SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    64801 1y1v:C (3.8) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 15610738
    64802 1y1v:I (3.8) BS01 ZN 2.7.7.6 GO:0001172 ... P27999 15610738
    64803 1y1v:I (3.8) BS02 ZN 2.7.7.6 GO:0001172 ... P27999 15610738
    64804 1y1v:J (3.8) BS01 ZN 2.7.7.6 GO:0001172 ... P22139 15610738
    64805 1y1v:L (3.8) BS01 ZN 2.7.7.6 GO:0001172 ... P40422 15610738
    64806 1y1v:S (3.8) BS01 ZN ? GO:0003676 ... P07273 15610738
    64807 1y1w:A (4.0) BS01 dna 2.7.7.6 GO:0001172 ... P04050 15610738
    64808 1y1w:A (4.0) BS02 rna 2.7.7.6 GO:0001172 ... P04050 15610738
    64809 1y1w:A (4.0) BS03 ZN 2.7.7.6 GO:0001172 ... P04050 15610738
    64810 1y1w:A (4.0) BS04 MG 2.7.7.6 GO:0001172 ... P04050 15610738
    64811 1y1w:B (4.0) BS01 dna 2.7.7.6 GO:0001172 ... P08518 15610738
    64812 1y1w:B (4.0) BS02 dna 2.7.7.6 GO:0001172 ... P08518 15610738
    64813 1y1w:B (4.0) BS03 rna 2.7.7.6 GO:0001172 ... P08518 15610738
    64814 1y1w:B (4.0) BS04 ZN 2.7.7.6 GO:0001172 ... P08518 15610738
    64815 1y1w:C (4.0) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 15610738
    64816 1y1w:I (4.0) BS01 ZN 2.7.7.6 GO:0001172 ... P27999 15610738
    64817 1y1w:J (4.0) BS01 ZN 2.7.7.6 GO:0001172 ... P22139 15610738
    64818 1y1w:L (4.0) BS01 ZN 2.7.7.6 GO:0001172 ... P40422 15610738
    64819 1y1x:A (1.95) BS01 CA ? GO:0005509 ... Q4QG08 N/A
    64820 1y1x:A (1.95) BS02 CA ? GO:0005509 ... Q4QG08 N/A
    64821 1y1x:B (1.95) BS01 CA ? GO:0005509 ... Q4QG08 N/A
    64822 1y1x:B (1.95) BS02 CA ? GO:0005509 ... Q4QG08 N/A
    64823 1y1z:A (1.5) BS01 192 ? GO:0015276 ... P35439 15996549 MOAD: Ki=0.831mM
    64824 1y20:A (1.4) BS01 1AC ? GO:0015276 ... P35439 15996549 MOAD: Ki=4.8uM
    64825 1y21:A (1.75) BS01 NO ? GO:0004439 ... O76745 15637157
    64826 1y21:A (1.75) BS02 HEM ? GO:0004439 ... O76745 15637157
    64827 1y22:A (2.16) BS01 HEM ? GO:0004601 ... P69905 15835899
    64828 1y22:B (2.16) BS01 HEM ? GO:0004601 ... P68871 15835899
    64829 1y22:C (2.16) BS01 HEM ? GO:0004601 ... P69905 15835899
    64830 1y22:D (2.16) BS01 HEM ? GO:0004601 ... P68871 15835899
    64831 1y23:A (2.3) BS01 ZN ? GO:0003824 ... O07513 N/A
    64832 1y23:B (2.3) BS01 ZN ? GO:0003824 ... O07513 N/A
    64833 1y23:B (2.3) BS02 MG ? GO:0003824 ... O07513 N/A
    64834 1y23:C (2.3) BS01 ZN ? GO:0003824 ... O07513 N/A
    64835 1y23:D (2.3) BS01 ZN ? GO:0003824 ... O07513 N/A
    64836 1y23:E (2.3) BS01 ZN ? GO:0003824 ... O07513 N/A
    64837 1y25:A (2.1) BS01 ACT 1.11.1.24 GO:0004601 ... P9WG35 16627951
    64838 1y25:B (2.1) BS01 ACT 1.11.1.24 GO:0004601 ... P9WG35 16627951
    64839 1y28:A (2.1) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 12820879
    64840 1y2a:C (2.2) BS01 peptide ? N/A P52293 15611084
    64841 1y2b:A (1.4) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 15685167
    64842 1y2b:A (1.4) BS02 DEE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=82uM
    BindingDB: IC50=82000nM
    64843 1y2b:B (1.4) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 15685167
    64844 1y2b:B (1.4) BS02 DEE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=82uM
    BindingDB: IC50=82000nM
    64845 1y2c:A (1.67) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 15685167
    64846 1y2c:A (1.67) BS02 3DE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=0.27uM
    64847 1y2c:B (1.67) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 15685167
    64848 1y2c:B (1.67) BS02 3DE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=0.27uM
    64849 1y2d:A (1.7) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 15685167
    64850 1y2d:A (1.7) BS02 4DE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=2uM
    BindingDB: IC50=2000nM
    64851 1y2d:B (1.7) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 15685167
    64852 1y2d:B (1.7) BS02 4DE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=2uM
    BindingDB: IC50=2000nM
    64853 1y2e:A (2.1) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 15685167
    64854 1y2e:A (2.1) BS02 5DE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=0.16uM
    BindingDB: IC50=160nM
    64855 1y2e:B (2.1) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 15685167
    64856 1y2e:B (2.1) BS02 5DE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=0.16uM
    BindingDB: IC50=160nM
    64857 1y2f:A (2.0) BS01 WAI ? GO:0016020 ... P77173 15743191 MOAD: Kd=12uM
    BindingDB: Ki=12000nM, Kd=12000nM
    64858 1y2g:A (1.9) BS01 CL3 ? GO:0016020 ... P77173 15743191 MOAD: Kd=83.1uM
    BindingDB: Kd=83100nM
    64859 1y2h:A (2.4) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343 15685167
    64860 1y2h:A (2.4) BS02 6DE 3.1.4.53 GO:0004114 ... Q07343 15685167 MOAD: ic50=0.056uM
    BindingDB: IC50=56nM
    64861 1y2h:B (2.4) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343 15685167
    64862 1y2h:B (2.4) BS02 6DE 3.1.4.53 GO:0004114 ... Q07343 15685167 MOAD: ic50=0.056uM
    BindingDB: IC50=56nM
    64863 1y2j:A (2.55) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343 15685167
    64864 1y2j:A (2.55) BS02 7DE 3.1.4.53 GO:0004114 ... Q07343 15685167 BindingDB: IC50=33nM
    64865 1y2j:B (2.55) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343 15685167
    64866 1y2j:B (2.55) BS02 7DE 3.1.4.53 GO:0004114 ... Q07343 15685167 BindingDB: IC50=33nM
    64867 1y2k:A (1.36) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 15685167
    64868 1y2k:A (1.36) BS02 7DE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=0.021uM
    BindingDB: IC50=21nM
    64869 1y2k:B (1.36) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 15685167
    64870 1y2k:B (1.36) BS02 7DE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=0.021uM
    BindingDB: IC50=21nM
    64871 1y2u:A (1.85) BS01 GAL ? N/A Q00022 15596442
    64872 1y2u:B (1.85) BS01 GAL ? N/A Q00022 15596442
    64873 1y2v:A (1.9) BS01 GAL ? N/A Q00022 15596442
    64874 1y2v:B (1.9) BS01 GAL ? N/A Q00022 15596442
    64875 1y2w:A (1.74) BS01 GAL ? N/A Q00022 15596442
    64876 1y2w:B (1.74) BS01 GAL ? N/A Q00022 15596442
    64877 1y2x:A (2.36) BS01 GAL ? N/A Q00022 15596442
    64878 1y2x:B (2.36) BS01 GAL ? N/A Q00022 15596442
    64879 1y2x:C (2.36) BS01 GAL ? N/A Q00022 15596442
    64880 1y2x:D (2.36) BS01 GAL ? N/A Q00022 15596442
    64881 1y2z:A (2.07) BS01 HEM ? GO:0004601 ... P69905 15835899
    64882 1y2z:B (2.07) BS01 HEM ? GO:0004601 ... P68871 15835899
    64883 1y2z:C (2.07) BS01 HEM ? GO:0004601 ... P69905 15835899
    64884 1y2z:D (2.07) BS01 HEM ? GO:0004601 ... P68871 15835899
    64885 1y30:A (2.2) BS01 FMN 1.-.-.- GO:0010181 ... O06553 16239726
    64886 1y31:A (2.13) BS01 HEM ? GO:0004601 ... P69905 15835899
    64887 1y31:B (2.13) BS01 HEM ? GO:0004601 ... P68871 15835899
    64888 1y31:C (2.13) BS01 HEM ? GO:0004601 ... P69905 15835899
    64889 1y31:D (2.13) BS01 HEM ? GO:0004601 ... P68871 15835899
    64890 1y33:E (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15865427
    64891 1y34:E (1.55) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15865427
    64892 1y35:A (2.12) BS01 HEM ? GO:0004601 ... P69905 15835899
    64893 1y35:B (2.12) BS01 HEM ? GO:0004601 ... P68871 15835899
    64894 1y35:C (2.12) BS01 HEM ? GO:0004601 ... P69905 15835899
    64895 1y35:D (2.12) BS01 HEM ? GO:0004601 ... P68871 15835899
    64896 1y37:A (1.5) BS01 MG 3.8.1.3 GO:0003824 ... Q1JU72 N/A
    64897 1y37:B (1.5) BS01 MG 3.8.1.3 GO:0003824 ... Q1JU72 N/A
    64898 1y38:A (2.44) BS01 G3P 3.1.1.4 GO:0004623 ... P59071 N/A
    64899 1y38:B (2.44) BS01 G3P 3.1.1.4 GO:0004623 ... P59071 N/A
    64900 1y39:A (2.8) BS01 rna ? GO:0003735 ... P56210 15734647
    64901 1y39:B (2.8) BS01 rna ? GO:0003735 ... P56210 15734647
    64902 1y3a:A (2.5) BS01 peptide ? GO:0000132 ... P63096 16004878
    64903 1y3a:A (2.5) BS02 GDP ? GO:0000132 ... P63096 16004878
    64904 1y3a:B (2.5) BS01 peptide ? GO:0000132 ... P63096 16004878
    64905 1y3a:B (2.5) BS02 GDP ? GO:0000132 ... P63096 16004878
    64906 1y3a:C (2.5) BS01 peptide ? GO:0000132 ... P63096 16004878
    64907 1y3a:C (2.5) BS02 GDP ? GO:0000132 ... P63096 16004878
    64908 1y3a:D (2.5) BS01 peptide ? GO:0000132 ... P63096 16004878
    64909 1y3a:D (2.5) BS02 peptide ? GO:0000132 ... P63096 16004878
    64910 1y3a:D (2.5) BS03 GDP ? GO:0000132 ... P63096 16004878
    64911 1y3b:E (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15865427
    64912 1y3c:E (1.69) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15865427
    64913 1y3d:E (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15865427
    64914 1y3f:E (1.72) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15865427
    64915 1y3g:E (2.1) BS01 CA 3.4.24.27 GO:0004222 ... P00800 16342943
    64916 1y3g:E (2.1) BS02 CA 3.4.24.27 GO:0004222 ... P00800 16342943
    64917 1y3g:E (2.1) BS03 CA 3.4.24.27 GO:0004222 ... P00800 16342943
    64918 1y3g:E (2.1) BS04 CA 3.4.24.27 GO:0004222 ... P00800 16342943
    64919 1y3g:E (2.1) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 16342943
    64920 1y3g:E (2.1) BS06 AMM 3.4.24.27 GO:0004222 ... P00800 16342943
    64921 1y3g:E (2.1) BS07 LEU 3.4.24.27 GO:0004222 ... P00800 16342943
    64922 1y3i:A (2.6) BS01 NAD 2.7.1.23 GO:0003951 ... P9WHV7 15629142
    64923 1y3i:B (2.6) BS01 NAD 2.7.1.23 GO:0003951 ... P9WHV7 15629142
    64924 1y3j:A (-1.00) BS01 CU 7.2.2.8 GO:0046872 ... Q04656 15670166
    64925 1y3n:A (1.6) BS01 MAV ? N/A A0ACD6B942 15794643
    64926 1y3n:A (1.6) BS02 BEM ? N/A A0ACD6B942 15794643
    64927 1y3n:A (1.6) BS03 CA ? N/A A0ACD6B942 15794643
    64928 1y3p:A (2.0) BS01 MAV ? N/A A0ACD6B942 15794643
    64929 1y3p:A (2.0) BS02 MAV ? N/A A0ACD6B942 15794643
    64930 1y3p:A (2.0) BS03 BEM ? N/A A0ACD6B942 15794643
    64931 1y3p:A (2.0) BS04 CA ? N/A A0ACD6B942 15794643
    64932 1y3q:A (1.9) BS01 CA ? N/A A0ACD6B942 15794643
    64933 1y3t:A (2.4) BS01 FE 1.13.11.24 GO:0008127 ... P42106 15628860
    64934 1y3t:A (2.4) BS02 FE 1.13.11.24 GO:0008127 ... P42106 15628860
    64935 1y3t:B (2.4) BS01 FE 1.13.11.24 GO:0008127 ... P42106 15628860
    64936 1y3t:B (2.4) BS02 FE 1.13.11.24 GO:0008127 ... P42106 15628860
    64937 1y3u:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    64938 1y3u:A (1.8) BS02 UIQ 3.4.21.4 GO:0004175 ... P00760 N/A
    64939 1y3v:A (1.6) BS01 CA 3.4.21.4 GO:0004175 ... P00760 16374786
    64940 1y3v:A (1.6) BS02 UIR 3.4.21.4 GO:0004175 ... P00760 16374786 MOAD: Ki=2300nM
    64941 1y3w:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 16374786
    64942 1y3w:A (1.8) BS02 UIP 3.4.21.4 GO:0004175 ... P00760 16374786 MOAD: Ki=1680nM
    64943 1y3x:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 16374786
    64944 1y3x:A (1.7) BS02 UIB 3.4.21.4 GO:0004175 ... P00760 16374786 MOAD: Ki=7315nM
    64945 1y3y:A (1.75) BS01 CA 3.4.21.4 GO:0004175 ... P00760 16374786
    64946 1y3y:A (1.75) BS02 UIR 3.4.21.4 GO:0004175 ... P00760 16374786 MOAD: Ki=2300nM
    64947 1y42:X (1.95) BS01 TYR 6.1.1.1 GO:0000166 ... P12063 15694342
    64948 1y44:A (2.1) BS01 ZN 3.1.26.11 GO:0008033 ... P54548 15654328
    64949 1y44:A (2.1) BS02 ZN 3.1.26.11 GO:0008033 ... P54548 15654328
    64950 1y45:A (2.0) BS01 HEM ? GO:0004601 ... P69905 15835899
    64951 1y45:B (2.0) BS01 HEM ? GO:0004601 ... P68871 15835899
    64952 1y45:C (2.0) BS01 HEM ? GO:0004601 ... P69905 15835899
    64953 1y45:D (2.0) BS01 HEM ? GO:0004601 ... P68871 15835899
    64954 1y46:A (2.22) BS01 HEM ? GO:0004601 ... P69905 15835899
    64955 1y46:B (2.22) BS01 HEM ? GO:0004601 ... P68871 15835899
    64956 1y46:C (2.22) BS01 HEM ? GO:0004601 ... P69905 15835899
    64957 1y46:D (2.22) BS01 HEM ? GO:0004601 ... P68871 15835899
    64958 1y48:E (1.84) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15865427
    64959 1y4a:E (1.6) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15865427
    64960 1y4b:A (2.1) BS01 HEM ? GO:0004601 ... P69905 15835899
    64961 1y4b:B (2.1) BS01 HEM ? GO:0004601 ... P68871 15835899
    64962 1y4b:C (2.1) BS01 HEM ? GO:0004601 ... P69905 15835899
    64963 1y4b:D (2.1) BS01 HEM ? GO:0004601 ... P68871 15835899
    64964 1y4c:A (1.9) BS01 GLC ? GO:0005515 ... P0AEX9 15684085
    64965 1y4c:A (1.9) BS02 GLC ? GO:0005515 ... P0AEX9 15684085
    64966 1y4d:E (2.0) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15865427
    64967 1y4f:A (2.0) BS01 HEM ? GO:0004601 ... P69905 15835899
    64968 1y4f:B (2.0) BS01 HEM ? GO:0004601 ... P68871 15835899
    64969 1y4f:C (2.0) BS01 HEM ? GO:0004601 ... P69905 15835899
    64970 1y4f:D (2.0) BS01 HEM ? GO:0004601 ... P68871 15835899
    64971 1y4g:A (1.91) BS01 HEM ? GO:0004601 ... P69905 15835899
    64972 1y4g:B (1.91) BS01 HEM ? GO:0004601 ... P68871 15835899
    64973 1y4g:C (1.91) BS01 HEM ? GO:0004601 ... P69905 15835899
    64974 1y4g:D (1.91) BS01 HEM ? GO:0004601 ... P68871 15835899
    64975 1y4j:A (1.864) BS01 CA ? GO:0004857 ... Q8NBJ7 15687489
    64976 1y4j:A (1.864) BS02 CA ? GO:0004857 ... Q8NBJ7 15687489
    64977 1y4j:B (1.864) BS01 CA ? GO:0004857 ... Q8NBJ7 15687489
    64978 1y4j:B (1.864) BS02 CA ? GO:0004857 ... Q8NBJ7 15687489
    64979 1y4k:A (1.95) BS01 FE2 1.13.11.12 GO:0005506 ... P08170 16922498
    64980 1y4l:A (1.7) BS01 SVR 3.1.1.4 GO:0004623 ... P24605 15961104
    64981 1y4l:B (1.7) BS01 SVR 3.1.1.4 GO:0004623 ... P24605 15961104
    64982 1y4p:A (1.98) BS01 HEM ? GO:0004601 ... P69905 15835899
    64983 1y4p:B (1.98) BS01 HEM ? GO:0004601 ... P68871 15835899
    64984 1y4p:C (1.98) BS01 HEM ? GO:0004601 ... P69905 15835899
    64985 1y4p:D (1.98) BS01 HEM ? GO:0004601 ... P68871 15835899
    64986 1y4q:A (2.11) BS01 HEM ? GO:0004601 ... P69905 15835899
    64987 1y4q:B (2.11) BS01 HEM ? GO:0004601 ... P68871 15835899
    64988 1y4q:C (2.11) BS01 HEM ? GO:0004601 ... P69905 15835899
    64989 1y4q:D (2.11) BS01 HEM ? GO:0004601 ... P68871 15835899
    64990 1y4r:A (2.22) BS01 HEM ? GO:0004601 ... P69905 15835899
    64991 1y4r:B (2.22) BS01 HEM ? GO:0004601 ... P68871 15835899
    64992 1y4r:C (2.22) BS01 HEM ? GO:0004601 ... P69905 15835899
    64993 1y4r:D (2.22) BS01 HEM ? GO:0004601 ... P68871 15835899
    64994 1y4s:A (2.9) BS01 ADP ? GO:0005515 ... P0A6Z3 15837196
    64995 1y4s:B (2.9) BS01 MG ? GO:0005515 ... P0A6Z3 15837196
    64996 1y4s:B (2.9) BS02 ADP ? GO:0005515 ... P0A6Z3 15837196
    64997 1y4t:A (1.8) BS01 FE ? GO:0030288 ... Q0PBW4 15613474
    64998 1y4t:D (1.8) BS01 FE ? GO:0030288 ... Q0PBW4 15613474
    64999 1y4v:A (1.84) BS01 HEM ? GO:0004601 ... P69905 15835899
    65000 1y4v:B (1.84) BS01 HEM ? GO:0004601 ... P68871 15835899

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).