SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    66001 1yhu:M (3.15) BS02 OXY ? GO:0005506 ... Q8IFK4 15710902
    66002 1yhu:N (3.15) BS01 ZN ? GO:0005506 ... P80592 15710902
    66003 1yhu:N (3.15) BS02 ZN ? GO:0005506 ... P80592 15710902
    66004 1yhu:N (3.15) BS03 HEM ? GO:0005506 ... P80592 15710902
    66005 1yhu:N (3.15) BS04 OXY ? GO:0005506 ... P80592 15710902
    66006 1yhu:O (3.15) BS01 HEM ? GO:0005506 ... Q8IFK2 15710902
    66007 1yhu:O (3.15) BS02 OXY ? GO:0005506 ... Q8IFK2 15710902
    66008 1yhu:P (3.15) BS01 HEM ? GO:0005506 ... Q8IFJ9 15710902
    66009 1yhu:Q (3.15) BS01 HEM ? GO:0005506 ... Q8IFK4 15710902
    66010 1yhu:Q (3.15) BS02 OXY ? GO:0005506 ... Q8IFK4 15710902
    66011 1yhu:R (3.15) BS01 ZN ? GO:0005506 ... P80592 15710902
    66012 1yhu:R (3.15) BS02 ZN ? GO:0005506 ... P80592 15710902
    66013 1yhu:R (3.15) BS03 HEM ? GO:0005506 ... P80592 15710902
    66014 1yhu:R (3.15) BS04 OXY ? GO:0005506 ... P80592 15710902
    66015 1yhu:S (3.15) BS01 HEM ? GO:0005506 ... Q8IFK2 15710902
    66016 1yhu:S (3.15) BS02 OXY ? GO:0005506 ... Q8IFK2 15710902
    66017 1yhu:T (3.15) BS01 HEM ? GO:0005506 ... Q8IFJ9 15710902
    66018 1yhu:U (3.15) BS01 HEM ? GO:0005506 ... Q8IFK4 15710902
    66019 1yhu:U (3.15) BS02 OXY ? GO:0005506 ... Q8IFK4 15710902
    66020 1yhu:V (3.15) BS01 ZN ? GO:0005506 ... P80592 15710902
    66021 1yhu:V (3.15) BS02 ZN ? GO:0005506 ... P80592 15710902
    66022 1yhu:V (3.15) BS03 HEM ? GO:0005506 ... P80592 15710902
    66023 1yhu:V (3.15) BS04 OXY ? GO:0005506 ... P80592 15710902
    66024 1yhu:W (3.15) BS01 HEM ? GO:0005506 ... Q8IFK2 15710902
    66025 1yhu:W (3.15) BS02 OXY ? GO:0005506 ... Q8IFK2 15710902
    66026 1yhu:X (3.15) BS01 HEM ? GO:0005506 ... Q8IFJ9 15710902
    66027 1yhy:A (2.7) BS01 MG 2.2.1.6 GO:0000287 ... P17597 16407096
    66028 1yhy:A (2.7) BS02 1MM 2.2.1.6 GO:0000287 ... P17597 16407096
    66029 1yhy:A (2.7) BS03 FAD 2.2.1.6 GO:0000287 ... P17597 16407096
    66030 1yhz:A (2.7) BS01 MG 2.2.1.6 GO:0000287 ... P17597 16407096
    66031 1yhz:A (2.7) BS02 1CS 2.2.1.6 GO:0000287 ... P17597 16407096
    66032 1yhz:A (2.7) BS03 FAD 2.2.1.6 GO:0000287 ... P17597 16407096
    66033 1yi0:A (2.7) BS01 MG 2.2.1.6 GO:0000287 ... P17597 16407096
    66034 1yi0:A (2.7) BS02 1SM 2.2.1.6 GO:0000287 ... P17597 16407096
    66035 1yi0:A (2.7) BS03 FAD 2.2.1.6 GO:0000287 ... P17597 16407096
    66036 1yi1:A (2.9) BS01 MG 2.2.1.6 GO:0000287 ... P17597 16407096
    66037 1yi1:A (2.9) BS02 1TB 2.2.1.6 GO:0000287 ... P17597 16407096 BindingDB: Ki=253nM
    66038 1yi1:A (2.9) BS03 FAD 2.2.1.6 GO:0000287 ... P17597 16407096
    66039 1yi2:1 (2.65) BS01 rna ? GO:0003723 ... P32410 15851032
    66040 1yi2:2 (2.65) BS01 rna ? GO:0003735 ... P22452 15851032
    66041 1yi2:3 (2.65) BS01 rna ? GO:0003735 ... P32411 15851032
    66042 1yi2:3 (2.65) BS02 MG ? GO:0003735 ... P32411 15851032
    66043 1yi2:A (2.65) BS01 rna ? GO:0002181 ... P20276 15851032
    66044 1yi2:A (2.65) BS02 MG ? GO:0002181 ... P20276 15851032
    66045 1yi2:B (2.65) BS01 rna ? GO:0003723 ... P20279 15851032
    66046 1yi2:C (2.65) BS01 rna ? GO:0003735 ... P12735 15851032
    66047 1yi2:D (2.65) BS01 rna ? GO:0000049 ... P14124 15851032
    66048 1yi2:D (2.65) BS02 rna ? GO:0000049 ... P14124 15851032
    66049 1yi2:E (2.65) BS01 rna ? GO:0002181 ... P14135 15851032
    66050 1yi2:F (2.65) BS01 rna ? GO:0001682 ... P12743 15851032
    66051 1yi2:H (2.65) BS01 rna ? GO:0003735 ... P60617 15851032
    66052 1yi2:I (2.65) BS01 rna ? GO:0003735 ... P14122 15851032
    66053 1yi2:J (2.65) BS01 rna ? GO:0003729 ... P29198 15851032
    66054 1yi2:K (2.65) BS01 rna ? GO:0003735 ... P22450 15851032
    66055 1yi2:L (2.65) BS01 rna ? GO:0003735 ... P12737 15851032
    66056 1yi2:M (2.65) BS01 rna ? GO:0002181 ... P60618 15851032
    66057 1yi2:N (2.65) BS01 rna ? GO:0000027 ... P14123 15851032
    66058 1yi2:N (2.65) BS02 rna ? GO:0000027 ... P14123 15851032
    66059 1yi2:O (2.65) BS01 rna ? GO:0003723 ... P12733 15851032
    66060 1yi2:P (2.65) BS01 rna ? GO:0003723 ... P14119 15851032
    66061 1yi2:Q (2.65) BS01 rna ? GO:0003735 ... P12734 15851032
    66062 1yi2:Q (2.65) BS02 rna ? GO:0003735 ... P12734 15851032
    66063 1yi2:R (2.65) BS01 rna ? GO:0002181 ... P10970 15851032
    66064 1yi2:S (2.65) BS01 rna ? GO:0003735 ... P12732 15851032
    66065 1yi2:T (2.65) BS01 rna ? GO:0003723 ... P10972 15851032
    66066 1yi2:T (2.65) BS02 MG ? GO:0003723 ... P10972 15851032
    66067 1yi2:U (2.65) BS01 rna ? GO:0003735 ... P14116 15851032
    66068 1yi2:V (2.65) BS01 rna ? GO:0003735 ... P10971 15851032
    66069 1yi2:W (2.65) BS01 rna ? GO:0000463 ... P14121 15851032
    66070 1yi2:W (2.65) BS02 rna ? GO:0000463 ... P14121 15851032
    66071 1yi2:X (2.65) BS01 rna ? GO:0002181 ... P18138 15851032
    66072 1yi2:Y (2.65) BS01 rna ? GO:0000166 ... P12736 15851032
    66073 1yi2:Y (2.65) BS02 MG ? GO:0000166 ... P12736 15851032
    66074 1yi2:Z (2.65) BS01 rna ? GO:0003735 ... P60619 15851032
    66075 1yi3:A (2.5) BS01 LY2 2.7.11.1 GO:0004672 ... P11309 15657054 MOAD: ic50=4uM
    BindingDB: IC50=820nM
    66076 1yi4:A (2.4) BS01 ADN 2.7.11.1 GO:0004672 ... P11309 15657054
    66077 1yi7:A (1.9) BS01 CA 3.2.1.37 GO:0004553 ... Q97DM1 N/A
    66078 1yi7:B (1.9) BS01 CA 3.2.1.37 GO:0004553 ... Q97DM1 N/A
    66079 1yi7:C (1.9) BS01 CA 3.2.1.37 GO:0004553 ... Q97DM1 N/A
    66080 1yi7:D (1.9) BS01 CA 3.2.1.37 GO:0004553 ... Q97DM1 N/A
    66081 1yi8:C (2.1) BS01 TRP 6.1.1.2 GO:0000166 ... Q9RVD6 15723076
    66082 1yi9:A (1.7) BS01 CU 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 16100265
    66083 1yi9:A (1.7) BS02 CU 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 16100265
    66084 1yia:B (3.7) BS01 HRP 6.1.1.2 GO:0000166 ... Q9RVD6 15723076
    66085 1yic:A (-1.00) BS01 HEC ? GO:0005515 ... P00044 9220987
    66086 1yid:B (2.4) BS01 ATP 6.1.1.2 GO:0000166 ... Q9RVD6 15998643 MOAD: Kd=10uM
    66087 1yie:A (2.4) BS01 HEM ? GO:0004601 ... P69905 15835899
    66088 1yie:B (2.4) BS01 HEM ? GO:0004601 ... P68871 15835899
    66089 1yie:B (2.4) BS02 OXY ? GO:0004601 ... P68871 15835899
    66090 1yie:C (2.4) BS01 HEM ? GO:0004601 ... P69905 15835899
    66091 1yie:C (2.4) BS02 OXY ? GO:0004601 ... P69905 15835899
    66092 1yie:D (2.4) BS01 HEM ? GO:0004601 ... P68871 15835899
    66093 1yie:D (2.4) BS02 OXY ? GO:0004601 ... P68871 15835899
    66094 1yih:A (2.0) BS01 HEM ? GO:0004601 ... P69905 15835899
    66095 1yih:B (2.0) BS01 HEM ? GO:0004601 ... P68871 15835899
    66096 1yih:B (2.0) BS02 OXY ? GO:0004601 ... P68871 15835899
    66097 1yih:C (2.0) BS01 HEM ? GO:0004601 ... P69905 15835899
    66098 1yih:D (2.0) BS01 HEM ? GO:0004601 ... P68871 15835899
    66099 1yih:D (2.0) BS02 OXY ? GO:0004601 ... P68871 15835899
    66100 1yii:A (1.42) BS01 CA ? GO:0001786 ... P17153 N/A
    66101 1yii:A (1.42) BS02 CA ? GO:0001786 ... P17153 N/A
    66102 1yii:A (1.42) BS03 CA ? GO:0001786 ... P17153 N/A
    66103 1yij:1 (2.6) BS01 rna ? GO:0003723 ... P32410 15851032
    66104 1yij:2 (2.6) BS01 rna ? GO:0003735 ... P22452 15851032
    66105 1yij:3 (2.6) BS01 rna ? GO:0003735 ... P32411 15851032
    66106 1yij:3 (2.6) BS02 MG ? GO:0003735 ... P32411 15851032
    66107 1yij:A (2.6) BS01 rna ? GO:0002181 ... P20276 15851032
    66108 1yij:A (2.6) BS02 MG ? GO:0002181 ... P20276 15851032
    66109 1yij:B (2.6) BS01 rna ? GO:0003723 ... P20279 15851032
    66110 1yij:C (2.6) BS01 rna ? GO:0003735 ... P12735 15851032
    66111 1yij:D (2.6) BS01 rna ? GO:0000049 ... P14124 15851032
    66112 1yij:D (2.6) BS02 rna ? GO:0000049 ... P14124 15851032
    66113 1yij:E (2.6) BS01 rna ? GO:0002181 ... P14135 15851032
    66114 1yij:F (2.6) BS01 rna ? GO:0001682 ... P12743 15851032
    66115 1yij:H (2.6) BS01 rna ? GO:0003735 ... P60617 15851032
    66116 1yij:I (2.6) BS01 rna ? GO:0003735 ... P14122 15851032
    66117 1yij:J (2.6) BS01 rna ? GO:0003729 ... P29198 15851032
    66118 1yij:K (2.6) BS01 rna ? GO:0003735 ... P22450 15851032
    66119 1yij:L (2.6) BS01 rna ? GO:0003735 ... P12737 15851032
    66120 1yij:M (2.6) BS01 rna ? GO:0002181 ... P60618 15851032
    66121 1yij:N (2.6) BS01 rna ? GO:0000027 ... P14123 15851032
    66122 1yij:N (2.6) BS02 rna ? GO:0000027 ... P14123 15851032
    66123 1yij:O (2.6) BS01 rna ? GO:0003723 ... P12733 15851032
    66124 1yij:P (2.6) BS01 rna ? GO:0003723 ... P14119 15851032
    66125 1yij:Q (2.6) BS01 rna ? GO:0003735 ... P12734 15851032
    66126 1yij:Q (2.6) BS02 rna ? GO:0003735 ... P12734 15851032
    66127 1yij:R (2.6) BS01 rna ? GO:0002181 ... P10970 15851032
    66128 1yij:S (2.6) BS01 rna ? GO:0003735 ... P12732 15851032
    66129 1yij:T (2.6) BS01 rna ? GO:0003723 ... P10972 15851032
    66130 1yij:T (2.6) BS02 MG ? GO:0003723 ... P10972 15851032
    66131 1yij:U (2.6) BS01 rna ? GO:0003735 ... P14116 15851032
    66132 1yij:V (2.6) BS01 rna ? GO:0003735 ... P10971 15851032
    66133 1yij:W (2.6) BS01 rna ? GO:0000463 ... P14121 15851032
    66134 1yij:W (2.6) BS02 rna ? GO:0000463 ... P14121 15851032
    66135 1yij:X (2.6) BS01 rna ? GO:0002181 ... P18138 15851032
    66136 1yij:Y (2.6) BS01 rna ? GO:0000166 ... P12736 15851032
    66137 1yij:Y (2.6) BS02 MG ? GO:0000166 ... P12736 15851032
    66138 1yij:Z (2.6) BS01 rna ? GO:0003735 ... P60619 15851032
    66139 1yik:A (1.75) BS01 MM1 3.2.1.17 GO:0003796 ... P00698 15701702
    66140 1yik:A (1.75) BS02 MM1 3.2.1.17 GO:0003796 ... P00698 15701702
    66141 1yil:A (1.6) BS01 MM2 3.2.1.17 GO:0003796 ... P00698 15701702
    66142 1yil:A (1.6) BS02 MM2 3.2.1.17 GO:0003796 ... P00698 15701702
    66143 1yim:A (1.9) BS01 CM4 ? N/A P03372 15745820 MOAD: ic50=1.5nM
    BindingDB: IC50=1.5nM
    66144 1yin:A (2.2) BS01 CM3 ? N/A P03372 15745820 MOAD: ic50=1.4nM
    BindingDB: IC50=0.8nM
    66145 1yio:A (2.2) BS01 MG ? GO:0000160 ... O30989 16154086
    66146 1yip:A (2.2) BS01 CU 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 16100265
    66147 1yip:A (2.2) BS02 CU 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 16100265
    66148 1yiq:A (2.2) BS01 CA 1.1.9.1 GO:0005509 ... Q4W6G0 16061256
    66149 1yiq:A (2.2) BS02 PQQ 1.1.9.1 GO:0005509 ... Q4W6G0 16061256
    66150 1yiq:A (2.2) BS03 HEC 1.1.9.1 GO:0005509 ... Q4W6G0 16061256
    66151 1yit:1 (2.8) BS01 rna ? GO:0003723 ... P32410 15851032
    66152 1yit:2 (2.8) BS01 rna ? GO:0003735 ... P22452 15851032
    66153 1yit:3 (2.8) BS01 rna ? GO:0003735 ... P32411 15851032
    66154 1yit:3 (2.8) BS02 MG ? GO:0003735 ... P32411 15851032
    66155 1yit:A (2.8) BS01 rna ? GO:0002181 ... P20276 15851032
    66156 1yit:B (2.8) BS01 rna ? GO:0003723 ... P20279 15851032
    66157 1yit:C (2.8) BS01 rna ? GO:0003735 ... P12735 15851032
    66158 1yit:D (2.8) BS01 rna ? GO:0000049 ... P14124 15851032
    66159 1yit:D (2.8) BS02 rna ? GO:0000049 ... P14124 15851032
    66160 1yit:E (2.8) BS01 rna ? GO:0002181 ... P14135 15851032
    66161 1yit:F (2.8) BS01 rna ? GO:0001682 ... P12743 15851032
    66162 1yit:H (2.8) BS01 rna ? GO:0003735 ... P60617 15851032
    66163 1yit:I (2.8) BS01 rna ? GO:0003735 ... P14122 15851032
    66164 1yit:J (2.8) BS01 rna ? GO:0003729 ... P29198 15851032
    66165 1yit:K (2.8) BS01 rna ? GO:0003735 ... P22450 15851032
    66166 1yit:L (2.8) BS01 rna ? GO:0003735 ... P12737 15851032
    66167 1yit:M (2.8) BS01 rna ? GO:0002181 ... P60618 15851032
    66168 1yit:N (2.8) BS01 rna ? GO:0000027 ... P14123 15851032
    66169 1yit:N (2.8) BS02 rna ? GO:0000027 ... P14123 15851032
    66170 1yit:O (2.8) BS01 rna ? GO:0003723 ... P12733 15851032
    66171 1yit:P (2.8) BS01 rna ? GO:0003723 ... P14119 15851032
    66172 1yit:Q (2.8) BS01 rna ? GO:0003735 ... P12734 15851032
    66173 1yit:Q (2.8) BS02 rna ? GO:0003735 ... P12734 15851032
    66174 1yit:R (2.8) BS01 rna ? GO:0002181 ... P10970 15851032
    66175 1yit:S (2.8) BS01 rna ? GO:0003735 ... P12732 15851032
    66176 1yit:T (2.8) BS01 rna ? GO:0003723 ... P10972 15851032
    66177 1yit:T (2.8) BS02 MG ? GO:0003723 ... P10972 15851032
    66178 1yit:U (2.8) BS01 rna ? GO:0003735 ... P14116 15851032
    66179 1yit:V (2.8) BS01 rna ? GO:0003735 ... P10971 15851032
    66180 1yit:W (2.8) BS01 rna ? GO:0000463 ... P14121 15851032
    66181 1yit:W (2.8) BS02 rna ? GO:0000463 ... P14121 15851032
    66182 1yit:X (2.8) BS01 rna ? GO:0002181 ... P18138 15851032
    66183 1yit:Y (2.8) BS01 rna ? GO:0000166 ... P12736 15851032
    66184 1yit:Y (2.8) BS02 MG ? GO:0000166 ... P12736 15851032
    66185 1yit:Z (2.8) BS01 rna ? GO:0003735 ... P60619 15851032
    66186 1yiv:A (2.1) BS01 EPE ? GO:0005504 ... P0C6G6 16041071
    66187 1yix:A (1.9) BS01 ZN 3.1.-.- GO:0004536 ... P0AFQ7 N/A
    66188 1yix:A (1.9) BS02 ZN 3.1.-.- GO:0004536 ... P0AFQ7 N/A
    66189 1yix:B (1.9) BS01 ZN 3.1.-.- GO:0004536 ... P0AFQ7 N/A
    66190 1yix:B (1.9) BS02 ZN 3.1.-.- GO:0004536 ... P0AFQ7 N/A
    66191 1yiy:A (1.9) BS01 PMP 2.6.1.-
    2.6.1.63
    2.6.1.7
    GO:0005737 ... Q17CS8 15853804
    66192 1yiy:B (1.9) BS01 PMP 2.6.1.-
    2.6.1.63
    2.6.1.7
    GO:0005737 ... Q17CS8 15853804
    66193 1yj0:A (2.95) BS01 ZN ? GO:0001786 ... P17153 N/A
    66194 1yj3:A (1.6) BS01 CO 3.4.11.18 GO:0004239 ... P9WK19 15882055
    66195 1yj3:A (1.6) BS02 CO 3.4.11.18 GO:0004239 ... P9WK19 15882055
    66196 1yj3:A (1.6) BS03 MET 3.4.11.18 GO:0004239 ... P9WK19 15882055
    66197 1yj6:A (2.5) BS01 GSH 2.5.1.18 GO:0004364 ... P09488 N/A
    66198 1yj6:B (2.5) BS01 GSH 2.5.1.18 GO:0004364 ... P09488 N/A
    66199 1yj6:C (2.5) BS01 GSH 2.5.1.18 GO:0004364 ... P09488 N/A
    66200 1yj9:1 (2.8) BS01 rna ? GO:0003723 ... P32410 15851032

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).