SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    64601 1xzn:B (2.27) BS01 MG 2.4.2.9 GO:0003723 ... P41007 15716449
    64602 1xzo:A (1.702) BS01 CA ? GO:0005886 ... P54178 15723536
    64603 1xzo:A (1.702) BS02 CA ? GO:0005886 ... P54178 15723536
    64604 1xzo:A (1.702) BS03 CA ? GO:0005886 ... P54178 15723536
    64605 1xzo:B (1.702) BS01 CA ? GO:0005886 ... P54178 15723536
    64606 1xzo:B (1.702) BS02 CA ? GO:0005886 ... P54178 15723536
    64607 1xzo:B (1.702) BS03 CA ? GO:0005886 ... P54178 15723536
    64608 1xzq:A (2.9) BS01 FON 3.6.5.- GO:0002098 ... Q9WYA4 15616586
    64609 1xzq:A (2.9) BS02 FON 3.6.5.- GO:0002098 ... Q9WYA4 15616586
    64610 1xzq:B (2.9) BS01 FON 3.6.5.- N/A Q9WYA4 15616586
    64611 1xzq:B (2.9) BS02 FON 3.6.5.- N/A Q9WYA4 15616586
    64612 1xzu:A (2.16) BS01 HEM ? GO:0004601 ... P69905 15835899
    64613 1xzu:B (2.16) BS01 HEM ? GO:0004601 ... P68871 15835899
    64614 1xzu:C (2.16) BS01 HEM ? GO:0004601 ... P69905 15835899
    64615 1xzu:D (2.16) BS01 HEM ? GO:0004601 ... P68871 15835899
    64616 1xzv:A (2.11) BS01 HEM ? GO:0004601 ... P69905 15835899
    64617 1xzv:B (2.11) BS01 HEM ? GO:0004601 ... P68871 15835899
    64618 1xzv:C (2.11) BS01 HEM ? GO:0004601 ... P69905 15835899
    64619 1xzv:D (2.11) BS01 HEM ? GO:0004601 ... P68871 15835899
    64620 1xzw:A (2.5) BS01 FE 3.1.3.2 GO:0003993 ... Q9SE00 15625111
    64621 1xzw:A (2.5) BS02 MN 3.1.3.2 GO:0003993 ... Q9SE00 15625111
    64622 1xzw:A (2.5) BS03 PO4 3.1.3.2 GO:0003993 ... Q9SE00 15625111
    64623 1xzw:A (2.5) BS04 PO4 3.1.3.2 GO:0003993 ... Q9SE00 15625111
    64624 1xzw:B (2.5) BS01 FE 3.1.3.2 GO:0003993 ... Q9SE00 15625111
    64625 1xzw:B (2.5) BS02 MN 3.1.3.2 GO:0003993 ... Q9SE00 15625111
    64626 1xzw:B (2.5) BS03 PO4 3.1.3.2 GO:0003993 ... Q9SE00 15625111
    64627 1xzw:B (2.5) BS04 PO4 3.1.3.2 GO:0003993 ... Q9SE00 15625111
    64628 1xzx:X (2.5) BS01 T3 ? GO:0003677 ... P10828 15466465 MOAD: Kd=0.06nM
    64629 1y01:B (2.8) BS01 HEM ? GO:0004601 ... P69905 15550245
    64630 1y01:B (2.8) BS02 CHK ? GO:0004601 ... P69905 15550245
    64631 1y02:A (1.8) BS01 ZN 2.3.2.27 N/A Q8WZ73 15576038
    64632 1y02:A (1.8) BS02 ZN 2.3.2.27 N/A Q8WZ73 15576038
    64633 1y07:A (1.55) BS01 FE 1.15.1.2 GO:0005506 ... O83795 16791639
    64634 1y07:B (1.55) BS01 FE 1.15.1.2 GO:0005506 ... O83795 16791639
    64635 1y07:C (1.55) BS01 FE 1.15.1.2 GO:0005506 ... O83795 16791639
    64636 1y07:D (1.55) BS01 FE 1.15.1.2 GO:0005506 ... O83795 16791639
    64637 1y09:A (2.25) BS01 HEM ? GO:0004601 ... P69905 15835899
    64638 1y09:B (2.25) BS01 HEM ? GO:0004601 ... P68871 15835899
    64639 1y09:C (2.25) BS01 HEM ? GO:0004601 ... P69905 15835899
    64640 1y09:D (2.25) BS01 HEM ? GO:0004601 ... P68871 15835899
    64641 1y0a:A (2.22) BS01 HEM ? GO:0004601 ... P69905 15835899
    64642 1y0a:B (2.22) BS01 HEM ? GO:0004601 ... P68871 15835899
    64643 1y0a:C (2.22) BS01 HEM ? GO:0004601 ... P69905 15835899
    64644 1y0a:D (2.22) BS01 HEM ? GO:0004601 ... P68871 15835899
    64645 1y0b:A (1.8) BS01 G4P 2.4.2.22 GO:0000310 ... P42085 N/A
    64646 1y0b:A (1.8) BS02 G4P 2.4.2.22 GO:0000310 ... P42085 N/A
    64647 1y0b:B (1.8) BS01 G4P 2.4.2.22 GO:0000310 ... P42085 N/A
    64648 1y0b:B (1.8) BS02 G4P 2.4.2.22 GO:0000310 ... P42085 N/A
    64649 1y0b:C (1.8) BS01 G4P 2.4.2.22 GO:0000310 ... P42085 N/A
    64650 1y0b:C (1.8) BS02 G4P 2.4.2.22 GO:0000310 ... P42085 N/A
    64651 1y0b:D (1.8) BS01 G4P 2.4.2.22 GO:0000310 ... P42085 N/A
    64652 1y0b:D (1.8) BS02 G4P 2.4.2.22 GO:0000310 ... P42085 N/A
    64653 1y0c:A (2.3) BS01 HEM ? GO:0004601 ... P69905 15835899
    64654 1y0c:B (2.3) BS01 HEM ? GO:0004601 ... P68871 15835899
    64655 1y0c:C (2.3) BS01 HEM ? GO:0004601 ... P69905 15835899
    64656 1y0c:D (2.3) BS01 HEM ? GO:0004601 ... P68871 15835899
    64657 1y0d:A (2.1) BS01 HEM ? GO:0004601 ... P69905 15835899
    64658 1y0d:B (2.1) BS01 HEM ? GO:0004601 ... P68871 15835899
    64659 1y0d:C (2.1) BS01 HEM ? GO:0004601 ... P69905 15835899
    64660 1y0d:D (2.1) BS01 HEM ? GO:0004601 ... P68871 15835899
    64661 1y0g:A (2.2) BS01 8PP ? N/A P0A8X2 N/A
    64662 1y0g:B (2.2) BS01 8PP ? N/A P0A8X2 N/A
    64663 1y0g:C (2.2) BS01 8PP ? N/A P0A8X2 N/A
    64664 1y0g:D (2.2) BS01 8PP ? N/A P0A8X2 N/A
    64665 1y0j:A (-1.00) BS01 ZN ? GO:0003700 ... P17679 15644435
    64666 1y0j:B (-1.00) BS01 ZN ? GO:0006357 ... Q9VPQ6 15644435
    64667 1y0l:A (2.5) BS01 HAN N/A N/A N/A 15788533 MOAD: Kd~1nM
    64668 1y0l:B (2.5) BS01 HAN N/A N/A N/A 15788533
    64669 1y0l:C (2.5) BS01 HAN N/A N/A N/A 15788533
    64670 1y0l:D (2.5) BS01 HAN N/A N/A N/A 15788533 MOAD: Kd~1nM
    64671 1y0l:F (2.5) BS01 HAN N/A N/A N/A 15788533 MOAD: Kd~1nM
    64672 1y0l:H (2.5) BS01 HAN N/A N/A N/A 15788533 MOAD: Kd~1nM
    64673 1y0l:L (2.5) BS01 HAN N/A N/A N/A 15788533
    64674 1y0p:A (1.5) BS01 HEM 1.3.2.4 GO:0009055 ... P0C278 N/A
    64675 1y0p:A (1.5) BS02 HEM 1.3.2.4 GO:0009055 ... P0C278 N/A
    64676 1y0p:A (1.5) BS03 HEM 1.3.2.4 GO:0009055 ... P0C278 N/A
    64677 1y0p:A (1.5) BS04 HEM 1.3.2.4 GO:0009055 ... P0C278 N/A
    64678 1y0p:A (1.5) BS05 FAD 1.3.2.4 GO:0009055 ... P0C278 N/A
    64679 1y0p:A (1.5) BS06 MEZ 1.3.2.4 GO:0009055 ... P0C278 N/A
    64680 1y0r:A (1.75) BS01 ZN 3.4.11.- N/A O59196 15713475
    64681 1y0r:A (1.75) BS02 ZN 3.4.11.- N/A O59196 15713475
    64682 1y0s:A (2.65) BS01 331 ? GO:0003677 ... Q03181 10809235
    64683 1y0s:A (2.65) BS02 B7G ? GO:0003677 ... Q03181 10809235
    64684 1y0s:B (2.65) BS01 331 ? GO:0003677 ... Q03181 10809235
    64685 1y0s:B (2.65) BS02 B7G ? GO:0003677 ... Q03181 10809235
    64686 1y0t:A (2.14) BS01 HEM ? GO:0004601 ... P69905 15835899
    64687 1y0t:B (2.14) BS01 HEM ? GO:0004601 ... P68871 15835899
    64688 1y0t:C (2.14) BS01 HEM ? GO:0004601 ... P69905 15835899
    64689 1y0t:D (2.14) BS01 HEM ? GO:0004601 ... P68871 15835899
    64690 1y0v:A (3.6) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    64691 1y0v:A (3.6) BS02 POP 4.6.1.1 GO:0003824 ... P40136 15719022
    64692 1y0v:B (3.6) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    64693 1y0v:B (3.6) BS02 POP 4.6.1.1 GO:0003824 ... P40136 15719022
    64694 1y0v:C (3.6) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    64695 1y0v:C (3.6) BS02 POP 4.6.1.1 GO:0003824 ... P40136 15719022
    64696 1y0v:D (3.6) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    64697 1y0v:D (3.6) BS02 POP 4.6.1.1 GO:0003824 ... P40136 15719022
    64698 1y0v:E (3.6) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    64699 1y0v:E (3.6) BS02 POP 4.6.1.1 GO:0003824 ... P40136 15719022
    64700 1y0v:F (3.6) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    64701 1y0v:F (3.6) BS02 POP 4.6.1.1 GO:0003824 ... P40136 15719022
    64702 1y0v:H (3.6) BS01 CA ? GO:0005102 ... P0DP33 15719022
    64703 1y0v:H (3.6) BS02 CA ? GO:0005102 ... P0DP33 15719022
    64704 1y0v:H (3.6) BS03 CA ? GO:0005102 ... P0DP33 15719022
    64705 1y0v:I (3.6) BS01 CA ? GO:0005102 ... P0DP33 15719022
    64706 1y0v:I (3.6) BS02 CA ? GO:0005102 ... P0DP33 15719022
    64707 1y0v:I (3.6) BS03 CA ? GO:0005102 ... P0DP33 15719022
    64708 1y0v:J (3.6) BS01 CA ? GO:0005102 ... P0DP33 15719022
    64709 1y0v:J (3.6) BS02 CA ? GO:0005102 ... P0DP33 15719022
    64710 1y0v:J (3.6) BS03 CA ? GO:0005102 ... P0DP33 15719022
    64711 1y0v:K (3.6) BS01 CA ? GO:0005102 ... P0DP33 15719022
    64712 1y0v:K (3.6) BS02 CA ? GO:0005102 ... P0DP33 15719022
    64713 1y0v:K (3.6) BS03 CA ? GO:0005102 ... P0DP33 15719022
    64714 1y0v:L (3.6) BS01 CA ? GO:0005102 ... P0DP33 15719022
    64715 1y0v:L (3.6) BS02 CA ? GO:0005102 ... P0DP33 15719022
    64716 1y0v:L (3.6) BS03 CA ? GO:0005102 ... P0DP33 15719022
    64717 1y0v:M (3.6) BS01 CA ? GO:0005102 ... P0DP33 15719022
    64718 1y0v:M (3.6) BS02 CA ? GO:0005102 ... P0DP33 15719022
    64719 1y0v:M (3.6) BS03 CA ? GO:0005102 ... P0DP33 15719022
    64720 1y0w:A (2.14) BS01 HEM ? GO:0004601 ... P69905 15835899
    64721 1y0w:B (2.14) BS01 HEM ? GO:0004601 ... P68871 15835899
    64722 1y0w:C (2.14) BS01 HEM ? GO:0004601 ... P69905 15835899
    64723 1y0w:D (2.14) BS01 HEM ? GO:0004601 ... P68871 15835899
    64724 1y0x:X (3.1) BS01 T44 ? GO:0003677 ... P10828 15466465 BindingDB: EC50=240nM
    64725 1y0y:A (1.6) BS01 peptide 3.4.11.- N/A O59196 15713475
    64726 1y0y:A (1.6) BS02 ZN 3.4.11.- N/A O59196 15713475
    64727 1y0y:A (1.6) BS03 ZN 3.4.11.- N/A O59196 15713475
    64728 1y0z:A (2.4) BS01 FE2 1.-.-.- GO:0003674 ... Q9LIG0 16511070
    64729 1y0z:B (2.4) BS01 FE2 1.-.-.- GO:0003674 ... Q9LIG0 16511070
    64730 1y10:A (2.3) BS01 CA 4.6.1.1 GO:0004016 ... P9WMU9 15890882
    64731 1y10:B (2.3) BS01 CA 4.6.1.1 GO:0004016 ... P9WMU9 15890882
    64732 1y10:C (2.3) BS01 CA 4.6.1.1 GO:0004016 ... P9WMU9 15890882
    64733 1y10:D (2.3) BS01 CA 4.6.1.1 GO:0004016 ... P9WMU9 15890882
    64734 1y13:A (2.2) BS01 ZN 4.2.3.12 GO:0003874 ... C6KTB6 N/A
    64735 1y13:A (2.2) BS02 BIO 4.2.3.12 GO:0003874 ... C6KTB6 N/A
    64736 1y13:A (2.2) BS03 BIO 4.2.3.12 GO:0003874 ... C6KTB6 N/A
    64737 1y13:B (2.2) BS01 ZN 4.2.3.12 GO:0003874 ... C6KTB6 N/A
    64738 1y13:B (2.2) BS02 BIO 4.2.3.12 GO:0003874 ... C6KTB6 N/A
    64739 1y13:B (2.2) BS03 BIO 4.2.3.12 GO:0003874 ... C6KTB6 N/A
    64740 1y13:C (2.2) BS01 BIO 4.2.3.12 GO:0003874 ... C6KTB6 N/A
    64741 1y13:C (2.2) BS02 ZN 4.2.3.12 GO:0003874 ... C6KTB6 N/A
    64742 1y13:C (2.2) BS03 BIO 4.2.3.12 GO:0003874 ... C6KTB6 N/A
    64743 1y17:A (2.4) BS01 CA ? GO:0005576 ... Q9DEF9 N/A
    64744 1y17:B (2.4) BS01 CA ? GO:0005576 ... Q9DEF8 N/A
    64745 1y18:A (2.8) BS01 HAN N/A N/A N/A 15788533
    64746 1y18:B (2.8) BS01 HAN N/A N/A N/A 15788533
    64747 1y18:C (2.8) BS01 HAN N/A N/A N/A 15788533
    64748 1y18:D (2.8) BS01 HAN N/A N/A N/A 15788533
    64749 1y18:E (2.8) BS01 HAN N/A N/A N/A 15788533
    64750 1y18:H (2.8) BS01 HAN N/A N/A N/A 15788533
    64751 1y18:L (2.8) BS01 HAN N/A N/A N/A 15788533
    64752 1y19:B (2.6) BS01 peptide ? N/A P26039 15623515
    64753 1y19:B (2.6) BS02 peptide ? N/A P26039 15623515
    64754 1y19:D (2.6) BS01 peptide ? N/A P26039 15623515
    64755 1y19:D (2.6) BS02 peptide ? N/A P26039 15623515
    64756 1y19:F (2.6) BS01 peptide ? N/A P26039 15623515
    64757 1y19:F (2.6) BS02 peptide ? N/A P26039 15623515
    64758 1y19:H (2.6) BS01 peptide ? N/A P26039 15623515
    64759 1y19:H (2.6) BS02 peptide ? N/A P26039 15623515
    64760 1y19:J (2.6) BS01 peptide ? N/A P26039 15623515
    64761 1y19:J (2.6) BS02 peptide ? N/A P26039 15623515
    64762 1y19:L (2.6) BS01 peptide ? N/A P26039 15623515
    64763 1y19:L (2.6) BS02 peptide ? N/A P26039 15623515
    64764 1y1a:A (2.3) BS01 CA ? GO:0000287 ... Q99828 15840829
    64765 1y1a:A (2.3) BS02 CA ? GO:0000287 ... Q99828 15840829
    64766 1y1a:A (2.3) BS03 CA ? GO:0000287 ... Q99828 15840829
    64767 1y1a:B (2.3) BS01 CA ? GO:0000287 ... Q99828 15840829
    64768 1y1a:B (2.3) BS02 CA ? GO:0000287 ... Q99828 15840829
    64769 1y1a:B (2.3) BS03 CA ? GO:0000287 ... Q99828 15840829
    64770 1y1a:B (2.3) BS04 GSH ? GO:0000287 ... Q99828 15840829
    64771 1y1d:A (1.7) BS01 FHI ? GO:0001523 ... P02766 15689188 BindingDB: Kd=320nM
    64772 1y1e:X (1.73) BS01 CA 1.8.3.7 N/A Q8NBK3 15907468
    64773 1y1e:X (1.73) BS02 CA 1.8.3.7 N/A Q8NBK3 15907468
    64774 1y1f:X (1.8) BS01 CA 1.8.3.7 N/A Q8NBK3 15907468
    64775 1y1f:X (1.8) BS02 CA 1.8.3.7 N/A Q8NBK3 15907468
    64776 1y1g:X (1.67) BS01 CA 1.8.3.7 N/A Q8NBK3 15907468
    64777 1y1g:X (1.67) BS02 CA 1.8.3.7 N/A Q8NBK3 15907468
    64778 1y1i:X (2.61) BS01 CA 1.8.3.7 N/A Q8NBK3 15907468
    64779 1y1i:X (2.61) BS02 CA 1.8.3.7 N/A Q8NBK3 15907468
    64780 1y1j:X (1.55) BS01 CA 1.8.3.7 N/A Q8NBK3 15907468
    64781 1y1j:X (1.55) BS02 CA 1.8.3.7 N/A Q8NBK3 15907468
    64782 1y1k:E (1.56) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15865427
    64783 1y1m:A (1.8) BS01 AC5 ? GO:0015276 ... P35439 15996549 MOAD: Ki=15.3mM
    64784 1y1m:B (1.8) BS01 AC5 ? GO:0015276 ... P35439 15996549 MOAD: Ki=15.3mM
    64785 1y1p:A (1.6) BS01 NMN 1.1.1.2 GO:0008106 ... Q9UUN9 16095619
    64786 1y1p:A (1.6) BS02 AMP 1.1.1.2 GO:0008106 ... Q9UUN9 16095619
    64787 1y1p:B (1.6) BS01 NMN 1.1.1.2 GO:0008106 ... Q9UUN9 16095619
    64788 1y1p:B (1.6) BS02 AMP 1.1.1.2 GO:0008106 ... Q9UUN9 16095619
    64789 1y1q:C (2.35) BS01 U 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    64790 1y1r:B (2.11) BS01 BJE 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    64791 1y1r:D (2.11) BS01 BJE 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    64792 1y1r:D (2.11) BS02 BJE 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    64793 1y1s:A (2.55) BS01 URA 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    64794 1y1s:B (2.55) BS01 URA 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    64795 1y1s:D (2.55) BS01 URA 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    64796 1y1s:E (2.55) BS01 URA 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    64797 1y1s:F (2.55) BS01 URA 2.4.2.3 GO:0003824 ... P0A1F6 N/A
    64798 1y1v:A (3.8) BS01 ZN 2.7.7.6 GO:0001172 ... P04050 15610738
    64799 1y1v:A (3.8) BS02 ZN 2.7.7.6 GO:0001172 ... P04050 15610738
    64800 1y1v:B (3.8) BS01 ZN 2.7.7.6 GO:0001172 ... P08518 15610738

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).