SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    67201 1ywh:E (2.7) BS03 FUC ? GO:0001934 ... Q03405 15861141
    67202 1ywh:G (2.7) BS01 peptide ? GO:0001934 ... Q03405 15861141
    67203 1ywh:G (2.7) BS02 peptide ? GO:0001934 ... Q03405 15861141
    67204 1ywh:G (2.7) BS03 FUC ? GO:0001934 ... Q03405 15861141
    67205 1ywh:I (2.7) BS01 peptide ? GO:0001934 ... Q03405 15861141
    67206 1ywh:I (2.7) BS02 peptide ? GO:0001934 ... Q03405 15861141
    67207 1ywh:I (2.7) BS03 FUC ? GO:0001934 ... Q03405 15861141
    67208 1ywh:K (2.7) BS01 peptide ? GO:0001934 ... Q03405 15861141
    67209 1ywh:K (2.7) BS02 peptide ? GO:0001934 ... Q03405 15861141
    67210 1ywh:K (2.7) BS03 FUC ? GO:0001934 ... Q03405 15861141
    67211 1ywh:M (2.7) BS01 peptide ? GO:0001934 ... Q03405 15861141
    67212 1ywh:M (2.7) BS02 peptide ? GO:0001934 ... Q03405 15861141
    67213 1ywh:O (2.7) BS01 peptide ? GO:0001934 ... Q03405 15861141
    67214 1ywh:O (2.7) BS02 peptide ? GO:0001934 ... Q03405 15861141
    67215 1ywh:O (2.7) BS03 FUC ? GO:0001934 ... Q03405 15861141
    67216 1ywn:A (1.71) BS01 LIF 2.7.10.1 GO:0004672 ... P35968 15837294 MOAD: ic50~0.003uM
    BindingDB: IC50=3nM
    67217 1ywo:A (1.81) BS01 peptide 3.1.4.11 N/A P10686 16061254
    67218 1ywq:A (2.3) BS01 FMN ? GO:0005737 ... Q81EW9 N/A
    67219 1ywr:A (1.95) BS01 LI9 2.7.11.24 GO:0000077 ... P47811 15837310 MOAD: ic50=32nM
    67220 1yws:A (-1.00) BS01 ZN ? GO:0002098 ... Q3E840 N/A
    67221 1ywt:A (2.4) BS01 peptide ? GO:0001836 ... P31947 15731107
    67222 1ywt:B (2.4) BS01 peptide ? GO:0001836 ... P31947 15731107
    67223 1ywt:B (2.4) BS02 CA ? GO:0001836 ... P31947 15731107
    67224 1yxd:A (2.0) BS01 LYS 4.3.3.7 GO:0005737 ... P0A6L2 16041077
    67225 1yxd:A (2.0) BS02 LYS 4.3.3.7 GO:0005737 ... P0A6L2 16041077
    67226 1yxd:B (2.0) BS01 LYS 4.3.3.7 GO:0005737 ... P0A6L2 16041077 MOAD: Ki~22uM
    67227 1yxd:B (2.0) BS02 LYS 4.3.3.7 GO:0005737 ... P0A6L2 16041077 MOAD: Ki~22uM
    67228 1yxh:A (1.86) BS01 CA 3.1.1.4 GO:0004623 ... Q6T179 16269164
    67229 1yxi:A (2.0) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 15767255
    67230 1yxi:A (2.0) BS02 MG 3.1.3.11 GO:0000122 ... P00636 15767255
    67231 1yxi:A (2.0) BS03 MG 3.1.3.11 GO:0000122 ... P00636 15767255
    67232 1yxi:A (2.0) BS04 MG 3.1.3.11 GO:0000122 ... P00636 15767255
    67233 1yxl:A (1.477) BS01 CA 3.1.1.4 GO:0004623 ... P60045 N/A
    67234 1yxm:B (1.9) BS01 ADE 1.3.1.38 GO:0005102 ... Q9BY49 N/A
    67235 1yxq:A (2.01) BS01 ATP 3.6.4.- GO:0000287 ... P68135 15797212
    67236 1yxq:A (2.01) BS02 SWI 3.6.4.- GO:0000287 ... P68135 15797212
    67237 1yxq:B (2.01) BS01 ATP 3.6.4.- GO:0000287 ... P68135 15797212
    67238 1yxq:B (2.01) BS02 SWI 3.6.4.- GO:0000287 ... P68135 15797212
    67239 1yxt:A (2.0) BS01 ANP 2.7.11.1 GO:0004672 ... P11309 15808862
    67240 1yxu:A (2.24) BS01 AMP 2.7.11.1 GO:0004672 ... P11309 15808862
    67241 1yxu:B (2.24) BS01 AMP 2.7.11.1 GO:0004672 ... P11309 15808862
    67242 1yxu:C (2.24) BS01 AMP 2.7.11.1 GO:0004672 ... P11309 15808862
    67243 1yxu:D (2.24) BS01 AMP 2.7.11.1 GO:0004672 ... P11309 15808862
    67244 1yxv:A (2.0) BS01 LI6 2.7.11.1 GO:0004672 ... P11309 15808862
    67245 1yxw:A (2.2) BS01 GLU 3.4.24.68 GO:0005576 ... P04958 16104015
    67246 1yxw:A (2.2) BS02 TRP 3.4.24.68 GO:0005576 ... P04958 16104015
    67247 1yxx:A (2.0) BS01 LI7 2.7.11.1 GO:0004672 ... P11309 15808862
    67248 1yy4:A (2.7) BS01 peptide ? N/A Q92731 15943471
    67249 1yy4:A (2.7) BS02 4NA ? N/A Q92731 15943471 BindingDB: IC50=2.52nM
    67250 1yy4:B (2.7) BS01 peptide ? N/A Q92731 15943471
    67251 1yy4:B (2.7) BS02 4NA ? N/A Q92731 15943471 BindingDB: IC50=2.52nM
    67252 1yy5:A (2.3) BS01 FAD 1.5.3.17 GO:0005737 ... P50264 15843025
    67253 1yy5:B (2.3) BS01 FAD 1.5.3.17 GO:0005737 ... P50264 15843025
    67254 1yy6:A (1.7) BS01 peptide 3.4.19.12 N/A Q93009 15808506
    67255 1yyd:A (1.45) BS01 MAN 1.11.1.13 GO:0000302 ... Q02567 15850380
    67256 1yyd:A (1.45) BS02 CA 1.11.1.13 GO:0000302 ... Q02567 15850380
    67257 1yyd:A (1.45) BS03 CA 1.11.1.13 GO:0000302 ... Q02567 15850380
    67258 1yyd:A (1.45) BS04 MN 1.11.1.13 GO:0000302 ... Q02567 15850380
    67259 1yyd:A (1.45) BS05 HEM 1.11.1.13 GO:0000302 ... Q02567 15850380
    67260 1yye:A (2.03) BS01 peptide ? N/A Q92731 15943471
    67261 1yye:A (2.03) BS02 196 ? N/A Q92731 15943471 MOAD: ic50=2.7nM
    BindingDB: IC50=2.7nM
    67262 1yye:B (2.03) BS01 peptide ? N/A Q92731 15943471
    67263 1yye:B (2.03) BS02 196 ? N/A Q92731 15943471 MOAD: ic50=2.7nM
    BindingDB: IC50=2.7nM
    67264 1yyf:A (4.16) BS01 ADP ? GO:0000287 ... P0A6H5 15983416
    67265 1yyf:B (4.16) BS01 ADP ? GO:0000287 ... P0A6H5 15983416
    67266 1yyg:A (1.6) BS01 MAN 1.11.1.13 GO:0000302 ... Q02567 15850380
    67267 1yyg:A (1.6) BS02 CA 1.11.1.13 GO:0000302 ... Q02567 15850380
    67268 1yyg:A (1.6) BS03 CA 1.11.1.13 GO:0000302 ... Q02567 15850380
    67269 1yyg:A (1.6) BS04 CA 1.11.1.13 GO:0000302 ... Q02567 15850380
    67270 1yyg:A (1.6) BS05 HEM 1.11.1.13 GO:0000302 ... Q02567 15850380
    67271 1yyk:A (2.5) BS01 rna 3.1.26.3 GO:0003723 ... O67082 16216575
    67272 1yyk:A (2.5) BS02 rna 3.1.26.3 GO:0003723 ... O67082 16216575
    67273 1yyk:A (2.5) BS03 rna 3.1.26.3 GO:0003723 ... O67082 16216575
    67274 1yyk:A (2.5) BS04 rna 3.1.26.3 GO:0003723 ... O67082 16216575
    67275 1yyl:G (2.75) BS01 peptide ? GO:0019031 ... P35961 15893666
    67276 1yyl:P (2.75) BS01 peptide ? GO:0019031 ... P35961 15893666
    67277 1yym:G (2.2) BS01 peptide ? GO:0019031 ... P35961 15893666
    67278 1yym:P (2.2) BS01 peptide ? GO:0019031 ... P35961 15893666
    67279 1yyn:A (2.3) BS01 SIA 3.4.24.68 GO:0005576 ... P04958 16104015
    67280 1yyn:A (2.3) BS02 SIA 3.4.24.68 GO:0005576 ... P04958 16104015
    67281 1yyo:A (2.9) BS01 rna 3.1.26.3 GO:0003723 ... O67082 16216575
    67282 1yyo:A (2.9) BS02 rna 3.1.26.3 GO:0003723 ... O67082 16216575
    67283 1yyo:A (2.9) BS03 rna 3.1.26.3 GO:0003723 ... O67082 16216575
    67284 1yyo:A (2.9) BS04 rna 3.1.26.3 GO:0003723 ... O67082 16216575
    67285 1yyp:A (2.5) BS01 peptide ? GO:0019079 ... P16790 16371349
    67286 1yyq:B (2.1) BS01 MG 4.2.3.6 GO:0016106 ... P13513 15835903
    67287 1yyq:B (2.1) BS02 POP 4.2.3.6 GO:0016106 ... P13513 15835903
    67288 1yyr:A (2.5) BS01 SAZ 4.2.3.6 GO:0016106 ... P13513 15835903
    67289 1yyr:B (2.5) BS01 MG 4.2.3.6 GO:0016106 ... P13513 15835903
    67290 1yyr:B (2.5) BS02 SAZ 4.2.3.6 GO:0016106 ... P13513 15835903
    67291 1yyr:B (2.5) BS03 POP 4.2.3.6 GO:0016106 ... P13513 15835903
    67292 1yys:A (2.75) BS01 SAZ 4.2.3.6 GO:0016106 ... P13513 15835903
    67293 1yys:B (2.75) BS01 MG 4.2.3.6 GO:0016106 ... P13513 15835903
    67294 1yys:B (2.75) BS02 MG 4.2.3.6 GO:0016106 ... P13513 15835903
    67295 1yys:B (2.75) BS03 POP 4.2.3.6 GO:0016106 ... P13513 15835903
    67296 1yyt:A (2.9) BS01 SAZ 4.2.3.6 GO:0016106 ... P13513 15835903
    67297 1yyt:B (2.9) BS01 POP 4.2.3.6 GO:0016106 ... P13513 15835903
    67298 1yyt:B (2.9) BS02 SAZ 4.2.3.6 GO:0016106 ... P13513 15835903
    67299 1yyu:A (2.95) BS01 MG 4.2.3.6 GO:0016106 ... P13513 15835903
    67300 1yyu:A (2.95) BS02 RAZ 4.2.3.6 GO:0016106 ... P13513 15835903
    67301 1yyu:A (2.95) BS03 POP 4.2.3.6 GO:0016106 ... P13513 15835903
    67302 1yyu:B (2.95) BS01 MG 4.2.3.6 GO:0016106 ... P13513 15835903
    67303 1yyu:B (2.95) BS02 SAZ 4.2.3.6 GO:0016106 ... P13513 15835903
    67304 1yyu:B (2.95) BS03 POP 4.2.3.6 GO:0016106 ... P13513 15835903
    67305 1yyw:A (2.8) BS01 rna 3.1.26.3 GO:0003723 ... O67082 16216575
    67306 1yyw:A (2.8) BS02 rna 3.1.26.3 GO:0003723 ... O67082 16216575
    67307 1yyw:A (2.8) BS03 rna 3.1.26.3 GO:0003723 ... O67082 16216575
    67308 1yyw:C (2.8) BS01 rna 3.1.26.3 GO:0003723 ... O67082 16216575
    67309 1yyw:C (2.8) BS02 rna 3.1.26.3 GO:0003723 ... O67082 16216575
    67310 1yyw:C (2.8) BS03 rna 3.1.26.3 GO:0003723 ... O67082 16216575
    67311 1yyy:1 (2.1) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9724521
    67312 1yyy:1 (2.1) BS02 0KV 3.4.21.4 GO:0004175 ... P00760 9724521
    67313 1yyz:A (1.85) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 15767255
    67314 1yyz:A (1.85) BS02 MG 3.1.3.11 GO:0000122 ... P00636 15767255
    67315 1yyz:A (1.85) BS03 MG 3.1.3.11 GO:0000122 ... P00636 15767255
    67316 1yyz:A (1.85) BS04 AMP 3.1.3.11 GO:0000122 ... P00636 15767255 MOAD: Kd=2.4uM
    BindingDB: IC50=1300nM
    67317 1yz0:A (2.07) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 15767255
    67318 1yz0:A (2.07) BS02 MG 3.1.3.11 GO:0000122 ... P00636 15767255
    67319 1yz0:A (2.07) BS03 AMP 3.1.3.11 GO:0000122 ... P00636 15767255 MOAD: Kd=2.4uM
    BindingDB: IC50=1300nM
    67320 1yz0:B (2.07) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 15767255
    67321 1yz0:B (2.07) BS02 MG 3.1.3.11 GO:0000122 ... P00636 15767255
    67322 1yz0:B (2.07) BS03 AMP 3.1.3.11 GO:0000122 ... P00636 15767255 MOAD: Kd=2.4uM
    BindingDB: IC50=1300nM
    67323 1yz3:A (2.4) BS01 SKA 2.1.1.28 GO:0004603 ... P11086 16279783 MOAD: Ki=1.55nM
    BindingDB: Ki=3.1nM, IC50=10nM
    67324 1yz3:A (2.4) BS02 SAH 2.1.1.28 GO:0004603 ... P11086 16279783
    67325 1yz3:B (2.4) BS01 SKA 2.1.1.28 GO:0004603 ... P11086 16279783 MOAD: Ki=1.55nM
    BindingDB: Ki=3.1nM, IC50=10nM
    67326 1yz3:B (2.4) BS02 SAH 2.1.1.28 GO:0004603 ... P11086 16279783
    67327 1yz9:A (2.1) BS01 rna 3.1.26.3 GO:0003723 ... O67082 16216575
    67328 1yz9:A (2.1) BS02 rna 3.1.26.3 GO:0003723 ... O67082 16216575
    67329 1yz9:A (2.1) BS03 rna 3.1.26.3 GO:0003723 ... O67082 16216575
    67330 1yz9:A (2.1) BS04 rna 3.1.26.3 GO:0003723 ... O67082 16216575
    67331 1yzg:A (2.0) BS01 GDP ? GO:0003924 ... Q96KC2 N/A
    67332 1yzi:A (2.07) BS01 HEM ? GO:0004601 ... P69905 15938624
    67333 1yzi:B (2.07) BS01 HEM ? GO:0004601 ... P68871 15938624
    67334 1yzk:A (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P62491 16034420
    67335 1yzk:A (2.0) BS02 GNP 3.6.5.2 GO:0003924 ... P62491 16034420
    67336 1yzl:A (1.85) BS01 MG ? GO:0003924 ... Q9R0M6 16034420
    67337 1yzl:A (1.85) BS02 GNP ? GO:0003924 ... Q9R0M6 16034420
    67338 1yzn:A (2.06) BS01 MG ? GO:0003924 ... P01123 16034420
    67339 1yzn:A (2.06) BS02 GNP ? GO:0003924 ... P01123 16034420
    67340 1yzp:A (1.6) BS01 MAN 1.11.1.13 GO:0000302 ... Q02567 15850380
    67341 1yzp:A (1.6) BS02 CA 1.11.1.13 GO:0000302 ... Q02567 15850380
    67342 1yzp:A (1.6) BS03 CA 1.11.1.13 GO:0000302 ... Q02567 15850380
    67343 1yzp:A (1.6) BS04 HEM 1.11.1.13 GO:0000302 ... Q02567 15850380
    67344 1yzq:A (1.78) BS01 MG ? GO:0003924 ... P20340 16034420
    67345 1yzq:A (1.78) BS02 GNP ? GO:0003924 ... P20340 16034420
    67346 1yzr:A (1.6) BS01 MAN 1.11.1.13 GO:0000302 ... Q02567 15850380
    67347 1yzr:A (1.6) BS02 CA 1.11.1.13 GO:0000302 ... Q02567 15850380
    67348 1yzr:A (1.6) BS03 CA 1.11.1.13 GO:0000302 ... Q02567 15850380
    67349 1yzr:A (1.6) BS04 HEM 1.11.1.13 GO:0000302 ... Q02567 15850380
    67350 1yzt:A (2.05) BS01 MG ? GO:0003924 ... Q9UL25 16034420
    67351 1yzt:A (2.05) BS02 GNP ? GO:0003924 ... Q9UL25 16034420
    67352 1yzt:B (2.05) BS01 MG ? GO:0003924 ... Q9UL25 16034420
    67353 1yzt:B (2.05) BS02 GNP ? GO:0003924 ... Q9UL25 16034420
    67354 1yzu:A (2.5) BS01 MG ? GO:0003924 ... Q9UL25 16034420
    67355 1yzu:A (2.5) BS02 GNP ? GO:0003924 ... Q9UL25 16034420
    67356 1yzu:B (2.5) BS01 MG ? GO:0003924 ... Q9UL25 16034420
    67357 1yzu:B (2.5) BS02 GNP ? GO:0003924 ... Q9UL25 16034420
    67358 1yzx:A (1.93) BS01 GSF 2.5.1.18 GO:0001889 ... Q9Y2Q3 16081649
    67359 1yzx:B (1.93) BS01 GSF 2.5.1.18 GO:0001889 ... Q9Y2Q3 16081649
    67360 1z01:A (1.8) BS01 FE 1.14.13.61 GO:0003824 ... O05935 15893671
    67361 1z01:A (1.8) BS02 FES 1.14.13.61 GO:0003824 ... O05935 15893671
    67362 1z01:B (1.8) BS01 FE 1.14.13.61 GO:0003824 ... O05935 15893671
    67363 1z01:B (1.8) BS02 FES 1.14.13.61 GO:0003824 ... O05935 15893671
    67364 1z01:C (1.8) BS01 FE 1.14.13.61 GO:0003824 ... O05935 15893671
    67365 1z01:C (1.8) BS02 FES 1.14.13.61 GO:0003824 ... O05935 15893671
    67366 1z01:D (1.8) BS01 FE 1.14.13.61 GO:0003824 ... O05935 15893671
    67367 1z01:D (1.8) BS02 FES 1.14.13.61 GO:0003824 ... O05935 15893671
    67368 1z01:E (1.8) BS01 FE 1.14.13.61 GO:0003824 ... O05935 15893671
    67369 1z01:E (1.8) BS02 FES 1.14.13.61 GO:0003824 ... O05935 15893671
    67370 1z01:F (1.8) BS01 FE 1.14.13.61 GO:0003824 ... O05935 15893671
    67371 1z01:F (1.8) BS02 FES 1.14.13.61 GO:0003824 ... O05935 15893671
    67372 1z02:A (1.8) BS01 FE 1.14.13.61 GO:0003824 ... O05935 15893671
    67373 1z02:A (1.8) BS02 FES 1.14.13.61 GO:0003824 ... O05935 15893671
    67374 1z02:B (1.8) BS01 FE 1.14.13.61 GO:0003824 ... O05935 15893671
    67375 1z02:B (1.8) BS02 FES 1.14.13.61 GO:0003824 ... O05935 15893671
    67376 1z02:C (1.8) BS01 FE 1.14.13.61 GO:0003824 ... O05935 15893671
    67377 1z02:C (1.8) BS02 FES 1.14.13.61 GO:0003824 ... O05935 15893671
    67378 1z02:D (1.8) BS01 FE 1.14.13.61 GO:0003824 ... O05935 15893671
    67379 1z02:D (1.8) BS02 FES 1.14.13.61 GO:0003824 ... O05935 15893671
    67380 1z02:E (1.8) BS01 FE 1.14.13.61 GO:0003824 ... O05935 15893671
    67381 1z02:E (1.8) BS02 FES 1.14.13.61 GO:0003824 ... O05935 15893671
    67382 1z02:F (1.8) BS01 FE 1.14.13.61 GO:0003824 ... O05935 15893671
    67383 1z02:F (1.8) BS02 FES 1.14.13.61 GO:0003824 ... O05935 15893671
    67384 1z03:A (1.8) BS01 FE 1.14.13.61 GO:0003824 ... O05935 15893671
    67385 1z03:A (1.8) BS02 FES 1.14.13.61 GO:0003824 ... O05935 15893671
    67386 1z03:A (1.8) BS03 OCH 1.14.13.61 GO:0003824 ... O05935 15893671
    67387 1z03:B (1.8) BS01 FE 1.14.13.61 GO:0003824 ... O05935 15893671
    67388 1z03:B (1.8) BS02 FES 1.14.13.61 GO:0003824 ... O05935 15893671
    67389 1z03:B (1.8) BS03 OCH 1.14.13.61 GO:0003824 ... O05935 15893671
    67390 1z03:C (1.8) BS01 FE 1.14.13.61 GO:0003824 ... O05935 15893671
    67391 1z03:C (1.8) BS02 FES 1.14.13.61 GO:0003824 ... O05935 15893671
    67392 1z03:C (1.8) BS03 OCH 1.14.13.61 GO:0003824 ... O05935 15893671
    67393 1z03:D (1.8) BS01 FE 1.14.13.61 GO:0003824 ... O05935 15893671
    67394 1z03:D (1.8) BS02 FES 1.14.13.61 GO:0003824 ... O05935 15893671
    67395 1z03:D (1.8) BS03 OCH 1.14.13.61 GO:0003824 ... O05935 15893671
    67396 1z03:E (1.8) BS01 FE 1.14.13.61 GO:0003824 ... O05935 15893671
    67397 1z03:E (1.8) BS02 FES 1.14.13.61 GO:0003824 ... O05935 15893671
    67398 1z03:E (1.8) BS03 OCH 1.14.13.61 GO:0003824 ... O05935 15893671
    67399 1z03:F (1.8) BS01 FE 1.14.13.61 GO:0003824 ... O05935 15893671
    67400 1z03:F (1.8) BS02 FES 1.14.13.61 GO:0003824 ... O05935 15893671

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).