SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    65601 1ydz:B (3.3) BS01 HEM ? GO:0004601 ... P68871 15835899
    65602 1ydz:B (3.3) BS02 OXY ? GO:0004601 ... P68871 15835899
    65603 1ydz:C (3.3) BS01 HEM ? GO:0004601 ... P69905 15835899
    65604 1ydz:D (3.3) BS01 HEM ? GO:0004601 ... P68871 15835899
    65605 1ydz:D (3.3) BS02 OXY ? GO:0004601 ... P68871 15835899
    65606 1ye0:A (2.5) BS01 HEM ? GO:0004601 ... P69905 15835899
    65607 1ye0:B (2.5) BS01 HEM ? GO:0004601 ... P68871 15835899
    65608 1ye0:B (2.5) BS02 OXY ? GO:0004601 ... P68871 15835899
    65609 1ye0:C (2.5) BS01 HEM ? GO:0004601 ... P69905 15835899
    65610 1ye0:C (2.5) BS02 OXY ? GO:0004601 ... P69905 15835899
    65611 1ye0:D (2.5) BS01 HEM ? GO:0004601 ... P68871 15835899
    65612 1ye0:D (2.5) BS02 OXY ? GO:0004601 ... P68871 15835899
    65613 1ye1:A (4.5) BS01 HEM ? GO:0004601 ... P69905 15835899
    65614 1ye1:B (4.5) BS01 HEM ? GO:0004601 ... P68871 15835899
    65615 1ye1:C (4.5) BS01 HEM ? GO:0004601 ... P69905 15835899
    65616 1ye1:D (4.5) BS01 HEM ? GO:0004601 ... P68871 15835899
    65617 1ye2:A (1.8) BS01 HEM ? GO:0004601 ... P69905 15835899
    65618 1ye2:B (1.8) BS01 HEM ? GO:0004601 ... P68871 15835899
    65619 1ye2:B (1.8) BS02 OXY ? GO:0004601 ... P68871 15835899
    65620 1ye2:C (1.8) BS01 HEM ? GO:0004601 ... P69905 15835899
    65621 1ye2:C (1.8) BS02 OXY ? GO:0004601 ... P69905 15835899
    65622 1ye2:D (1.8) BS01 HEM ? GO:0004601 ... P68871 15835899
    65623 1ye2:D (1.8) BS02 OXY ? GO:0004601 ... P68871 15835899
    65624 1ye3:A (1.59) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    65625 1ye3:A (1.59) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    65626 1ye4:A (2.4) BS01 NAD 1.1.1.307 GO:0016491 ... O74237 15670843
    65627 1ye4:B (2.4) BS01 NAD 1.1.1.307 GO:0016491 ... O74237 15670843
    65628 1ye4:C (2.4) BS01 NAD 1.1.1.307 GO:0016491 ... O74237 15670843
    65629 1ye4:D (2.4) BS01 NAD 1.1.1.307 GO:0016491 ... O74237 15670843
    65630 1ye6:A (2.3) BS01 NAP 1.1.1.307 GO:0016491 ... O74237 15670843
    65631 1ye6:B (2.3) BS01 NAD 1.1.1.307 GO:0016491 ... O74237 15670843
    65632 1ye6:C (2.3) BS01 NAP 1.1.1.307 GO:0016491 ... O74237 15670843
    65633 1ye6:D (2.3) BS01 NAD 1.1.1.307 GO:0016491 ... O74237 15670843
    65634 1ye9:A (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    65635 1ye9:B (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    65636 1ye9:C (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    65637 1ye9:D (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    65638 1ye9:E (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    65639 1ye9:F (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    65640 1ye9:G (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    65641 1ye9:H (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    65642 1ye9:I (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    65643 1ye9:J (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    65644 1ye9:K (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    65645 1ye9:L (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    65646 1ye9:M (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    65647 1ye9:N (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    65648 1ye9:O (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    65649 1ye9:P (2.8) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 15823018
    65650 1yea:A (1.9) BS01 HEC ? GO:0005739 ... P00045 1326054
    65651 1yeb:A (1.95) BS01 HEC ? GO:0005739 ... P00045 1326054
    65652 1yec:H (1.9) BS01 PNB ? N/A P01863 9027317
    65653 1yec:L (1.9) BS01 ZN N/A N/A N/A 9027317
    65654 1yec:L (1.9) BS02 PNB N/A N/A N/A 9027317
    65655 1yed:A (3.1) BS01 PNB N/A N/A N/A 9027317
    65656 1yed:B (3.1) BS01 PNB ? N/A P01868 9027317
    65657 1yed:H (3.1) BS01 PNB ? N/A P01868 9027317
    65658 1yed:L (3.1) BS01 PNB N/A N/A N/A 9027317
    65659 1yee:H (2.2) BS01 PNB ? N/A P01865 9027317
    65660 1yee:L (2.2) BS01 PNB N/A N/A N/A 9027317
    65661 1yef:H (2.0) BS01 PNC ? N/A P01863 9223277
    65662 1yef:L (2.0) BS01 ZN N/A N/A N/A 9223277
    65663 1yef:L (2.0) BS02 PNC N/A N/A N/A 9223277
    65664 1yeg:H (2.0) BS01 BPN ? N/A P01863 9223277
    65665 1yeg:L (2.0) BS01 ZN N/A N/A N/A 9223277
    65666 1yeg:L (2.0) BS02 BPN N/A N/A N/A 9223277
    65667 1yeh:L (2.55) BS01 ZN N/A N/A N/A 9223277
    65668 1yei:H (1.9) BS01 PGG N/A N/A P01863 9826512
    65669 1yei:L (1.9) BS01 ZN ? GO:0005576 ... Q58EU8 9826512
    65670 1yei:L (1.9) BS02 PGG ? GO:0005576 ... Q58EU8 9826512 MOAD: Kd=35nM
    65671 1yej:H (1.85) BS01 PNF N/A N/A P01863 9826512
    65672 1yej:L (1.85) BS01 ZN ? GO:0005576 ... Q58EU8 9826512
    65673 1yej:L (1.85) BS02 ZN ? GO:0005576 ... Q58EU8 9826512
    65674 1yej:L (1.85) BS03 PNF ? GO:0005576 ... Q58EU8 9826512 MOAD: Kd=35nM
    65675 1yek:H (2.1) BS01 NPO ? N/A P01863 9826512
    65676 1yek:L (2.1) BS01 ZN ? GO:0005576 ... Q58EU8 9826512
    65677 1yek:L (2.1) BS02 NPO ? GO:0005576 ... Q58EU8 9826512
    65678 1yen:A (2.8) BS01 HEM ? GO:0004601 ... P69905 15835899
    65679 1yen:B (2.8) BS01 HEM ? GO:0004601 ... P68871 15835899
    65680 1yen:B (2.8) BS02 OXY ? GO:0004601 ... P68871 15835899
    65681 1yen:C (2.8) BS01 HEM ? GO:0004601 ... P69905 15835899
    65682 1yen:D (2.8) BS01 HEM ? GO:0004601 ... P68871 15835899
    65683 1yen:D (2.8) BS02 OXY ? GO:0004601 ... P68871 15835899
    65684 1yeo:A (2.22) BS01 HEM ? GO:0004601 ... P69905 15835899
    65685 1yeo:B (2.22) BS01 HEM ? GO:0004601 ... P68871 15835899
    65686 1yeo:B (2.22) BS02 OXY ? GO:0004601 ... P68871 15835899
    65687 1yeo:C (2.22) BS01 HEM ? GO:0004601 ... P69905 15835899
    65688 1yeo:C (2.22) BS02 OXY ? GO:0004601 ... P69905 15835899
    65689 1yeo:D (2.22) BS01 HEM ? GO:0004601 ... P68871 15835899
    65690 1yeo:D (2.22) BS02 OXY ? GO:0004601 ... P68871 15835899
    65691 1yeq:A (2.75) BS01 HEM ? GO:0004601 ... P69905 15835899
    65692 1yeq:B (2.75) BS01 HEM ? GO:0004601 ... P68871 15835899
    65693 1yeq:B (2.75) BS02 OXY ? GO:0004601 ... P68871 15835899
    65694 1yeq:C (2.75) BS01 HEM ? GO:0004601 ... P69905 15835899
    65695 1yeq:C (2.75) BS02 OXY ? GO:0004601 ... P69905 15835899
    65696 1yeq:D (2.75) BS01 HEM ? GO:0004601 ... P68871 15835899
    65697 1yet:A (1.9) BS01 GDM 3.6.4.10 GO:0005524 ... P07900 9108479 BindingDB: IC50=42nM, Kd=714nM
    65698 1yeu:A (2.12) BS01 HEM ? GO:0004601 ... P69905 15835899
    65699 1yeu:B (2.12) BS01 HEM ? GO:0004601 ... P68871 15835899
    65700 1yeu:B (2.12) BS02 OXY ? GO:0004601 ... P68871 15835899
    65701 1yeu:C (2.12) BS01 HEM ? GO:0004601 ... P69905 15835899
    65702 1yeu:D (2.12) BS01 HEM ? GO:0004601 ... P68871 15835899
    65703 1yeu:D (2.12) BS02 OXY ? GO:0004601 ... P68871 15835899
    65704 1yev:A (2.11) BS01 HEM ? GO:0004601 ... P69905 15835899
    65705 1yev:B (2.11) BS01 HEM ? GO:0004601 ... P68871 15835899
    65706 1yev:B (2.11) BS02 OXY ? GO:0004601 ... P68871 15835899
    65707 1yev:C (2.11) BS01 HEM ? GO:0004601 ... P69905 15835899
    65708 1yev:C (2.11) BS02 OXY ? GO:0004601 ... P69905 15835899
    65709 1yev:D (2.11) BS01 HEM ? GO:0004601 ... P68871 15835899
    65710 1yev:D (2.11) BS02 OXY ? GO:0004601 ... P68871 15835899
    65711 1yew:A (2.801) BS01 CU 1.14.18.3 GO:0016020 ... G1UBD1 15674245
    65712 1yew:A (2.801) BS02 CUA 1.14.18.3 GO:0016020 ... G1UBD1 15674245
    65713 1yew:C (2.801) BS01 ZN ? N/A O05111 15674245
    65714 1yew:E (2.801) BS01 CU 1.14.18.3 GO:0016020 ... G1UBD1 15674245
    65715 1yew:E (2.801) BS02 ZN 1.14.18.3 GO:0016020 ... G1UBD1 15674245
    65716 1yew:E (2.801) BS03 CUA 1.14.18.3 GO:0016020 ... G1UBD1 15674245
    65717 1yew:G (2.801) BS01 ZN ? N/A O05111 15674245
    65718 1yew:I (2.801) BS01 CU 1.14.18.3 GO:0016020 ... G1UBD1 15674245
    65719 1yew:I (2.801) BS02 CUA 1.14.18.3 GO:0016020 ... G1UBD1 15674245
    65720 1yew:K (2.801) BS01 ZN ? N/A O05111 15674245
    65721 1yey:A (2.34) BS01 MG 4.2.1.68 GO:0000287 ... Q8P3K2 N/A
    65722 1yey:B (2.34) BS01 MG 4.2.1.68 GO:0000287 ... Q8P3K2 N/A
    65723 1yey:C (2.34) BS01 MG 4.2.1.68 GO:0000287 ... Q8P3K2 N/A
    65724 1yey:D (2.34) BS01 MG 4.2.1.68 GO:0000287 ... Q8P3K2 N/A
    65725 1yf3:A (2.29) BS01 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65726 1yf3:A (2.29) BS02 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65727 1yf3:A (2.29) BS03 SAH 2.1.1.72 GO:0003676 ... P04392 15882618
    65728 1yf3:B (2.29) BS01 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65729 1yf3:B (2.29) BS02 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65730 1yf3:B (2.29) BS03 SAH 2.1.1.72 GO:0003676 ... P04392 15882618
    65731 1yf4:A (1.98) BS01 peptide 3.4.21.4 GO:0004252 ... P00761 15854654
    65732 1yf4:A (1.98) BS02 CA 3.4.21.4 GO:0004252 ... P00761 15854654
    65733 1yf6:L (2.25) BS01 BCL ? GO:0009772 ... P0C0Y8 15865437
    65734 1yf6:L (2.25) BS02 BCL ? GO:0009772 ... P0C0Y8 15865437
    65735 1yf6:L (2.25) BS03 BPH ? GO:0009772 ... P0C0Y8 15865437
    65736 1yf6:L (2.25) BS04 U10 ? GO:0009772 ... P0C0Y8 15865437
    65737 1yf6:L (2.25) BS05 U10 ? GO:0009772 ... P0C0Y8 15865437
    65738 1yf6:L (2.25) BS06 FE2 ? GO:0009772 ... P0C0Y8 15865437
    65739 1yf6:L (2.25) BS07 BCL ? GO:0009772 ... P0C0Y8 15865437
    65740 1yf6:L (2.25) BS08 BCL ? GO:0009772 ... P0C0Y8 15865437
    65741 1yf6:M (2.25) BS01 BCL ? GO:0009772 ... P0C0Y9 15865437
    65742 1yf6:M (2.25) BS02 BPH ? GO:0009772 ... P0C0Y9 15865437
    65743 1yf6:M (2.25) BS03 FE2 ? GO:0009772 ... P0C0Y9 15865437
    65744 1yf6:M (2.25) BS04 BCL ? GO:0009772 ... P0C0Y9 15865437
    65745 1yf6:M (2.25) BS05 BCL ? GO:0009772 ... P0C0Y9 15865437
    65746 1yf6:M (2.25) BS06 BCL ? GO:0009772 ... P0C0Y9 15865437
    65747 1yf6:M (2.25) BS07 U10 ? GO:0009772 ... P0C0Y9 15865437
    65748 1yf6:M (2.25) BS08 SPO ? GO:0009772 ... P0C0Y9 15865437
    65749 1yf8:A (2.8) BS01 P6C 3.2.2.22 GO:0017148 ... Q6ITZ3 15774467
    65750 1yf8:B (2.8) BS01 GAL 3.2.2.22 N/A Q6ITZ3 15774467
    65751 1yf8:B (2.8) BS02 GAL 3.2.2.22 N/A Q6ITZ3 15774467
    65752 1yf8:B (2.8) BS03 GAL 3.2.2.22 N/A Q6ITZ3 15774467
    65753 1yfc:A (-1.00) BS01 HEC ? GO:0005515 ... P00044 8901521
    65754 1yfd:A (1.9) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 15634667
    65755 1yfd:B (1.9) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 15634667
    65756 1yff:A (2.4) BS01 HEM ? GO:0004601 ... P69905 N/A
    65757 1yff:B (2.4) BS01 HEM ? GO:0004601 ... P68871 N/A
    65758 1yff:C (2.4) BS01 HEM ? GO:0004601 ... P69905 N/A
    65759 1yff:D (2.4) BS01 HEM ? GO:0004601 ... P68871 N/A
    65760 1yff:E (2.4) BS01 HEM ? GO:0004601 ... P69905 N/A
    65761 1yff:F (2.4) BS01 HEM ? GO:0004601 ... P68871 N/A
    65762 1yff:G (2.4) BS01 HEM ? GO:0004601 ... P69905 N/A
    65763 1yff:H (2.4) BS01 HEM ? GO:0004601 ... P68871 N/A
    65764 1yfh:A (3.01) BS01 dna 2.1.1.63 GO:0003824 ... P16455 15964013
    65765 1yfh:A (3.01) BS02 dna 2.1.1.63 GO:0003824 ... P16455 15964013
    65766 1yfh:A (3.01) BS03 ZN 2.1.1.63 GO:0003824 ... P16455 15964013
    65767 1yfh:B (3.01) BS01 dna 2.1.1.63 GO:0003824 ... P16455 15964013
    65768 1yfh:B (3.01) BS02 dna 2.1.1.63 GO:0003824 ... P16455 15964013
    65769 1yfh:B (3.01) BS03 ZN 2.1.1.63 GO:0003824 ... P16455 15964013
    65770 1yfh:C (3.01) BS01 dna 2.1.1.63 GO:0003824 ... P16455 15964013
    65771 1yfh:C (3.01) BS02 dna 2.1.1.63 GO:0003824 ... P16455 15964013
    65772 1yfh:C (3.01) BS03 ZN 2.1.1.63 GO:0003824 ... P16455 15964013
    65773 1yfi:A (2.7) BS01 dna 3.1.21.4 GO:0003677 ... P11405 16195548
    65774 1yfi:A (2.7) BS02 dna 3.1.21.4 GO:0003677 ... P11405 16195548
    65775 1yfi:A (2.7) BS03 dna 3.1.21.4 GO:0003677 ... P11405 16195548
    65776 1yfi:B (2.7) BS01 dna 3.1.21.4 GO:0003677 ... P11405 16195548
    65777 1yfi:B (2.7) BS02 dna 3.1.21.4 GO:0003677 ... P11405 16195548
    65778 1yfj:A (2.69) BS01 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65779 1yfj:A (2.69) BS02 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65780 1yfj:A (2.69) BS03 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65781 1yfj:A (2.69) BS04 SAH 2.1.1.72 GO:0003676 ... P04392 15882618
    65782 1yfj:B (2.69) BS01 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65783 1yfj:B (2.69) BS02 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65784 1yfj:B (2.69) BS03 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65785 1yfj:B (2.69) BS04 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65786 1yfj:B (2.69) BS05 SAH 2.1.1.72 GO:0003676 ... P04392 15882618
    65787 1yfj:C (2.69) BS01 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65788 1yfj:C (2.69) BS02 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65789 1yfj:C (2.69) BS03 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65790 1yfj:C (2.69) BS04 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65791 1yfj:C (2.69) BS05 SAH 2.1.1.72 GO:0003676 ... P04392 15882618
    65792 1yfj:D (2.69) BS01 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65793 1yfj:D (2.69) BS02 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65794 1yfj:D (2.69) BS03 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65795 1yfj:D (2.69) BS04 SAH 2.1.1.72 GO:0003676 ... P04392 15882618
    65796 1yfj:E (2.69) BS01 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65797 1yfj:E (2.69) BS02 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65798 1yfj:E (2.69) BS03 SAH 2.1.1.72 GO:0003676 ... P04392 15882618
    65799 1yfj:F (2.69) BS01 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65800 1yfj:F (2.69) BS02 dna 2.1.1.72 GO:0003676 ... P04392 15882618

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).