5:A (2.12) BS04 CA ? GO:0000922 ... P62157 15596444
    62489 1xa5:A (2.12) BS05 KAR ? GO:0000922 ... P62157 15596444 MOAD: Kd=316nM
    62490 1xa6:A (3.2) BS01 ZN ? GO:0001675 ... P52757 15507211
    62491 1xa6:A (3.2) BS02 ZN ? GO:0001675 ... P52757 15507211
    62492 1xa7:A (2.4) BS01 PNM ? GO:0008658 ... P18357 15322076
    62493 1xa7:B (2.4) BS01 PNM ? GO:0008658 ... P18357 15322076
    62494 1xa8:A (2.4) BS01 ZN 4.4.1.22 GO:0008270 ... Q51669 15548539
    62495 1xa8:A (2.4) BS02 GSH 4.4.1.22 GO:0008270 ... Q51669 15548539
    62496 1xa8:B (2.4) BS01 ZN 4.4.1.22 GO:0008270 ... Q51669 15548539
    62497 1xa8:B (2.4) BS02 GSH 4.4.1.22 GO:0008270 ... Q51669 15548539
    62498 1xa8:C (2.4) BS01 ZN 4.4.1.22 GO:0008270 ... Q51669 15548539
    62499 1xa8:C (2.4) BS02 GSH 4.4.1.22 GO:0008270 ... Q51669 15548539
    62500 1xa8:D (2.4) BS01 ZN 4.4.1.22 GO:0008270 ... Q51669 15548539
    62501 1xa8:D (2.4) BS02 GSH 4.4.1.22 GO:0008270 ... Q51669 15548539
    62502 1xaf:A (2.01) BS01 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4
    GO:0004000 ... A0A384KG77 16498617
    62503 1xaf:A (2.01) BS02 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4
    GO:0004000 ... A0A384KG77 16498617
    62504 1xaf:B (2.01) BS01 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4
    GO:0004000 ... A0A384KG77 16498617
    62505 1xaf:B (2.01) BS02 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4
    GO:0004000 ... A0A384KG77 16498617
    62506 1xag:A (2.45) BS01 ZN 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62507 1xag:A (2.45) BS02 NAD 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62508 1xag:A (2.45) BS03 CRB 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62509 1xah:A (2.2) BS01 ZN 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62510 1xah:A (2.2) BS02 NAD 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62511 1xah:B (2.2) BS01 ZN 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62512 1xah:B (2.2) BS02 NAD 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62513 1xai:A (2.3) BS01 ZN 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62514 1xai:A (2.3) BS02 CRB 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62515 1xai:B (2.3) BS01 ZN 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62516 1xai:B (2.3) BS02 CRB 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62517 1xaj:A (2.35) BS01 ZN 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62518 1xaj:A (2.35) BS02 NAD 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62519 1xaj:A (2.35) BS03 CRB 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62520 1xaj:B (2.35) BS01 ZN 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62521 1xaj:B (2.35) BS02 NAD 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62522 1xaj:B (2.35) BS03 CRB 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62523 1xal:A (2.8) BS01 ZN 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62524 1xal:A (2.8) BS02 NAD 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62525 1xal:A (2.8) BS03 CRB 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62526 1xal:B (2.8) BS01 ZN 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62527 1xal:B (2.8) BS02 NAD 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62528 1xal:B (2.8) BS03 CRB 4.2.3.4 GO:0003856 ... Q6GGU4 15465043
    62529 1xan:A (2.0) BS01 FAD 1.8.1.7 GO:0004362 ... P00390 8626496
    62530 1xan:A (2.0) BS02 HXP 1.8.1.7 GO:0004362 ... P00390 8626496
    62531 1xap:A (2.1) BS01 TTB ? GO:0003677 ... P10826 15319780 MOAD: Kd=2.5nM
    BindingDB: EC50=4nM, Ki=0.500000nM, Kd=5nM, IC50=5nM
    62532 1xb0:A (2.2) BS01 peptide ? N/A Q96P09 15485395
    62533 1xb0:A (2.2) BS02 ZN ? N/A Q96P09 15485395
    62534 1xb0:A (2.2) BS03 ZN ? N/A Q96P09 15485395
    62535 1xb0:B (2.2) BS01 peptide ? N/A Q96P09 15485395
    62536 1xb0:B (2.2) BS02 ZN ? N/A Q96P09 15485395
    62537 1xb0:B (2.2) BS03 ZN ? N/A Q96P09 15485395
    62538 1xb0:B (2.2) BS04 ZN ? N/A Q96P09 15485395
    62539 1xb0:C (2.2) BS01 peptide ? N/A Q96P09 15485395
    62540 1xb0:C (2.2) BS02 ZN ? N/A Q96P09 15485395
    62541 1xb0:C (2.2) BS03 ZN ? N/A Q96P09 15485395
    62542 1xb0:D (2.2) BS01 peptide ? N/A Q96P09 15485395
    62543 1xb0:D (2.2) BS02 ZN ? N/A Q96P09 15485395
    62544 1xb0:D (2.2) BS03 ZN ? N/A Q96P09 15485395
    62545 1xb0:E (2.2) BS01 peptide ? N/A Q96P09 15485395
    62546 1xb0:E (2.2) BS02 ZN ? N/A Q96P09 15485395
    62547 1xb0:E (2.2) BS03 ZN ? N/A Q96P09 15485395
    62548 1xb0:F (2.2) BS01 peptide ? N/A Q96P09 15485395
    62549 1xb0:F (2.2) BS02 ZN ? N/A Q96P09 15485395
    62550 1xb0:F (2.2) BS03 ZN ? N/A Q96P09 15485395
    62551 1xb0:F (2.2) BS04 ZN ? N/A Q96P09 15485395
    62552 1xb1:A (2.7) BS01 peptide ? N/A Q96P09 15485395
    62553 1xb1:A (2.7) BS02 ZN ? N/A Q96P09 15485395
    62554 1xb1:A (2.7) BS03 ZN ? N/A Q96P09 15485395
    62555 1xb1:B (2.7) BS01 peptide ? N/A Q96P09 15485395
    62556 1xb1:B (2.7) BS02 ZN ? N/A Q96P09 15485395
    62557 1xb1:B (2.7) BS03 ZN ? N/A Q96P09 15485395
    62558 1xb1:C (2.7) BS01 peptide ? N/A Q96P09 15485395
    62559 1xb1:C (2.7) BS02 ZN ? N/A Q96P09 15485395
    62560 1xb1:C (2.7) BS03 ZN ? N/A Q96P09 15485395
    62561 1xb1:D (2.7) BS01 peptide ? N/A Q96P09 15485395
    62562 1xb1:D (2.7) BS02 ZN ? N/A Q96P09 15485395
    62563 1xb1:D (2.7) BS03 ZN ? N/A Q96P09 15485395
    62564 1xb1:E (2.7) BS01 peptide ? N/A Q96P09 15485395
    62565 1xb1:E (2.7) BS02 ZN ? N/A Q96P09 15485395
    62566 1xb1:E (2.7) BS03 ZN ? N/A Q96P09 15485395
    62567 1xb1:E (2.7) BS04 ZN ? N/A Q96P09 15485395
    62568 1xb1:F (2.7) BS01 peptide ? N/A Q96P09 15485395
    62569 1xb1:F (2.7) BS02 ZN ? N/A Q96P09 15485395
    62570 1xb1:F (2.7) BS03 ZN ? N/A Q96P09 15485395
    62571 1xb3:A (1.501) BS01 CU ? GO:0005507 ... P00282 15449946
    62572 1xb3:B (1.501) BS01 CU ? GO:0005507 ... P00282 15449946
    62573 1xb6:A (1.823) BS01 CU ? GO:0005507 ... P00282 15449946
    62574 1xb6:B (1.823) BS01 CU ? GO:0005507 ... P00282 15449946
    62575 1xb7:A (2.5) BS01 peptide ? N/A P11474 15337744
    62576 1xb8:A (2.0) BS01 ZN ? GO:0005507 ... P00282 15449946
    62577 1xb8:C (2.0) BS01 ZN ? GO:0005507 ... P00282 15449946
    62578 1xbb:A (1.57) BS01 STI 2.7.10.2 GO:0004672 ... P43405 15507431 MOAD: Ki=5uM
    BindingDB: Ki=5000nM, Kd=>10000nM, IC50=>10000nM
    62579 1xbc:A (2.0) BS01 STU 2.7.10.2 GO:0004672 ... P43405 15507431 MOAD: ic50=0.012uM
    62580 1xbn:A (2.5) BS01 OXY ? GO:0020037 ... Q8RBX6 15472039
    62581 1xbn:A (2.5) BS02 HEM ? GO:0020037 ... Q8RBX6 15472039
    62582 1xbo:A (2.5) BS01 IX1 3.1.3.48 GO:0004725 ... P18031 15482920 MOAD: Ki=0.92uM
    BindingDB: IC50=920nM
    62583 1xbp:A (3.5) BS01 rna ? GO:0002181 ... Q9RXJ9 15554968
    62584 1xbp:B (3.5) BS01 rna ? GO:0003735 ... Q9RXK2 15554968
    62585 1xbp:C (3.5) BS01 rna ? GO:0003735 ... Q9RXK1 15554968
    62586 1xbp:G (3.5) BS01 rna ? GO:0003735 ... Q9RSS7 15554968
    62587 1xbp:H (3.5) BS01 rna ? GO:0003729 ... Q9RXY1 15554968
    62588 1xbp:I (3.5) BS01 rna ? GO:0003735 ... Q9RXJ2 15554968
    62589 1xbp:J (3.5) BS01 rna ? GO:0003735 ... Q9RSK9 15554968
    62590 1xbp:L (3.5) BS01 rna ? GO:0003735 ... Q9RSJ5 15554968
    62591 1xbp:O (3.5) BS01 rna ? GO:0000027 ... Q9RSW7 15554968
    62592 1xbp:P (3.5) BS01 rna ? GO:0003723 ... Q9RY64 15554968
    62593 1xbp:Q (3.5) BS01 rna ? GO:0003735 ... Q9RXJ7 15554968
    62594 1xbp:R (3.5) BS01 rna ? GO:0003735 ... Q9RXK0 15554968
    62595 1xbp:T (3.5) BS01 rna ? GO:0003723 ... Q9RX88 15554968
    62596 1xbp:X (3.5) BS01 rna ? GO:0003735 ... Q9RSL0 15554968
    62597 1xbp:Y (3.5) BS01 rna ? GO:0003735 ... Q9RW44 15554968
    62598 1xbp:Z (3.5) BS01 rna ? GO:0003735 ... P49228 15554968
    62599 1xbr:A (2.5) BS01 dna ? GO:0000978 ... P24781 9349824
    62600 1xbr:A (2.5) BS02 dna ? GO:0000978 ... P24781 9349824

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).