SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    628001 7f0l:X (2.94) BS01 BCL ? GO:0005886 ... P13402 34728609
    628002 7f0l:X (2.94) BS02 SPO ? GO:0005886 ... P13402 34728609
    628003 7f0l:Y (2.94) BS01 SPO ? GO:0005886 ... Q3J1A4 34728609
    628004 7f0l:Y (2.94) BS02 BCL ? GO:0005886 ... Q3J1A4 34728609
    628005 7f0l:Y (2.94) BS03 BCL ? GO:0005886 ... Q3J1A4 34728609
    628006 7f0l:Y (2.94) BS04 BCL ? GO:0005886 ... Q3J1A4 34728609
    628007 7f0l:Y (2.94) BS05 SPO ? GO:0005886 ... Q3J1A4 34728609
    628008 7f0l:Z (2.94) BS01 SPO ? GO:0005886 ... Q3J1A3 34728609
    628009 7f0l:Z (2.94) BS02 SPO ? GO:0005886 ... Q3J1A3 34728609
    628010 7f0l:Z (2.94) BS03 BCL ? GO:0005886 ... Q3J1A3 34728609
    628011 7f0l:Z (2.94) BS04 BCL ? GO:0005886 ... Q3J1A3 34728609
    628012 7f0m:A (1.9) BS01 0BF 5.2.1.8 GO:0000413 ... Q13526 35089030
    628013 7f0m:B (1.9) BS01 0BF 5.2.1.8 GO:0000413 ... Q13526 35089030
    628014 7f0m:B (1.9) BS02 0BF 5.2.1.8 GO:0000413 ... Q13526 35089030
    628015 7f0m:C (1.9) BS01 0BF 5.2.1.8 GO:0000413 ... Q13526 35089030
    628016 7f0m:C (1.9) BS02 0BF 5.2.1.8 GO:0000413 ... Q13526 35089030
    628017 7f0m:D (1.9) BS01 0BF 5.2.1.8 GO:0000413 ... Q13526 35089030
    628018 7f0n:A (1.6) BS01 MG ? N/A P62979 N/A
    628019 7f0r:C (5.8) BS01 dna 2.7.7.6 GO:0000428 ... Q51561 35859063
    628020 7f0r:D (5.8) BS01 dna 2.7.7.6 GO:0000287 ... Q9HWC9 35859063
    628021 7f0r:D (5.8) BS02 dna 2.7.7.6 GO:0000287 ... Q9HWC9 35859063
    628022 7f0r:D (5.8) BS03 ZN 2.7.7.6 GO:0000287 ... Q9HWC9 35859063
    628023 7f0r:D (5.8) BS04 MG 2.7.7.6 GO:0000287 ... Q9HWC9 35859063
    628024 7f0r:F (5.8) BS01 dna ? GO:0003677 ... P45684 35859063
    628025 7f0r:F (5.8) BS02 dna ? GO:0003677 ... P45684 35859063
    628026 7f0t:F (3.1) BS01 LDP ? GO:0001588 ... P21728 35687690
    628027 7f0u:A (2.2) BS01 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13
    GO:0006508 ... A0A075ECV2 34643430
    628028 7f0u:B (2.2) BS01 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13
    GO:0006508 ... A0A075ECV2 34643430
    628029 7f0v:A (1.494) BS01 CU 1.16.3.4 GO:0005507 ... P36649 N/A
    628030 7f0v:A (1.494) BS02 CU 1.16.3.4 GO:0005507 ... P36649 N/A
    628031 7f0v:B (1.494) BS01 CU 1.16.3.4 GO:0005507 ... P36649 N/A
    628032 7f0v:B (1.494) BS02 CU 1.16.3.4 GO:0005507 ... P36649 N/A
    628033 7f0w:A (1.39) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 N/A
    628034 7f0y:A (1.6) BS01 0BJ 1.-.-.- GO:0004497 ... A0A2I1C3W8 34180120
    628035 7f0y:B (1.6) BS01 0BJ 1.-.-.- GO:0004497 ... A0A2I1C3W8 34180120
    628036 7f10:B (1.65) BS01 0BJ 1.-.-.- GO:0004497 ... A0A2I1C3W8 34180120
    628037 7f11:B (1.6) BS01 0ER 1.-.-.- GO:0004497 ... A0A2I1C3W8 34180120
    628038 7f14:A (2.4) BS01 0BJ N/A N/A N/A 34180120
    628039 7f14:B (2.4) BS01 0BJ N/A N/A N/A 34180120
    628040 7f16:R (2.8) BS01 CLR ? GO:0004888 ... P49190 34353904
    628041 7f16:R (2.8) BS02 CLR ? GO:0004888 ... P49190 34353904
    628042 7f19:A (1.773) BS01 CU 1.16.3.4 GO:0005507 ... P36649 N/A
    628043 7f19:A (1.773) BS02 CU 1.16.3.4 GO:0005507 ... P36649 N/A
    628044 7f1a:B (1.9) BS01 GTP N/A GO:0003924 ... N/A 35333570
    628045 7f1a:B (1.9) BS02 GDP N/A GO:0003924 ... N/A 35333570
    628046 7f1b:A (2.4) BS01 GDP N/A GO:0003924 ... N/A 35333570
    628047 7f1d:A (2.05) BS01 0QQ 3.4.23.46 GO:0004190 ... P56817 34553947
    628048 7f1e:A (2.589) BS01 SAM 2.1.1.- GO:0005515 ... Q8TCB7 34922197
    628049 7f1e:B (2.589) BS01 SAM 2.1.1.- GO:0005515 ... Q8TCB7 34922197
    628050 7f1g:A (1.5) BS01 0QQ 3.4.23.45 GO:0004190 ... Q9Y5Z0 34553947
    628051 7f1m:A (3.1) BS01 rna ? GO:0019013 ... Q1PD53 35246537
    628052 7f1m:B (3.1) BS01 rna ? GO:0019013 ... Q1PD53 35246537
    628053 7f1n:A (2.14) BS01 MG ? GO:0004553 ... A0A256XQM7 34659150
    628054 7f1n:B (2.14) BS01 MG ? GO:0004553 ... A0A256XQM7 34659150
    628055 7f1o:A (3.13) BS01 GDP ? GO:0003924 ... P63092 35687690
    628056 7f1o:F (3.13) BS01 LDP ? GO:0001588 ... P21728 35687690
    628057 7f1t:A (2.6) BS01 ZN ? GO:0000165 ... P00268
    P10147
    P51681
    34230484
    628058 7f1u:A (2.4) BS01 3LM 4.4.1.11
    4.4.1.2
    GO:0005737 ... P13254 34953671
    628059 7f1u:B (2.4) BS01 3LM 4.4.1.11
    4.4.1.2
    GO:0005737 ... P13254 34953671
    628060 7f1u:B (2.4) BS02 MET 4.4.1.11
    4.4.1.2
    GO:0005737 ... P13254 34953671
    628061 7f1u:C (2.4) BS01 3LM 4.4.1.11
    4.4.1.2
    GO:0005737 ... P13254 34953671
    628062 7f1u:C (2.4) BS02 3LM 4.4.1.11
    4.4.1.2
    GO:0005737 ... P13254 34953671
    628063 7f1u:D (2.4) BS01 3LM 4.4.1.11
    4.4.1.2
    GO:0005737 ... P13254 34953671
    628064 7f1u:D (2.4) BS02 3LM 4.4.1.11
    4.4.1.2
    GO:0005737 ... P13254 34953671
    628065 7f1v:A (2.25) BS01 7XF 4.4.1.11
    4.4.1.2
    GO:0005737 ... P13254 34953671
    628066 7f1v:B (2.25) BS01 7XF 4.4.1.11
    4.4.1.2
    GO:0005737 ... P13254 34953671
    628067 7f1v:C (2.25) BS01 7XF 4.4.1.11
    4.4.1.2
    GO:0005737 ... P13254 34953671
    628068 7f1v:D (2.25) BS01 7XF 4.4.1.11
    4.4.1.2
    GO:0005737 ... P13254 34953671
    628069 7f1w:A (3.097) BS01 IHP ? GO:0001664 ... P08168 34678158
    628070 7f1w:B (3.097) BS01 IHP ? GO:0001664 ... P08168 34678158
    628071 7f1w:D (3.097) BS01 IHP ? GO:0001664 ... P08168 34678158
    628072 7f1x:A (3.0) BS01 I3P ? GO:0001664 ... P08168 34678158
    628073 7f1x:A (3.0) BS02 PTD ? GO:0001664 ... P08168 34678158
    628074 7f1x:B (3.0) BS01 I3P ? GO:0001664 ... P08168 34678158
    628075 7f1x:C (3.0) BS01 I3P ? GO:0001664 ... P08168 34678158
    628076 7f1x:D (3.0) BS01 I3P ? GO:0001664 ... P08168 34678158
    628077 7f1x:D (3.0) BS02 PTD ? GO:0001664 ... P08168 34678158
    628078 7f1y:A (1.33) BS01 FMN 1.1.3.- GO:0000166 ... Q44467 34214876
    628079 7f1y:B (1.33) BS01 FMN 1.1.3.- GO:0000166 ... Q44467 34214876
    628080 7f1z:A (3.46) BS01 GDP ? GO:0003924 ... P63092 35687690
    628081 7f1z:F (3.46) BS01 LDP ? GO:0001588 ... P21728 35687690
    628082 7f20:A (1.3) BS01 FMN 1.1.3.- GO:0016491 ... Q44467 34214876
    628083 7f20:B (1.3) BS01 FMN 1.1.3.- GO:0016491 ... Q44467 34214876
    628084 7f21:A (1.38) BS01 FMN 1.1.3.- GO:0016491 ... Q44467 34214876
    628085 7f21:B (1.38) BS01 FMN 1.1.3.- GO:0016491 ... Q44467 34214876
    628086 7f22:A (1.41) BS01 FMN 1.1.3.- GO:0000166 ... Q44467 34214876
    628087 7f22:A (1.41) BS02 PYR 1.1.3.- GO:0000166 ... Q44467 34214876
    628088 7f22:B (1.41) BS01 FMN 1.1.3.- GO:0000166 ... Q44467 34214876
    628089 7f22:B (1.41) BS02 PYR 1.1.3.- GO:0000166 ... Q44467 34214876
    628090 7f23:A (3.58) BS01 GTP ? GO:0003924 ... P63092 35687690
    628091 7f23:F (3.58) BS01 LDP ? GO:0001588 ... P21728 35687690
    628092 7f24:A (4.16) BS01 GTP ? GO:0003924 ... P63092 35687690
    628093 7f24:F (4.16) BS01 LDP ? GO:0001588 ... P21728 35687690
    628094 7f2a:A (2.58) BS01 TYD ? GO:0003746 ... X5EQ00 N/A
    628095 7f2a:F (2.58) BS01 TYD ? GO:0003746 ... X5EQ00 N/A
    628096 7f2d:A (2.45) BS01 peptide ? N/A P93026 34983843
    628097 7f2f:A (2.55) BS01 dna ? GO:0046983 ... P33122 N/A
    628098 7f2f:A (2.55) BS02 dna ? GO:0046983 ... P33122 N/A
    628099 7f2f:B (2.55) BS01 dna ? GO:0046983 ... P33122 N/A
    628100 7f2f:B (2.55) BS02 dna ? GO:0046983 ... P33122 N/A
    628101 7f2i:A (2.35) BS01 peptide ? N/A P93026 34983843
    628102 7f2j:A (1.6) BS01 RAP 5.2.1.8 GO:0003755 ... Q93ZG9 35218805
    628103 7f2j:B (1.6) BS01 RAP 5.2.1.8 GO:0003755 ... Q93ZG9 35218805
    628104 7f2k:A (2.10002) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 34520193
    628105 7f2k:A (2.10002) BS02 0X8 3.1.4.53 GO:0004114 ... Q08499 34520193
    628106 7f2k:B (2.10002) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 34520193
    628107 7f2k:B (2.10002) BS02 0X8 3.1.4.53 GO:0004114 ... Q08499 34520193
    628108 7f2l:A (2.10111) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 34520193
    628109 7f2l:A (2.10111) BS02 1AS 3.1.4.53 GO:0004114 ... Q08499 34520193
    628110 7f2l:B (2.10111) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 34520193
    628111 7f2l:B (2.10111) BS02 1AS 3.1.4.53 GO:0004114 ... Q08499 34520193
    628112 7f2m:A (2.20004) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 34520193
    628113 7f2m:A (2.20004) BS02 1GF 3.1.4.53 GO:0004114 ... Q08499 34520193
    628114 7f2m:B (2.20004) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 34520193
    628115 7f2m:B (2.20004) BS02 1GF 3.1.4.53 GO:0004114 ... Q08499 34520193
    628116 7f2o:R (2.9) BS01 peptide ? GO:0004930 ... P30411 34518695
    628117 7f2r:A (1.95) BS01 9EF 2.3.1.39 GO:0004314 ... Q76KY5 34473106
    628118 7f2r:B (1.95) BS01 9EF ? N/A Q76KY4 34473106
    628119 7f2r:C (1.95) BS01 9EF 2.3.1.39 GO:0004314 ... Q76KY5 34473106
    628120 7f2u:A (1.984) BS01 ADP 2.7.1.180 GO:0005524 ... A0A0H3GJF7 35281791
    628121 7f2u:A (1.984) BS02 MG 2.7.1.180 GO:0005524 ... A0A0H3GJF7 35281791
    628122 7f2u:B (1.984) BS01 ADP 2.7.1.180 GO:0005524 ... A0A0H3GJF7 35281791
    628123 7f2u:B (1.984) BS02 MG 2.7.1.180 GO:0005524 ... A0A0H3GJF7 35281791
    628124 7f2w:A (2.16) BS01 URC 1.7.3.3 GO:0004846 ... D6Y599 34403675
    628125 7f2w:A (2.16) BS02 URC 1.7.3.3 GO:0004846 ... D6Y599 34403675
    628126 7f2w:B (2.16) BS01 URC 1.7.3.3 GO:0004846 ... D6Y599 34403675
    628127 7f2w:B (2.16) BS02 URC 1.7.3.3 GO:0004846 ... D6Y599 34403675
    628128 7f2x:A (2.007) BS01 ANP 2.7.12.2 GO:0004672 ... Q02750 35831322
    628129 7f2y:A (1.55) BS01 HEM 4.8.1.4 GO:0016829 ... P82604 35272237
    628130 7f2z:A (2.3) BS01 HEM 4.8.1.4 GO:0016829 ... P82604 35272237
    628131 7f2z:B (2.3) BS01 HEM 4.8.1.4 GO:0016829 ... P82604 35272237
    628132 7f30:A (2.0) BS01 HEM 4.8.1.4 GO:0016829 ... P82604 35272237
    628133 7f30:A (2.0) BS02 0WQ 4.8.1.4 GO:0016829 ... P82604 35272237
    628134 7f35:A (2.6) BS01 GFN N/A N/A N/A N/A
    628135 7f35:B (2.6) BS01 GFN N/A N/A N/A N/A
    628136 7f35:C (2.6) BS01 GFN N/A N/A N/A N/A
    628137 7f35:D (2.6) BS01 GFN N/A N/A N/A N/A
    628138 7f35:E (2.6) BS01 GFN N/A N/A N/A N/A
    628139 7f35:F (2.6) BS01 GFN N/A N/A N/A N/A
    628140 7f36:A (3.098) BS01 rna ? GO:0000049 ... Q8ZL98 N/A
    628141 7f36:A (3.098) BS02 rna ? GO:0000049 ... Q8ZL98 N/A
    628142 7f36:A (3.098) BS03 rna ? GO:0000049 ... Q8ZL98 N/A
    628143 7f36:A (3.098) BS04 CA ? GO:0000049 ... Q8ZL98 N/A
    628144 7f36:B (3.098) BS01 rna ? GO:0000049 ... Q8ZL98 N/A
    628145 7f36:B (3.098) BS02 rna ? GO:0000049 ... Q8ZL98 N/A
    628146 7f36:B (3.098) BS03 CA ? GO:0000049 ... Q8ZL98 N/A
    628147 7f36:C (3.098) BS01 rna ? GO:0000049 ... Q8ZL98 N/A
    628148 7f36:C (3.098) BS02 rna ? GO:0000049 ... Q8ZL98 N/A
    628149 7f36:D (3.098) BS01 rna ? GO:0000049 ... Q8ZL98 N/A
    628150 7f36:D (3.098) BS02 rna ? GO:0000049 ... Q8ZL98 N/A
    628151 7f36:D (3.098) BS03 rna ? GO:0000049 ... Q8ZL98 N/A
    628152 7f36:D (3.098) BS04 CA ? GO:0000049 ... Q8ZL98 N/A
    628153 7f3b:A (2.81) BS01 D4C 1.5.1.3 GO:0004146 ... P0ABQ4 34802838
    628154 7f3g:A (2.1) BS01 RXT 2.7.11.1 GO:0004672 ... O15075 34445192 BindingDB: Kd=68nM
    628155 7f3g:B (2.1) BS01 RXT 2.7.11.1 GO:0004672 ... O15075 34445192 BindingDB: Kd=68nM
    628156 7f3h:A (2.5) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... A0A2I9DQ46 N/A
    628157 7f3h:B (2.5) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... A0A2I9DQ46 N/A
    628158 7f3h:C (2.5) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... A0A2I9DQ46 N/A
    628159 7f3h:D (2.5) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... A0A2I9DQ46 N/A
    628160 7f3i:A (2.25) BS01 rna ? GO:0003676 ... Q9Y2T7 N/A
    628161 7f3i:C (2.25) BS01 rna ? GO:0003676 ... Q9Y2T7 N/A
    628162 7f3i:E (2.25) BS01 rna ? GO:0003676 ... Q9Y2T7 N/A
    628163 7f3j:A (1.95) BS01 rna ? GO:0003676 ... Q9Y2T7 N/A
    628164 7f3j:C (1.95) BS01 rna ? GO:0003676 ... Q9Y2T7 N/A
    628165 7f3j:C (1.95) BS02 rna ? GO:0003676 ... Q9Y2T7 N/A
    628166 7f3j:E (1.95) BS01 rna ? GO:0003676 ... Q9Y2T7 N/A
    628167 7f3j:G (1.95) BS01 rna ? GO:0003676 ... Q9Y2T7 N/A
    628168 7f3k:A (1.76) BS01 rna ? GO:0003676 ... Q9Y2T7 N/A
    628169 7f3l:A (1.88) BS01 rna ? GO:0003676 ... Q9Y2T7 N/A
    628170 7f3m:A (2.289) BS01 GX3 2.7.10.1 GO:0004672 ... P22455 N/A BindingDB: Ki=73nM, IC50=19nM
    628171 7f3o:A (1.44) BS01 GLU ? GO:0015276 ... P42262 34267258
    628172 7f3o:A (1.44) BS02 0YK ? GO:0015276 ... P42262 34267258
    628173 7f3o:A (1.44) BS03 ZN ? GO:0015276 ... P42262 34267258
    628174 7f3o:B (1.44) BS01 0YK ? GO:0015276 ... P42262 34267258
    628175 7f3o:B (1.44) BS02 GLU ? GO:0015276 ... P42262 34267258
    628176 7f3o:B (1.44) BS03 ZN ? GO:0015276 ... P42262 34267258
    628177 7f3o:C (1.44) BS01 GLU ? GO:0015276 ... P42262 34267258
    628178 7f3o:C (1.44) BS02 ZN ? GO:0015276 ... P42262 34267258
    628179 7f3o:C (1.44) BS03 0YK ? GO:0015276 ... P42262 34267258
    628180 7f3o:D (1.44) BS01 0YK ? GO:0015276 ... P42262 34267258
    628181 7f3o:D (1.44) BS02 GLU ? GO:0015276 ... P42262 34267258
    628182 7f3o:D (1.44) BS03 ZN ? GO:0015276 ... P42262 34267258
    628183 7f3o:D (1.44) BS04 ZN ? GO:0015276 ... P42262 34267258
    628184 7f3o:E (1.44) BS01 ZN ? GO:0015276 ... P42262 34267258
    628185 7f3o:E (1.44) BS02 GLU ? GO:0015276 ... P42262 34267258
    628186 7f3o:E (1.44) BS03 0YK ? GO:0015276 ... P42262 34267258
    628187 7f3o:F (1.44) BS01 0YK ? GO:0015276 ... P42262 34267258
    628188 7f3o:F (1.44) BS02 GLU ? GO:0015276 ... P42262 34267258
    628189 7f3o:F (1.44) BS03 ZN ? GO:0015276 ... P42262 34267258
    628190 7f3p:A (2.6) BS01 ZN 1.1.1.80 GO:0008270 ... P14941 34658118
    628191 7f3p:B (2.6) BS01 ZN 1.1.1.80 GO:0008270 ... P14941 34658118
    628192 7f3p:C (2.6) BS01 NAP 1.1.1.80 GO:0008270 ... P14941 34658118
    628193 7f3p:C (2.6) BS02 ZN 1.1.1.80 GO:0008270 ... P14941 34658118
    628194 7f3p:D (2.6) BS01 ZN 1.1.1.80 GO:0008270 ... P14941 34658118
    628195 7f3s:A (1.4) BS01 peptide 3.6.4.12 GO:0006338 ... P32597 35296687
    628196 7f3t:A (3.69) BS01 COA ? GO:0005216 ... Q9BXJ8 34409941
    628197 7f3t:B (3.69) BS01 COA ? GO:0005216 ... Q9BXJ8 34409941
    628198 7f3v:A (1.47) BS01 EPZ 1.10.3.-
    2.4.2.1
    2.4.2.28
    3.5.4.4
    GO:0000270 ... P33644 35164571
    628199 7f3v:B (1.47) BS01 EPZ 1.10.3.-
    2.4.2.1
    2.4.2.28
    3.5.4.4
    GO:0000270 ... P33644 35164571
    628200 7f3v:C (1.47) BS01 EPZ 1.10.3.-
    2.4.2.1
    2.4.2.28
    3.5.4.4
    GO:0000270 ... P33644 35164571

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).