SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    628601 7f4v:cB (2.04) BS38 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    628602 7f4v:cB (2.04) BS39 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    628603 7f4v:cB (2.04) BS40 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    628604 7f4v:cB (2.04) BS41 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    628605 7f4v:cB (2.04) BS42 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    628606 7f4v:cB (2.04) BS43 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    628607 7f4v:cB (2.04) BS44 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    628608 7f4v:cB (2.04) BS45 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    628609 7f4v:cB (2.04) BS46 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    628610 7f4v:cB (2.04) BS47 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    628611 7f4v:cB (2.04) BS48 1L3 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    628612 7f4v:cB (2.04) BS49 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    628613 7f4v:cB (2.04) BS50 CLA 1.97.1.12 GO:0005886 ... Q7NFT5 N/A
    628614 7f4v:cC (2.04) BS01 SF4 1.97.1.12 GO:0005886 ... Q7NG86 N/A
    628615 7f4v:cC (2.04) BS02 SF4 1.97.1.12 GO:0005886 ... Q7NG86 N/A
    628616 7f4v:cF (2.04) BS01 CLA ? GO:0009522 ... Q7NH05 N/A
    628617 7f4v:cF (2.04) BS02 CLA ? GO:0009522 ... Q7NH05 N/A
    628618 7f4v:cF (2.04) BS03 CLA ? GO:0009522 ... Q7NH05 N/A
    628619 7f4v:cF (2.04) BS04 CLA ? GO:0009522 ... Q7NH05 N/A
    628620 7f4v:cF (2.04) BS05 CLA ? GO:0009522 ... Q7NH05 N/A
    628621 7f4v:cF (2.04) BS06 CLA ? GO:0009522 ... Q7NH05 N/A
    628622 7f4v:cI (2.04) BS01 CLA ? GO:0005886 ... P0C029 N/A
    628623 7f4v:cJ (2.04) BS01 CLA N/A N/A N/A N/A
    628624 7f4v:cJ (2.04) BS02 CLA N/A N/A N/A N/A
    628625 7f4v:cJ (2.04) BS03 CLA N/A N/A N/A N/A
    628626 7f4v:cL (2.04) BS01 CLA ? GO:0005886 ... Q7NIE7 N/A
    628627 7f4v:cL (2.04) BS02 CLA ? GO:0005886 ... Q7NIE7 N/A
    628628 7f4v:cL (2.04) BS03 CLA ? GO:0005886 ... Q7NIE7 N/A
    628629 7f4v:cL (2.04) BS04 CLA ? GO:0005886 ... Q7NIE7 N/A
    628630 7f4v:cL (2.04) BS05 CLA ? GO:0005886 ... Q7NIE7 N/A
    628631 7f4v:cL (2.04) BS06 CLA ? GO:0005886 ... Q7NIE7 N/A
    628632 7f4v:cL (2.04) BS07 CLA ? GO:0005886 ... Q7NIE7 N/A
    628633 7f4v:cL (2.04) BS08 CLA ? GO:0005886 ... Q7NIE7 N/A
    628634 7f4v:cL (2.04) BS09 CLA ? GO:0005886 ... Q7NIE7 N/A
    628635 7f4w:A (2.9) BS01 peptide ? N/A D9UAY1 34506741
    628636 7f4w:C (2.9) BS01 peptide ? N/A D9UAY1 34506741
    628637 7f4x:A (1.6) BS01 ADP ? N/A P0DMV9 N/A
    628638 7f4y:A (2.2) BS01 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 34869578
    628639 7f4y:A (2.2) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 34869578
    628640 7f4y:A (2.2) BS03 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 34869578
    628641 7f4y:A (2.2) BS04 DUP 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 34869578
    628642 7f4y:A (2.2) BS05 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 34869578
    628643 7f4y:A (2.2) BS06 5GP 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 34869578
    628644 7f4y:B (2.2) BS01 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 34869578
    628645 7f4y:B (2.2) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 34869578
    628646 7f4y:B (2.2) BS03 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 34869578
    628647 7f4y:B (2.2) BS04 5GP 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 34869578
    628648 7f4z:A (1.8) BS01 ADP ? GO:0005524 ... P0DMV9 N/A
    628649 7f50:A (1.703) BS01 MG ? GO:0005524 ... P0DMV9 N/A
    628650 7f50:A (1.703) BS02 ANP ? GO:0005524 ... P0DMV9 N/A
    628651 7f51:A (1.98) BS01 ZN 2.3.1.286 GO:0017136 ... P53686 35296687
    628652 7f51:A (1.98) BS02 BA7 2.3.1.286 GO:0017136 ... P53686 35296687
    628653 7f53:R (3.0) BS01 peptide ? GO:0002024 ... P32245 34433901
    628654 7f53:R (3.0) BS02 CA ? GO:0002024 ... P32245 34433901
    628655 7f54:R (3.0) BS01 peptide ? GO:0002024 ... P32245 34433901
    628656 7f54:R (3.0) BS02 CA ? GO:0002024 ... P32245 34433901
    628657 7f55:R (3.1) BS01 peptide ? GO:0002024 ... P32245 34433901
    628658 7f55:R (3.1) BS02 CA ? GO:0002024 ... P32245 34433901
    628659 7f58:R (3.1) BS01 1I8 ? GO:0002024 ... P32245 34433901 BindingDB: IC50=1.2nM, EC50=3.6nM, Ki=3nM
    628660 7f58:R (3.1) BS02 CA ? GO:0002024 ... P32245 34433901
    628661 7f5c:A (1.65004) BS01 EUU ? GO:0006357 ... J3QQQ8 N/A
    628662 7f5d:A (1.57151) BS01 EUO ? GO:0006357 ... Q12830 N/A
    628663 7f5e:A (2.20017) BS01 1IY ? GO:0006357 ... Q12830 N/A
    628664 7f5g:C (1.75) BS01 FUC ? N/A P0DTC2 35460753
    628665 7f5i:A (1.65) BS01 GLU 3.5.1.28 GO:0008270 ... Q8XLA4 34482025
    628666 7f5i:A (1.65) BS02 GLU 3.5.1.28 GO:0008270 ... Q8XLA4 34482025
    628667 7f5i:A (1.65) BS03 ZN 3.5.1.28 GO:0008270 ... Q8XLA4 34482025
    628668 7f5m:A (2.4) BS01 peptide ? GO:0006355 ... Q99314 35296687
    628669 7f5m:B (2.4) BS01 peptide ? GO:0006355 ... Q99314 35296687
    628670 7f5s:LA (2.72) BS01 rna ? GO:0002181 ... P62917 35674491
    628671 7f5s:LA (2.72) BS02 MG ? GO:0002181 ... P62917 35674491
    628672 7f5s:LB (2.72) BS01 rna ? GO:0002181 ... P39023 35674491
    628673 7f5s:LB (2.72) BS02 MG ? GO:0002181 ... P39023 35674491
    628674 7f5s:LC (2.72) BS01 rna ? GO:0002181 ... P36578 35674491
    628675 7f5s:LC (2.72) BS02 rna ? GO:0002181 ... P36578 35674491
    628676 7f5s:LD (2.72) BS01 rna ? GO:0000027 ... P46777 35674491
    628677 7f5s:LD (2.72) BS02 rna ? GO:0000027 ... P46777 35674491
    628678 7f5s:LE (2.72) BS01 rna ? GO:0002181 ... Q02878 35674491
    628679 7f5s:LF (2.72) BS01 rna ? GO:0000463 ... P18124 35674491
    628680 7f5s:LF (2.72) BS02 rna ? GO:0000463 ... P18124 35674491
    628681 7f5s:LG (2.72) BS01 rna ? GO:0000470 ... P62424 35674491
    628682 7f5s:LG (2.72) BS02 rna ? GO:0000470 ... P62424 35674491
    628683 7f5s:LH (2.72) BS01 rna ? GO:0002181 ... P32969 35674491
    628684 7f5s:LI (2.72) BS01 rna ? GO:0000122 ... P27635 35674491
    628685 7f5s:LI (2.72) BS02 rna ? GO:0000122 ... P27635 35674491
    628686 7f5s:LJ (2.72) BS01 rna ? GO:0000027 ... P62913 35674491
    628687 7f5s:LJ (2.72) BS02 rna ? GO:0000027 ... P62913 35674491
    628688 7f5s:LL (2.72) BS01 rna ? GO:0001824 ... P26373 35674491
    628689 7f5s:LL (2.72) BS02 rna ? GO:0001824 ... P26373 35674491
    628690 7f5s:LM (2.72) BS01 rna ? GO:0002181 ... P50914 35674491
    628691 7f5s:LN (2.72) BS01 rna ? GO:0002181 ... P61313 35674491
    628692 7f5s:LN (2.72) BS02 rna ? GO:0002181 ... P61313 35674491
    628693 7f5s:LO (2.72) BS01 rna ? GO:0002181 ... P40429 35674491
    628694 7f5s:LP (2.72) BS01 rna ? GO:0002181 ... P18621 35674491
    628695 7f5s:LP (2.72) BS02 rna ? GO:0002181 ... P18621 35674491
    628696 7f5s:LQ (2.72) BS01 rna ? GO:0002181 ... Q07020 35674491
    628697 7f5s:LR (2.72) BS01 rna ? GO:0002181 ... P84098 35674491
    628698 7f5s:LS (2.72) BS01 rna ? GO:0002181 ... Q02543 35674491
    628699 7f5s:LS (2.72) BS02 rna ? GO:0002181 ... Q02543 35674491
    628700 7f5s:LT (2.72) BS01 rna ? GO:0002181 ... P46778 35674491
    628701 7f5s:LT (2.72) BS02 rna ? GO:0002181 ... P46778 35674491
    628702 7f5s:LU (2.72) BS01 rna ? GO:0002181 ... P35268 35674491
    628703 7f5s:LV (2.72) BS01 rna ? GO:0000122 ... P62829 35674491
    628704 7f5s:LW (2.72) BS01 rna ? GO:0000027 ... P83731 35674491
    628705 7f5s:LX (2.72) BS01 rna ? GO:0002181 ... P62750 35674491
    628706 7f5s:LX (2.72) BS02 rna ? GO:0002181 ... P62750 35674491
    628707 7f5s:LY (2.72) BS01 rna ? GO:0002181 ... P61254 35674491
    628708 7f5s:LY (2.72) BS02 rna ? GO:0002181 ... P61254 35674491
    628709 7f5s:LZ (2.72) BS01 rna ? GO:0002181 ... P61353 35674491
    628710 7f5s:La (2.72) BS01 rna ? GO:0002181 ... P46776 35674491
    628711 7f5s:Lb (2.72) BS01 rna ? GO:0002181 ... P47914 35674491
    628712 7f5s:Lc (2.72) BS01 rna ? GO:0002181 ... P62888 35674491
    628713 7f5s:Ld (2.72) BS01 rna ? GO:0002181 ... P62899 35674491
    628714 7f5s:Le (2.72) BS01 rna ? GO:0002181 ... P62910 35674491
    628715 7f5s:Le (2.72) BS02 MG ? GO:0002181 ... P62910 35674491
    628716 7f5s:Lf (2.72) BS01 rna ? GO:0000049 ... P18077 35674491
    628717 7f5s:Lf (2.72) BS02 MG ? GO:0000049 ... P18077 35674491
    628718 7f5s:Lg (2.72) BS01 rna ? GO:0002181 ... P49207 35674491
    628719 7f5s:Lg (2.72) BS02 MG ? GO:0002181 ... P49207 35674491
    628720 7f5s:Lg (2.72) BS03 ZN ? GO:0002181 ... P49207 35674491
    628721 7f5s:Lh (2.72) BS01 rna ? GO:0000463 ... P42766 35674491
    628722 7f5s:Lh (2.72) BS02 rna ? GO:0000463 ... P42766 35674491
    628723 7f5s:Li (2.72) BS01 rna ? GO:0002181 ... Q9Y3U8 35674491
    628724 7f5s:Lj (2.72) BS01 rna ? GO:0002181 ... P61927 35674491
    628725 7f5s:Lj (2.72) BS02 rna ? GO:0002181 ... P61927 35674491
    628726 7f5s:Lj (2.72) BS03 ZN ? GO:0002181 ... P61927 35674491
    628727 7f5s:Lk (2.72) BS01 rna ? GO:0001501 ... P63173 35674491
    628728 7f5s:Ll (2.72) BS01 rna ? GO:0002181 ... P62891 35674491
    628729 7f5s:Ll (2.72) BS02 rna ? GO:0002181 ... P62891 35674491
    628730 7f5s:Lm (2.72) BS01 rna ? GO:0002181 ... P62987 35674491
    628731 7f5s:Lm (2.72) BS02 ZN ? GO:0002181 ... P62987 35674491
    628732 7f5s:Lo (2.72) BS01 rna ? GO:0002181 ... P83881 35674491
    628733 7f5s:Lp (2.72) BS01 rna ? GO:0002181 ... P61513 35674491
    628734 7f5s:Lp (2.72) BS02 ZN ? GO:0002181 ... P61513 35674491
    628735 7f5s:Lr (2.72) BS01 rna ? GO:0002181 ... P46779 35674491
    628736 7f5x:A (3.5) BS01 GGL 1.2.1.41
    2.7.2.11
    GO:0003824 ... Q9VNW6 35286254
    628737 7f5x:B (3.5) BS01 GGL 1.2.1.41
    2.7.2.11
    GO:0003824 ... Q9VNW6 35286254
    628738 7f5x:C (3.5) BS01 GGL 1.2.1.41
    2.7.2.11
    GO:0003824 ... Q9VNW6 35286254
    628739 7f5x:D (3.5) BS01 GGL 1.2.1.41
    2.7.2.11
    GO:0003824 ... Q9VNW6 35286254
    628740 7f60:A (2.85) BS01 peptide ? GO:0000922 ... P78406 N/A
    628741 7f60:B (2.85) BS01 peptide ? GO:0000922 ... P78406 N/A
    628742 7f61:A (2.6) BS01 1IB ? GO:0004930 ... Q9Y5N1 36243875
    628743 7f61:A (2.6) BS02 CLR ? GO:0004930 ... Q9Y5N1 36243875
    628744 7f65:A (2.202) BS01 BEZ 3.1.1.84 GO:0005737 ... Q9L9D7 34351032
    628745 7f68:A (1.24) BS01 GTP 3.6.5.2 GO:0003924 ... P01111 N/A
    628746 7f68:A (1.24) BS02 MG 3.6.5.2 GO:0003924 ... P01111 N/A
    628747 7f69:A (1.5) BS01 peptide ? N/A Q9Y4P8 36857448
    628748 7f6e:A (1.77) BS01 MG ? GO:0030288 ... Q53VZ2 34866608
    628749 7f6e:B (1.77) BS01 MG ? GO:0030288 ... Q53VZ2 34866608
    628750 7f6e:C (1.77) BS01 MG ? GO:0030288 ... Q53VZ2 34866608
    628751 7f6f:A (2.1) BS01 MG ? GO:0030288 ... Q53VZ2 34866608
    628752 7f6f:B (2.1) BS01 MG ? GO:0030288 ... Q53VZ2 34866608
    628753 7f6g:A (2.9) BS01 peptide N/A GO:0004930 ... N/A 37038975
    628754 7f6g:A (2.9) BS02 CLR N/A GO:0004930 ... N/A 37038975
    628755 7f6g:A (2.9) BS03 CLR N/A GO:0004930 ... N/A 37038975
    628756 7f6g:A (2.9) BS04 CLR N/A GO:0004930 ... N/A 37038975
    628757 7f6g:A (2.9) BS05 CLR N/A GO:0004930 ... N/A 37038975
    628758 7f6g:A (2.9) BS06 CLR N/A GO:0004930 ... N/A 37038975
    628759 7f6g:A (2.9) BS07 CLR N/A GO:0004930 ... N/A 37038975
    628760 7f6h:A (2.9) BS01 peptide ? GO:0002020 ... P30411 35132089
    628761 7f6h:A (2.9) BS02 CLR ? GO:0002020 ... P30411 35132089
    628762 7f6i:A (2.8) BS01 peptide ? GO:0002020 ... P30411 35132089
    628763 7f6i:A (2.8) BS02 CLR ? GO:0002020 ... P30411 35132089
    628764 7f6i:A (2.8) BS03 CLR ? GO:0002020 ... P30411 35132089
    628765 7f6i:A (2.8) BS04 CLR ? GO:0002020 ... P30411 35132089
    628766 7f6j:A (2.1) BS01 MG 3.6.5.2 GO:0000045 ... P51149 34552186
    628767 7f6j:A (2.1) BS02 GTP 3.6.5.2 GO:0000045 ... P51149 34552186
    628768 7f6j:B (2.1) BS01 MG 3.6.5.2 GO:0000045 ... P51149 34552186
    628769 7f6j:B (2.1) BS02 GTP 3.6.5.2 GO:0000045 ... P51149 34552186
    628770 7f6m:A (2.4) BS01 peptide ? GO:0008013 ... P25054 N/A
    628771 7f6n:A (2.3) BS01 MG ? GO:0030288 ... Q53VZ2 34866608
    628772 7f6n:B (2.3) BS01 MG ? GO:0030288 ... Q53VZ2 34866608
    628773 7f6n:C (2.3) BS01 MG ? GO:0030288 ... Q53VZ2 34866608
    628774 7f6o:A (2.5) BS01 MN ? GO:0030288 ... Q53VZ2 34866608
    628775 7f6o:A (2.5) BS02 SO3 ? GO:0030288 ... Q53VZ2 34866608
    628776 7f6o:B (2.5) BS01 MN ? GO:0030288 ... Q53VZ2 34866608
    628777 7f6o:B (2.5) BS02 SO3 ? GO:0030288 ... Q53VZ2 34866608
    628778 7f6q:A (1.63) BS01 PDO ? GO:0030288 ... Q53VZ2 34866608
    628779 7f6q:A (1.63) BS02 PDO ? GO:0030288 ... Q53VZ2 34866608
    628780 7f6r:A (2.09) BS01 SO3 ? GO:0030288 ... Q53VZ2 34866608
    628781 7f6r:A (2.09) BS02 SO3 ? GO:0030288 ... Q53VZ2 34866608
    628782 7f6r:A (2.09) BS03 CO3 ? GO:0030288 ... Q53VZ2 34866608
    628783 7f6s:A (1.8) BS01 GOA ? GO:0030288 ... Q53VZ2 34866608
    628784 7f6u:A (1.75) BS01 BGQ ? GO:0030288 ... Q53VZ2 34866608
    628785 7f6u:A (1.75) BS02 1MI ? GO:0030288 ... Q53VZ2 34866608
    628786 7f6v:A (3.66) BS01 CLR ? GO:0005216 ... Q9BXJ8 35235791
    628787 7f6v:B (3.66) BS01 CLR ? GO:0005216 ... Q9BXJ8 35235791
    628788 7f6w:A (2.607) BS01 KAA 6.1.1.6 GO:0000166 ... P15180 35133502
    628789 7f6x:A (2.16) BS01 I3A ? GO:0046872 ... L7PIL3 N/A
    628790 7f6x:A (2.16) BS02 FE ? GO:0046872 ... L7PIL3 N/A
    628791 7f6x:B (2.16) BS01 GOA ? GO:0046872 ... L7PIL3 N/A
    628792 7f6x:B (2.16) BS02 FE ? GO:0046872 ... L7PIL3 N/A
    628793 7f71:A (1.58) BS01 GLU 2.3.2.- GO:0005886 ... I6Y9J2 35475970
    628794 7f71:A (1.58) BS02 BGC 2.3.2.- GO:0005886 ... I6Y9J2 35475970
    628795 7f71:A (1.58) BS03 GLU 2.3.2.- GO:0005886 ... I6Y9J2 35475970
    628796 7f71:B (1.58) BS01 GLU 2.3.2.- GO:0005886 ... I6Y9J2 35475970
    628797 7f72:A (1.64) BS01 1JA ? GO:0000166 ... O05773 36750726
    628798 7f72:A (1.64) BS02 FMN ? GO:0000166 ... O05773 36750726
    628799 7f74:A (2.0) BS01 FMN ? GO:0000166 ... O05773 36750726
    628800 7f74:B (2.0) BS01 FMN ? GO:0000166 ... O05773 36750726

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).