SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    65801 1yfj:F (2.69) BS03 SAH 2.1.1.72 GO:0003676 ... P04392 15882618
    65802 1yfk:A (2.7) BS01 CL 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 15883004
    65803 1yfl:A (3.09) BS01 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65804 1yfl:A (3.09) BS02 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65805 1yfl:A (3.09) BS03 SFG 2.1.1.72 GO:0003676 ... P04392 15882618
    65806 1yfl:B (3.09) BS01 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65807 1yfl:B (3.09) BS02 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65808 1yfl:B (3.09) BS03 SFG 2.1.1.72 GO:0003676 ... P04392 15882618
    65809 1yfl:D (3.09) BS01 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65810 1yfl:D (3.09) BS02 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65811 1yfl:D (3.09) BS03 SFG 2.1.1.72 GO:0003676 ... P04392 15882618
    65812 1yfl:E (3.09) BS01 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65813 1yfl:E (3.09) BS02 dna 2.1.1.72 GO:0003676 ... P04392 15882618
    65814 1yfl:E (3.09) BS03 SFG 2.1.1.72 GO:0003676 ... P04392 15882618
    65815 1yfn:A (1.8) BS01 peptide ? N/A P0AFZ3 15880122
    65816 1yfn:B (1.8) BS01 peptide ? N/A P0AFZ3 15880122
    65817 1yfn:C (1.8) BS01 peptide ? N/A P0AFZ3 15880122
    65818 1yfn:C (1.8) BS02 peptide ? N/A P0AFZ3 15880122
    65819 1yfn:D (1.8) BS01 peptide ? N/A P0AFZ3 15880122
    65820 1yfq:A (1.1) BS01 CA ? GO:0000727 ... P26449 15644329
    65821 1yfq:A (1.1) BS02 CA ? GO:0000727 ... P26449 15644329
    65822 1yfr:A (2.15) BS01 MG 6.1.1.7 GO:0000166 ... O67323 15657145
    65823 1yfr:A (2.15) BS02 ATP 6.1.1.7 GO:0000166 ... O67323 15657145
    65824 1yfr:B (2.15) BS01 MG 6.1.1.7 GO:0000166 ... O67323 15657145
    65825 1yfr:B (2.15) BS02 MG 6.1.1.7 GO:0000166 ... O67323 15657145
    65826 1yfr:B (2.15) BS03 ATP 6.1.1.7 GO:0000166 ... O67323 15657145
    65827 1yfs:A (2.08) BS01 ALA 6.1.1.7 GO:0000166 ... O67323 15657145
    65828 1yfs:B (2.08) BS01 ALA 6.1.1.7 GO:0000166 ... O67323 15657145
    65829 1yfu:A (1.9) BS01 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    65830 1yfu:A (1.9) BS02 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    65831 1yfw:A (2.0) BS01 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    65832 1yfw:A (2.0) BS02 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    65833 1yfw:A (2.0) BS03 OXY 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    65834 1yfw:A (2.0) BS04 4AA 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    65835 1yfx:A (2.0) BS01 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    65836 1yfx:A (2.0) BS02 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    65837 1yfx:A (2.0) BS03 NO 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    65838 1yfx:A (2.0) BS04 4AA 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    65839 1yfy:A (3.2) BS01 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    65840 1yfy:A (3.2) BS02 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    65841 1yfy:A (3.2) BS03 3HA 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    65842 1yfz:A (2.2) BS01 MG 2.4.2.8 GO:0000287 ... Q8R7L0 15854655
    65843 1yfz:A (2.2) BS02 IMP 2.4.2.8 GO:0000287 ... Q8R7L0 15854655 MOAD: Ki=45uM
    65844 1yfz:B (2.2) BS01 MG 2.4.2.8 GO:0000287 ... Q8R7L0 15854655
    65845 1yfz:B (2.2) BS02 IMP 2.4.2.8 GO:0000287 ... Q8R7L0 15854655 MOAD: Ki=45uM
    65846 1yg5:A (2.7) BS01 HEM ? GO:0004601 ... P69905 15835899
    65847 1yg5:B (2.7) BS01 HEM ? GO:0004601 ... P68871 15835899
    65848 1yg5:B (2.7) BS02 OXY ? GO:0004601 ... P68871 15835899
    65849 1yg5:C (2.7) BS01 HEM ? GO:0004601 ... P69905 15835899
    65850 1yg5:C (2.7) BS02 OXY ? GO:0004601 ... P69905 15835899
    65851 1yg5:D (2.7) BS01 HEM ? GO:0004601 ... P68871 15835899
    65852 1yg5:D (2.7) BS02 OXY ? GO:0004601 ... P68871 15835899
    65853 1yg9:A (1.3) BS01 ZN 3.4.23.- GO:0004190 ... P54958 15811379
    65854 1ygb:A (2.48) BS01 SER 6.1.1.7 GO:0000166 ... O67323 15657145
    65855 1ygc:H (2.0) BS01 CA 3.4.21.21 GO:0004252 ... P08709 15632123
    65856 1ygc:H (2.0) BS02 905 3.4.21.21 GO:0004252 ... P08709 15632123 MOAD: Ki=0.35nM
    BindingDB: Ki=0.35nM
    65857 1ygd:A (2.73) BS01 ZNH ? GO:0004601 ... P69905 15835899
    65858 1ygd:B (2.73) BS01 HEM ? GO:0004601 ... P68871 15835899
    65859 1ygd:B (2.73) BS02 OXY ? GO:0004601 ... P68871 15835899
    65860 1ygd:C (2.73) BS01 ZNH ? GO:0004601 ... P69905 15835899
    65861 1ygd:D (2.73) BS01 HEM ? GO:0004601 ... P68871 15835899
    65862 1ygd:D (2.73) BS02 OXY ? GO:0004601 ... P68871 15835899
    65863 1yge:A (1.4) BS01 FE 1.13.11.12 GO:0005506 ... P08170 8718858
    65864 1ygf:A (2.7) BS01 HEM ? GO:0004601 ... P69905 15835899
    65865 1ygf:A (2.7) BS02 OXY ? GO:0004601 ... P69905 15835899
    65866 1ygf:B (2.7) BS01 HEM ? GO:0004601 ... P68871 15835899
    65867 1ygf:B (2.7) BS02 OXY ? GO:0004601 ... P68871 15835899
    65868 1ygf:C (2.7) BS01 HEM ? GO:0004601 ... P69905 15835899
    65869 1ygf:D (2.7) BS01 HEM ? GO:0004601 ... P68871 15835899
    65870 1ygf:D (2.7) BS02 OXY ? GO:0004601 ... P68871 15835899
    65871 1ygj:A (2.7) BS01 RMC 2.7.1.35 GO:0005829 ... P82197 15985434
    65872 1ygk:A (2.6) BS01 RRC 2.7.1.35 GO:0005829 ... P82197 15985434
    65873 1ygp:A (2.8) BS01 PO4 2.4.1.1 GO:0004645 ... P06738 8703213
    65874 1ygp:A (2.8) BS02 PO4 2.4.1.1 GO:0004645 ... P06738 8703213
    65875 1ygp:A (2.8) BS03 PLP 2.4.1.1 GO:0004645 ... P06738 8703213
    65876 1ygp:B (2.8) BS01 PO4 2.4.1.1 GO:0004645 ... P06738 8703213
    65877 1ygp:B (2.8) BS02 PO4 2.4.1.1 GO:0004645 ... P06738 8703213
    65878 1ygp:B (2.8) BS03 PLP 2.4.1.1 GO:0004645 ... P06738 8703213
    65879 1ygr:A (2.9) BS01 peptide 3.1.3.48 GO:0004725 ... P08575 15684325
    65880 1ygr:B (2.9) BS01 peptide 3.1.3.48 GO:0004725 ... P08575 15684325
    65881 1ygu:A (2.9) BS01 peptide 3.1.3.48 GO:0004725 ... P08575 15684325
    65882 1ygu:B (2.9) BS01 peptide 3.1.3.48 GO:0004725 ... P08575 15684325
    65883 1yh8:A (2.7) BS01 ZN 3.5.1.108 GO:0005737 ... O67648 15705580
    65884 1yh8:A (2.7) BS02 ZN 3.5.1.108 GO:0005737 ... O67648 15705580
    65885 1yh8:A (2.7) BS03 ZN 3.5.1.108 GO:0005737 ... O67648 15705580
    65886 1yh8:B (2.7) BS01 ZN 3.5.1.108 GO:0005737 ... O67648 15705580
    65887 1yh8:B (2.7) BS02 ZN 3.5.1.108 GO:0005737 ... O67648 15705580
    65888 1yh9:A (2.2) BS01 HEM ? GO:0004601 ... P69905 15835899
    65889 1yh9:B (2.2) BS01 HEM ? GO:0004601 ... P68871 15835899
    65890 1yh9:B (2.2) BS02 OXY ? GO:0004601 ... P68871 15835899
    65891 1yh9:C (2.2) BS01 HEM ? GO:0004601 ... P69905 15835899
    65892 1yh9:C (2.2) BS02 OXY ? GO:0004601 ... P69905 15835899
    65893 1yh9:D (2.2) BS01 HEM ? GO:0004601 ... P68871 15835899
    65894 1yh9:D (2.2) BS02 OXY ? GO:0004601 ... P68871 15835899
    65895 1yhc:A (2.1) BS01 ZN 3.5.1.108 GO:0005737 ... O67648 15705580
    65896 1yhc:A (2.1) BS02 ZN 3.5.1.108 GO:0005737 ... O67648 15705580
    65897 1yhc:A (2.1) BS03 ZN 3.5.1.108 GO:0005737 ... O67648 15705580
    65898 1yhc:A (2.1) BS04 CAC 3.5.1.108 GO:0005737 ... O67648 15705580
    65899 1yhc:B (2.1) BS01 ZN 3.5.1.108 GO:0005737 ... O67648 15705580
    65900 1yhc:B (2.1) BS02 ZN 3.5.1.108 GO:0005737 ... O67648 15705580
    65901 1yhc:B (2.1) BS03 CAC 3.5.1.108 GO:0005737 ... O67648 15705580
    65902 1yhe:A (2.1) BS01 HEM ? GO:0004601 ... P69905 15835899
    65903 1yhe:B (2.1) BS01 HEM ? GO:0004601 ... P68871 15835899
    65904 1yhe:B (2.1) BS02 OXY ? GO:0004601 ... P68871 15835899
    65905 1yhe:C (2.1) BS01 HEM ? GO:0004601 ... P69905 15835899
    65906 1yhe:D (2.1) BS01 HEM ? GO:0004601 ... P68871 15835899
    65907 1yhe:D (2.1) BS02 OXY ? GO:0004601 ... P68871 15835899
    65908 1yhj:A (2.8) BS01 R6C 2.7.1.35 GO:0005829 ... P82197 15985434
    65909 1yhl:A (1.95) BS01 MG ? GO:0004659 ... Q8WS26 16288456
    65910 1yhl:A (1.95) BS02 MG ? GO:0004659 ... Q8WS26 16288456
    65911 1yhl:A (1.95) BS03 DMA ? GO:0004659 ... Q8WS26 16288456
    65912 1yhl:A (1.95) BS04 RIS ? GO:0004659 ... Q8WS26 16288456 BindingDB: IC50=27nM
    65913 1yhm:A (2.5) BS01 MG 2.5.1.10 GO:0004659 ... Q8WS26 16288456
    65914 1yhm:A (2.5) BS02 MG 2.5.1.10 GO:0004659 ... Q8WS26 16288456
    65915 1yhm:A (2.5) BS03 AHD 2.5.1.10 GO:0004659 ... Q8WS26 16288456 MOAD: ic50=147uM
    65916 1yhm:A (2.5) BS04 IPE 2.5.1.10 GO:0004659 ... Q8WS26 16288456
    65917 1yhm:B (2.5) BS01 MG 2.5.1.10 GO:0004659 ... Q8WS26 16288456
    65918 1yhm:B (2.5) BS02 MG 2.5.1.10 GO:0004659 ... Q8WS26 16288456
    65919 1yhm:B (2.5) BS03 AHD 2.5.1.10 GO:0004659 ... Q8WS26 16288456 MOAD: ic50=147uM
    65920 1yhm:B (2.5) BS04 IPE 2.5.1.10 GO:0004659 ... Q8WS26 16288456
    65921 1yhm:C (2.5) BS01 MG 2.5.1.10 GO:0004659 ... Q8WS26 16288456
    65922 1yhm:C (2.5) BS02 MG 2.5.1.10 GO:0004659 ... Q8WS26 16288456
    65923 1yhm:C (2.5) BS03 AHD 2.5.1.10 GO:0004659 ... Q8WS26 16288456 MOAD: ic50=147uM
    65924 1yhm:C (2.5) BS04 IPE 2.5.1.10 GO:0004659 ... Q8WS26 16288456
    65925 1yhn:A (3.0) BS01 MG 3.6.5.2 GO:0000045 ... P51149 15933719
    65926 1yhn:A (3.0) BS02 GTP 3.6.5.2 GO:0000045 ... P51149 15933719
    65927 1yho:A (-1.00) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 16222560
    65928 1yho:A (-1.00) BS02 TRR 1.5.1.3 GO:0000900 ... P00374 16222560
    65929 1yhq:1 (2.4) BS01 rna ? GO:0003723 ... P32410 15851032
    65930 1yhq:2 (2.4) BS01 rna ? GO:0003735 ... P22452 15851032
    65931 1yhq:3 (2.4) BS01 rna ? GO:0003735 ... P32411 15851032
    65932 1yhq:A (2.4) BS01 rna ? GO:0002181 ... P20276 15851032
    65933 1yhq:A (2.4) BS02 MG ? GO:0002181 ... P20276 15851032
    65934 1yhq:A (2.4) BS03 MG ? GO:0002181 ... P20276 15851032
    65935 1yhq:B (2.4) BS01 rna ? GO:0003723 ... P20279 15851032
    65936 1yhq:C (2.4) BS01 rna ? GO:0003735 ... P12735 15851032
    65937 1yhq:D (2.4) BS01 rna ? GO:0000049 ... P14124 15851032
    65938 1yhq:D (2.4) BS02 rna ? GO:0000049 ... P14124 15851032
    65939 1yhq:E (2.4) BS01 rna ? GO:0002181 ... P14135 15851032
    65940 1yhq:F (2.4) BS01 rna ? GO:0001682 ... P12743 15851032
    65941 1yhq:H (2.4) BS01 rna ? GO:0003735 ... P60617 15851032
    65942 1yhq:I (2.4) BS01 rna ? GO:0003735 ... P14122 15851032
    65943 1yhq:J (2.4) BS01 rna ? GO:0003729 ... P29198 15851032
    65944 1yhq:K (2.4) BS01 rna ? GO:0003735 ... P22450 15851032
    65945 1yhq:L (2.4) BS01 rna ? GO:0003735 ... P12737 15851032
    65946 1yhq:M (2.4) BS01 rna ? GO:0002181 ... P60618 15851032
    65947 1yhq:N (2.4) BS01 rna ? GO:0000027 ... P14123 15851032
    65948 1yhq:N (2.4) BS02 rna ? GO:0000027 ... P14123 15851032
    65949 1yhq:O (2.4) BS01 rna ? GO:0003723 ... P12733 15851032
    65950 1yhq:P (2.4) BS01 rna ? GO:0003723 ... P14119 15851032
    65951 1yhq:Q (2.4) BS01 rna ? GO:0003735 ... P12734 15851032
    65952 1yhq:Q (2.4) BS02 rna ? GO:0003735 ... P12734 15851032
    65953 1yhq:R (2.4) BS01 rna ? GO:0002181 ... P10970 15851032
    65954 1yhq:S (2.4) BS01 rna ? GO:0003735 ... P12732 15851032
    65955 1yhq:T (2.4) BS01 rna ? GO:0003723 ... P10972 15851032
    65956 1yhq:T (2.4) BS02 MG ? GO:0003723 ... P10972 15851032
    65957 1yhq:U (2.4) BS01 rna ? GO:0003735 ... P14116 15851032
    65958 1yhq:V (2.4) BS01 rna ? GO:0003735 ... P10971 15851032
    65959 1yhq:W (2.4) BS01 rna ? GO:0000463 ... P14121 15851032
    65960 1yhq:W (2.4) BS02 rna ? GO:0000463 ... P14121 15851032
    65961 1yhq:X (2.4) BS01 rna ? GO:0002181 ... P18138 15851032
    65962 1yhq:Y (2.4) BS01 rna ? GO:0000166 ... P12736 15851032
    65963 1yhq:Y (2.4) BS02 MG ? GO:0000166 ... P12736 15851032
    65964 1yhq:Z (2.4) BS01 rna ? GO:0003735 ... P60619 15851032
    65965 1yhr:A (2.6) BS01 HEM ? GO:0004601 ... P69905 15835899
    65966 1yhr:B (2.6) BS01 OXY ? GO:0004601 ... P68871 15835899
    65967 1yhr:B (2.6) BS02 HEM ? GO:0004601 ... P68871 15835899
    65968 1yhr:C (2.6) BS01 HEM ? GO:0004601 ... P69905 15835899
    65969 1yhr:D (2.6) BS01 OXY ? GO:0004601 ... P68871 15835899
    65970 1yhr:D (2.6) BS02 HEM ? GO:0004601 ... P68871 15835899
    65971 1yhs:A (2.15) BS01 STU 2.7.11.1 GO:0004672 ... P11309 15657054 MOAD: ic50=0.01uM
    65972 1yht:A (2.0) BS01 GOL 3.2.1.52 GO:0004553 ... Q840G9 15878175
    65973 1yht:A (2.0) BS02 GOL 3.2.1.52 GO:0004553 ... Q840G9 15878175
    65974 1yhu:A (3.15) BS01 HEM ? GO:0005506 ... Q8IFK4 15710902
    65975 1yhu:A (3.15) BS02 OXY ? GO:0005506 ... Q8IFK4 15710902
    65976 1yhu:B (3.15) BS01 ZN ? GO:0005506 ... P80592 15710902
    65977 1yhu:B (3.15) BS02 ZN ? GO:0005506 ... P80592 15710902
    65978 1yhu:B (3.15) BS03 HEM ? GO:0005506 ... P80592 15710902
    65979 1yhu:B (3.15) BS04 OXY ? GO:0005506 ... P80592 15710902
    65980 1yhu:C (3.15) BS01 HEM ? GO:0005506 ... Q8IFK2 15710902
    65981 1yhu:C (3.15) BS02 OXY ? GO:0005506 ... Q8IFK2 15710902
    65982 1yhu:D (3.15) BS01 HEM ? GO:0005506 ... Q8IFJ9 15710902
    65983 1yhu:E (3.15) BS01 HEM ? GO:0005506 ... Q8IFK4 15710902
    65984 1yhu:E (3.15) BS02 OXY ? GO:0005506 ... Q8IFK4 15710902
    65985 1yhu:F (3.15) BS01 ZN ? GO:0005506 ... P80592 15710902
    65986 1yhu:F (3.15) BS02 ZN ? GO:0005506 ... P80592 15710902
    65987 1yhu:F (3.15) BS03 HEM ? GO:0005506 ... P80592 15710902
    65988 1yhu:F (3.15) BS04 OXY ? GO:0005506 ... P80592 15710902
    65989 1yhu:G (3.15) BS01 HEM ? GO:0005506 ... Q8IFK2 15710902
    65990 1yhu:G (3.15) BS02 OXY ? GO:0005506 ... Q8IFK2 15710902
    65991 1yhu:H (3.15) BS01 HEM ? GO:0005506 ... Q8IFJ9 15710902
    65992 1yhu:I (3.15) BS01 HEM ? GO:0005506 ... Q8IFK4 15710902
    65993 1yhu:J (3.15) BS01 ZN ? GO:0005506 ... P80592 15710902
    65994 1yhu:J (3.15) BS02 ZN ? GO:0005506 ... P80592 15710902
    65995 1yhu:J (3.15) BS03 HEM ? GO:0005506 ... P80592 15710902
    65996 1yhu:J (3.15) BS04 OXY ? GO:0005506 ... P80592 15710902
    65997 1yhu:K (3.15) BS01 HEM ? GO:0005506 ... Q8IFK2 15710902
    65998 1yhu:K (3.15) BS02 OXY ? GO:0005506 ... Q8IFK2 15710902
    65999 1yhu:L (3.15) BS01 HEM ? GO:0005506 ... Q8IFJ9 15710902
    66000 1yhu:M (3.15) BS01 HEM ? GO:0005506 ... Q8IFK4 15710902

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).