SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    68201 1zco:A (2.25) BS01 PEP 2.5.1.54 GO:0003849 ... Q8U0A9 16142893
    68202 1zco:B (2.25) BS01 MN 2.5.1.54 GO:0003849 ... Q8U0A9 16142893
    68203 1zco:B (2.25) BS02 PEP 2.5.1.54 GO:0003849 ... Q8U0A9 16142893
    68204 1zcr:B (1.8) BS01 IOD ? GO:0001523 ... P02766 15981995
    68205 1zct:A (2.6) BS01 MN 2.4.1.186 GO:0016757 ... P13280 15849187
    68206 1zct:A (2.6) BS02 UDP 2.4.1.186 GO:0016757 ... P13280 15849187
    68207 1zct:B (2.6) BS01 MN 2.4.1.186 GO:0016757 ... P13280 15849187
    68208 1zct:B (2.6) BS02 UDP 2.4.1.186 GO:0016757 ... P13280 15849187
    68209 1zcw:A (2.25) BS01 GPP ? GO:0016740 ... Q4R2T2 15959519
    68210 1zd2:P (3.0) BS01 MG 3.1.3.76
    3.3.2.10
    GO:0000287 ... P34913 16322563
    68211 1zd2:P (3.0) BS02 NC3 3.1.3.76
    3.3.2.10
    GO:0000287 ... P34913 16322563 BindingDB: IC50=>500000nM
    68212 1zd3:A (2.3) BS01 MG 3.1.3.76
    3.3.2.10
    GO:0000287 ... P34913 16322563
    68213 1zd3:A (2.3) BS02 NC4 3.1.3.76
    3.3.2.10
    GO:0000287 ... P34913 16322563 MOAD: ic50>500uM
    BindingDB: IC50=36000nM
    68214 1zd4:A (2.7) BS01 MG 3.1.3.76
    3.3.2.10
    GO:0000287 ... P34913 16322563
    68215 1zd4:A (2.7) BS02 NC6 3.1.3.76
    3.3.2.10
    GO:0000287 ... P34913 16322563 BindingDB: IC50=>100000nM
    68216 1zd5:A (2.6) BS01 MG 3.1.3.76
    3.3.2.10
    GO:0000287 ... P34913 16322563
    68217 1zd5:A (2.6) BS02 NC7 3.1.3.76
    3.3.2.10
    GO:0000287 ... P34913 16322563
    68218 1zd9:A (1.7) BS01 GDP ? GO:0003924 ... Q96BM9 N/A
    68219 1zde:A (1.95) BS01 ZN 2.7.7.7 GO:0016539 ... P74750 16219320
    68220 1zde:A (1.95) BS02 CA 2.7.7.7 GO:0016539 ... P74750 16219320
    68221 1zdf:A (2.45) BS01 MN 2.4.1.186 GO:0005634 ... P13280 15849187
    68222 1zdf:A (2.45) BS02 UPG 2.4.1.186 GO:0005634 ... P13280 15849187
    68223 1zdg:A (2.3) BS01 MN 2.4.1.186 GO:0005634 ... P13280 15849187
    68224 1zdg:A (2.3) BS02 UPG 2.4.1.186 GO:0005634 ... P13280 15849187
    68225 1zdh:A (2.7) BS01 rna ? GO:0003723 ... P03612 9245600
    68226 1zdh:C (2.7) BS01 rna ? GO:0003723 ... P03612 9245600
    68227 1zdi:A (2.7) BS01 rna ? GO:0003723 ... P03612 9245600
    68228 1zdi:C (2.7) BS01 rna ? GO:0003723 ... P03612 9245600
    68229 1zdj:A (2.9) BS01 rna ? GO:0003723 ... P03612 9917072
    68230 1zdj:C (2.9) BS01 rna ? GO:0003723 ... P03612 9917072
    68231 1zdk:A (2.86) BS01 rna ? GO:0003723 ... P03612 9917072
    68232 1zdk:C (2.86) BS01 rna ? GO:0003723 ... P03612 9917072
    68233 1zdl:A (3.0) BS01 FAD 1.8.1.9 GO:0000305 ... Q9JLT4 16217027
    68234 1zdl:A (3.0) BS02 NDP 1.8.1.9 GO:0000305 ... Q9JLT4 16217027
    68235 1zdm:A (2.4) BS01 MN ? GO:0000156 ... P0AE67 15741343
    68236 1zdm:A (2.4) BS02 XE ? GO:0000156 ... P0AE67 15741343
    68237 1zdm:B (2.4) BS01 MN ? GO:0000156 ... P0AE67 15741343
    68238 1zdm:B (2.4) BS02 XE ? GO:0000156 ... P0AE67 15741343
    68239 1zdp:E (1.7) BS01 CA 3.4.24.27 GO:0004222 ... P00800 2719912
    68240 1zdp:E (1.7) BS02 CA 3.4.24.27 GO:0004222 ... P00800 2719912
    68241 1zdp:E (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 2719912
    68242 1zdp:E (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 2719912
    68243 1zdp:E (1.7) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 2719912
    68244 1zdp:E (1.7) BS06 TIO 3.4.24.27 GO:0004222 ... P00800 2719912 MOAD: Ki=1.8uM
    BindingDB: Ki=1800nM, IC50=9500nM
    68245 1zdq:A (1.8) BS01 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    68246 1zdq:A (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    68247 1zdq:A (1.8) BS03 MSM 1.7.2.1 GO:0005507 ... P38501 16574144 MOAD: Kd=21.4mM
    68248 1zdq:B (1.8) BS01 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    68249 1zdq:B (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    68250 1zdq:B (1.8) BS03 MSM 1.7.2.1 GO:0005507 ... P38501 16574144 MOAD: Kd=21.4mM
    68251 1zdq:C (1.8) BS01 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    68252 1zdq:C (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    68253 1zdq:C (1.8) BS03 MSM 1.7.2.1 GO:0005507 ... P38501 16574144 MOAD: Kd=21.4mM
    68254 1zds:A (1.55) BS01 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    68255 1zds:A (1.55) BS02 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    68256 1zds:B (1.55) BS01 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    68257 1zds:B (1.55) BS02 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    68258 1zds:C (1.55) BS01 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    68259 1zds:C (1.55) BS02 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    68260 1zdt:A (2.1) BS01 peptide ? GO:0003677 ... Q13285 15897460
    68261 1zdt:B (2.1) BS01 peptide ? GO:0003677 ... Q13285 15897460
    68262 1zdu:A (2.5) BS01 peptide ? GO:0003677 ... O00482 15897460
    68263 1zdu:A (2.5) BS02 peptide ? GO:0003677 ... O00482 15897460
    68264 1zdu:A (2.5) BS03 P3A ? GO:0003677 ... O00482 15897460
    68265 1zdw:A (2.02) BS01 FLV ? GO:0016740 ... Q4R2T2 15959519
    68266 1zdw:A (2.02) BS02 GST ? GO:0016740 ... Q4R2T2 15959519
    68267 1zdy:A (1.44) BS01 T3A ? GO:0016740 ... Q4R2T2 15959519
    68268 1ze1:A (2.9) BS01 MG 5.4.99.25 GO:0001522 ... Q9WZW0 14990747
    68269 1ze1:B (2.9) BS01 MG 5.4.99.25 GO:0001522 ... Q9WZW0 14990747
    68270 1ze1:C (2.9) BS01 MG 5.4.99.25 GO:0001522 ... Q9WZW0 14990747
    68271 1ze1:D (2.9) BS01 MG 5.4.99.25 GO:0001522 ... Q9WZW0 14990747
    68272 1ze2:A (3.0) BS01 rna 5.4.99.25 GO:0001522 ... Q9WZW0 14990747
    68273 1ze2:A (3.0) BS02 rna 5.4.99.25 GO:0001522 ... Q9WZW0 14990747
    68274 1ze2:B (3.0) BS01 rna 5.4.99.25 GO:0001522 ... Q9WZW0 14990747
    68275 1ze2:B (3.0) BS02 rna 5.4.99.25 GO:0001522 ... Q9WZW0 14990747
    68276 1ze8:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 16134940
    68277 1ze8:A (2.0) BS02 HGB 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 16134940
    68278 1ze8:A (2.0) BS03 PIU 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 16134940 MOAD: Ki=21nM
    BindingDB: Ki=21nM
    68279 1zea:H (1.78) BS01 peptide ? N/A Q921A6 17712773
    68280 1zea:L (1.78) BS01 peptide ? GO:0005576 ... A2NHM3 17712773
    68281 1zeb:A (1.9) BS01 ZN 3.1.3.1 GO:0000287 ... P05187 15946677
    68282 1zeb:A (1.9) BS02 ZN 3.1.3.1 GO:0000287 ... P05187 15946677
    68283 1zeb:A (1.9) BS03 MG 3.1.3.1 GO:0000287 ... P05187 15946677
    68284 1zeb:A (1.9) BS04 CA 3.1.3.1 GO:0000287 ... P05187 15946677
    68285 1zed:A (1.57) BS01 ZN 3.1.3.1 GO:0000287 ... P05187 15946677
    68286 1zed:A (1.57) BS02 ZN 3.1.3.1 GO:0000287 ... P05187 15946677
    68287 1zed:A (1.57) BS03 MG 3.1.3.1 GO:0000287 ... P05187 15946677
    68288 1zed:A (1.57) BS04 CA 3.1.3.1 GO:0000287 ... P05187 15946677
    68289 1zed:A (1.57) BS05 PO3 3.1.3.1 GO:0000287 ... P05187 15946677
    68290 1zed:A (1.57) BS06 PNP 3.1.3.1 GO:0000287 ... P05187 15946677
    68291 1zed:A (1.57) BS07 PNP 3.1.3.1 GO:0000287 ... P05187 15946677
    68292 1zef:A (1.9) BS01 PHE 3.1.3.1 GO:0000287 ... P05187 15946677
    68293 1zef:A (1.9) BS02 PHE 3.1.3.1 GO:0000287 ... P05187 15946677
    68294 1zef:A (1.9) BS03 ZN 3.1.3.1 GO:0000287 ... P05187 15946677
    68295 1zef:A (1.9) BS04 ZN 3.1.3.1 GO:0000287 ... P05187 15946677
    68296 1zef:A (1.9) BS05 MG 3.1.3.1 GO:0000287 ... P05187 15946677
    68297 1zef:A (1.9) BS06 CA 3.1.3.1 GO:0000287 ... P05187 15946677
    68298 1zeg:B (1.6) BS01 peptide ? GO:0005179 ... P01308 9708987
    68299 1zeg:B (1.6) BS02 IPH ? GO:0005179 ... P01308 9708987
    68300 1zeg:D (1.6) BS01 peptide ? GO:0005179 ... P01308 9708987
    68301 1zeh:B (1.5) BS01 peptide ? GO:0005179 ... P01308 9708987
    68302 1zeh:B (1.5) BS02 CRS ? GO:0005179 ... P01308 9708987
    68303 1zeh:B (1.5) BS03 CRS ? GO:0005179 ... P01308 9708987
    68304 1zeh:D (1.5) BS01 peptide ? GO:0005179 ... P01308 9708987
    68305 1zeh:D (1.5) BS02 CRS ? GO:0005179 ... P01308 9708987
    68306 1zeh:D (1.5) BS03 CRS ? GO:0005179 ... P01308 9708987
    68307 1zei:A (1.9) BS01 CRS ? GO:0005179 ... P01315 9708987
    68308 1zei:B (1.9) BS01 CRS ? GO:0005179 ... P01315 9708987
    68309 1zei:C (1.9) BS01 CRS ? GO:0005179 ... P01315 9708987
    68310 1zei:D (1.9) BS01 CRS ? GO:0005179 ... P01315 9708987
    68311 1zei:E (1.9) BS01 CRS ? GO:0005179 ... P01315 9708987
    68312 1zei:E (1.9) BS02 CRS ? GO:0005179 ... P01315 9708987
    68313 1zei:F (1.9) BS01 CRS ? GO:0005179 ... P01315 9708987
    68314 1zei:F (1.9) BS02 CRS ? GO:0005179 ... P01315 9708987
    68315 1zem:A (1.9) BS01 NAD 1.1.1.9 GO:0003824 ... Q8GR61 16531240
    68316 1zem:B (1.9) BS01 NAD 1.1.1.9 GO:0003824 ... Q8GR61 16531240
    68317 1zem:C (1.9) BS01 NAD 1.1.1.9 GO:0003824 ... Q8GR61 16531240
    68318 1zem:D (1.9) BS01 NAD 1.1.1.9 GO:0003824 ... Q8GR61 16531240
    68319 1zem:E (1.9) BS01 NAD 1.1.1.9 GO:0003824 ... Q8GR61 16531240
    68320 1zem:F (1.9) BS01 NAD 1.1.1.9 GO:0003824 ... Q8GR61 16531240
    68321 1zem:G (1.9) BS01 NAD 1.1.1.9 GO:0003824 ... Q8GR61 16531240
    68322 1zem:H (1.9) BS01 NAD 1.1.1.9 GO:0003824 ... Q8GR61 16531240
    68323 1zen:A (2.5) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 8939754
    68324 1zen:A (2.5) BS02 ZN 4.1.2.13 GO:0004332 ... P0AB71 8939754
    68325 1zeo:A (2.5) BS01 C01 ? GO:0003677 ... P37231 15974597 MOAD: ic50=0.21uM
    68326 1zes:A (1.9) BS01 MG ? GO:0000160 ... P0AFJ5 16154092
    68327 1zes:A (1.9) BS02 BEF ? GO:0000160 ... P0AFJ5 16154092
    68328 1zes:B (1.9) BS01 MG ? GO:0000160 ... P0AFJ5 16154092
    68329 1zes:B (1.9) BS02 BEF ? GO:0000160 ... P0AFJ5 16154092
    68330 1zes:C (1.9) BS01 MG ? GO:0000160 ... P0AFJ5 16154092
    68331 1zes:C (1.9) BS02 BEF ? GO:0000160 ... P0AFJ5 16154092
    68332 1zet:A (2.3) BS01 dna 2.7.7.7 GO:0003684 ... Q9UNA4 16163299
    68333 1zet:A (2.3) BS02 dna 2.7.7.7 GO:0003684 ... Q9UNA4 16163299
    68334 1zet:A (2.3) BS03 MG 2.7.7.7 GO:0003684 ... Q9UNA4 16163299
    68335 1zet:A (2.3) BS04 TTP 2.7.7.7 GO:0003684 ... Q9UNA4 16163299
    68336 1zfd:A (-1.00) BS01 ZN ? N/A P08153 1453468
    68337 1zfj:A (1.9) BS01 IMP 1.1.1.205 GO:0000166 ... P0C0H6 10200156
    68338 1zfk:A (1.56) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A
    68339 1zfk:A (1.56) BS02 NR2 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A BindingDB: Ki=12nM
    68340 1zfk:A (1.56) BS03 NR2 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A BindingDB: Ki=12nM
    68341 1zfn:A (2.75) BS01 ZN 2.7.7.73 GO:0004792 ... P30138 15896804
    68342 1zfn:A (2.75) BS02 ATP 2.7.7.73 GO:0004792 ... P30138 15896804
    68343 1zfn:B (2.75) BS01 ZN 2.7.7.73 GO:0004792 ... P30138 15896804
    68344 1zfn:B (2.75) BS02 ATP 2.7.7.73 GO:0004792 ... P30138 15896804
    68345 1zfn:C (2.75) BS01 ZN 2.7.7.73 GO:0004792 ... P30138 15896804
    68346 1zfn:C (2.75) BS02 ATP 2.7.7.73 GO:0004792 ... P30138 15896804
    68347 1zfn:D (2.75) BS01 ZN 2.7.7.73 GO:0004792 ... P30138 15896804
    68348 1zfn:D (2.75) BS02 ATP 2.7.7.73 GO:0004792 ... P30138 15896804
    68349 1zfo:A (-1.00) BS01 ZN ? GO:0005856 ... P80171 8841116
    68350 1zfp:E (1.8) BS01 peptide ? N/A P62993 9642078
    68351 1zfp:E (1.8) BS02 ZN ? N/A P62993 9642078
    68352 1zfq:A (1.55) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A
    68353 1zfq:A (1.55) BS02 ZEC 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A BindingDB: Ki=30nM, IC50=4nM
    68354 1zfq:A (1.55) BS03 ZEC 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A BindingDB: Ki=30nM, IC50=4nM
    68355 1zfs:A (-1.00) BS01 CA ? GO:0000122 ... P35467 16169012
    68356 1zfs:A (-1.00) BS02 CA ? GO:0000122 ... P35467 16169012
    68357 1zfs:B (-1.00) BS01 CA ? GO:0000122 ... P35467 16169012
    68358 1zfs:B (-1.00) BS02 CA ? GO:0000122 ... P35467 16169012
    68359 1zg1:A (2.3) BS01 dna ? GO:0003677 ... P0AF28 16262254
    68360 1zg1:A (2.3) BS02 dna ? GO:0003677 ... P0AF28 16262254
    68361 1zg1:B (2.3) BS01 dna ? GO:0003677 ... P0AF28 16262254
    68362 1zg1:B (2.3) BS02 dna ? GO:0003677 ... P0AF28 16262254
    68363 1zg1:E (2.3) BS01 dna ? GO:0003677 ... P0AF28 16262254
    68364 1zg1:E (2.3) BS02 dna ? GO:0003677 ... P0AF28 16262254
    68365 1zg1:F (2.3) BS01 dna ? GO:0003677 ... P0AF28 16262254
    68366 1zg1:F (2.3) BS02 dna ? GO:0003677 ... P0AF28 16262254
    68367 1zg3:A (2.35) BS01 2HI 2.1.1.212
    2.1.1.46
    GO:0008168 ... Q29U70 17172354
    68368 1zg3:A (2.35) BS02 SAH 2.1.1.212
    2.1.1.46
    GO:0008168 ... Q29U70 17172354
    68369 1zg5:A (2.3) BS01 dna ? GO:0003677 ... P0AF28 16262254
    68370 1zg5:A (2.3) BS02 dna ? GO:0003677 ... P0AF28 16262254
    68371 1zg5:B (2.3) BS01 dna ? GO:0003677 ... P0AF28 16262254
    68372 1zg5:B (2.3) BS02 dna ? GO:0003677 ... P0AF28 16262254
    68373 1zg5:E (2.3) BS01 dna ? GO:0003677 ... P0AF28 16262254
    68374 1zg5:E (2.3) BS02 dna ? GO:0003677 ... P0AF28 16262254
    68375 1zg5:F (2.3) BS01 dna ? GO:0003677 ... P0AF28 16262254
    68376 1zg5:F (2.3) BS02 dna ? GO:0003677 ... P0AF28 16262254
    68377 1zg7:A (1.75) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 15982000
    68378 1zg7:A (1.75) BS02 P20 3.4.17.2 GO:0004181 ... P09955 15982000
    68379 1zg7:B (1.75) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 15982000
    68380 1zg7:B (1.75) BS02 P20 3.4.17.2 GO:0004181 ... P09955 15982000
    68381 1zg7:C (1.75) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 15982000
    68382 1zg7:C (1.75) BS02 P20 3.4.17.2 GO:0004181 ... P09955 15982000
    68383 1zg8:A (2.0) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 15982000
    68384 1zg8:A (2.0) BS02 L98 3.4.17.2 GO:0004181 ... P09955 15982000
    68385 1zg8:B (2.0) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 15982000
    68386 1zg8:B (2.0) BS02 L98 3.4.17.2 GO:0004181 ... P09955 15982000
    68387 1zg8:C (2.0) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 15982000
    68388 1zg8:C (2.0) BS02 L98 3.4.17.2 GO:0004181 ... P09955 15982000
    68389 1zg9:A (2.0) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 15982000
    68390 1zg9:A (2.0) BS02 L06 3.4.17.2 GO:0004181 ... P09955 15982000
    68391 1zg9:B (2.0) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 15982000
    68392 1zg9:B (2.0) BS02 L06 3.4.17.2 GO:0004181 ... P09955 15982000
    68393 1zg9:C (2.0) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 15982000
    68394 1zg9:C (2.0) BS02 L06 3.4.17.2 GO:0004181 ... P09955 15982000
    68395 1zga:A (2.35) BS01 HMK 2.1.1.212
    2.1.1.46
    GO:0008168 ... Q29U70 17172354
    68396 1zga:A (2.35) BS02 SAH 2.1.1.212
    2.1.1.46
    GO:0008168 ... Q29U70 17172354
    68397 1zgb:A (2.3) BS01 A1E 3.1.1.7 GO:0001507 ... P04058 16076210 MOAD: ic50=8.8nM
    68398 1zgc:A (2.1) BS01 A2E 3.1.1.7 GO:0001507 ... P04058 16076210 MOAD: ic50=38.8nM
    68399 1zgc:B (2.1) BS01 A2E 3.1.1.7 GO:0001507 ... P04058 16076210 MOAD: ic50=38.8nM
    68400 1zgd:A (1.7) BS01 NAP ? GO:0009821 ... Q40309 15970585

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).