SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    69601 1zzt:A (2.14) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 16285725
    69602 1zzt:A (2.14) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 16285725
    69603 1zzt:A (2.14) BS03 H4B 1.14.13.39 GO:0004517 ... P29473 16285725
    69604 1zzt:A (2.14) BS04 DP9 1.14.13.39 GO:0004517 ... P29473 16285725 MOAD: Ki=1.1uM
    BindingDB: IC50=29000nM, Ki=128000nM
    69605 1zzt:A (2.14) BS05 H4B 1.14.13.39 GO:0004517 ... P29473 16285725
    69606 1zzt:B (2.14) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 16285725
    69607 1zzt:B (2.14) BS02 H4B 1.14.13.39 GO:0004517 ... P29473 16285725
    69608 1zzt:B (2.14) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 16285725
    69609 1zzt:B (2.14) BS04 H4B 1.14.13.39 GO:0004517 ... P29473 16285725
    69610 1zzt:B (2.14) BS05 DP9 1.14.13.39 GO:0004517 ... P29473 16285725 MOAD: Ki=1.1uM
    BindingDB: IC50=29000nM, Ki=128000nM
    69611 1zzu:A (1.9) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 16285725
    69612 1zzu:A (1.9) BS02 MTL 1.14.13.39 GO:0004517 ... P29476 16285725
    69613 1zzu:A (1.9) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 16285725
    69614 1zzu:A (1.9) BS04 H4B 1.14.13.39 GO:0004517 ... P29476 16285725
    69615 1zzu:A (1.9) BS05 DP1 1.14.13.39 GO:0004517 ... P29476 16285725 MOAD: Ki=63.3uM
    BindingDB: Ki=130nM
    69616 1zzu:A (1.9) BS06 H4B 1.14.13.39 GO:0004517 ... P29476 16285725
    69617 1zzu:B (1.9) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 16285725
    69618 1zzu:B (1.9) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 16285725
    69619 1zzu:B (1.9) BS03 MTL 1.14.13.39 GO:0004517 ... P29476 16285725
    69620 1zzu:B (1.9) BS04 HEM 1.14.13.39 GO:0004517 ... P29476 16285725
    69621 1zzu:B (1.9) BS05 H4B 1.14.13.39 GO:0004517 ... P29476 16285725
    69622 1zzu:B (1.9) BS06 DP1 1.14.13.39 GO:0004517 ... P29476 16285725 MOAD: Ki=63.3uM
    BindingDB: Ki=130nM
    69623 1zzz:A (1.9) BS01 0IV 3.4.21.4 GO:0004252 ... P00760 9724521
    69624 1zzz:A (1.9) BS02 CA 3.4.21.4 GO:0004252 ... P00760 9724521
    69625 207l:A (1.8) BS01 SC2 3.2.1.17 GO:0003796 ... P61626 8902616
    69626 208l:A (2.2) BS01 CYS 3.2.1.17 GO:0003796 ... P61626 8902616
    69627 20gs:A (2.45) BS01 CBD 2.5.1.18 GO:0000122 ... P09211 10452896
    69628 20gs:B (2.45) BS01 CBD 2.5.1.18 GO:0000122 ... P09211 10452896
    69629 20xx:A (2.2) BS01 A1MCX N/A N/A P12497 N/A
    69630 21cb:A (3.0) BS01 rna N/A N/A Q9UPY3 41781616
    69631 21cn:D (3.21) BS01 rna N/A N/A Q9UPY3 41781616
    69632 21cn:D (3.21) BS02 CA N/A N/A Q9UPY3 41781616
    69633 21cn:D (3.21) BS03 CA N/A N/A Q9UPY3 41781616
    69634 21cq:D (3.29) BS01 rna N/A N/A Q9UPY3 41781616
    69635 21cq:D (3.29) BS02 CA N/A N/A Q9UPY3 41781616
    69636 21cq:D (3.29) BS03 CA N/A N/A Q9UPY3 41781616
    69637 21dh:A (2.57) BS01 BGC N/A N/A P0AEX9 41660693
    69638 21dh:A (2.57) BS02 GLC N/A N/A P0AEX9 41660693
    69639 21dh:A (2.57) BS03 A1MC1 N/A N/A P0AEX9 41660693
    69640 21dh:B (2.57) BS01 BGC N/A N/A P0AEX9 41660693
    69641 21dh:B (2.57) BS02 GLC N/A N/A P0AEX9 41660693
    69642 21dh:B (2.57) BS03 A1MC1 N/A N/A P0AEX9 41660693
    69643 21dh:C (2.57) BS01 BGC N/A N/A P0AEX9 41660693
    69644 21dh:C (2.57) BS02 GLC N/A N/A P0AEX9 41660693
    69645 21dh:C (2.57) BS03 A1MC1 N/A N/A P0AEX9 41660693
    69646 21dh:D (2.57) BS01 BGC N/A N/A P0AEX9 41660693
    69647 21dh:D (2.57) BS02 GLC N/A N/A P0AEX9 41660693
    69648 21dh:D (2.57) BS03 A1MC1 N/A N/A P0AEX9 41660693
    69649 21dh:E (2.57) BS01 BGC N/A N/A P0AEX9 41660693
    69650 21dh:E (2.57) BS02 GLC N/A N/A P0AEX9 41660693
    69651 21dh:E (2.57) BS03 A1MC1 N/A N/A P0AEX9 41660693
    69652 21dh:F (2.57) BS01 BGC N/A N/A P0AEX9 41660693
    69653 21dh:F (2.57) BS02 GLC N/A N/A P0AEX9 41660693
    69654 21dh:F (2.57) BS03 A1MC1 N/A N/A P0AEX9 41660693
    69655 21du:R (2.9) BS01 OR9 N/A N/A Q86SQ4 41633965
    69656 21ge:A (-1.00) BS01 peptide N/A N/A Q9H8M2 N/A
    69657 21hj:A (-1.00) BS01 peptide N/A N/A Q9H8M2 N/A
    69658 21ih:A (1.87) BS01 POP N/A N/A N/A 41747984
    69659 21ih:A (1.87) BS02 MG N/A N/A N/A 41747984
    69660 21ih:A (1.87) BS03 MG N/A N/A N/A 41747984
    69661 21ih:A (1.87) BS04 MG N/A N/A N/A 41747984
    69662 21ih:B (1.87) BS01 POP N/A N/A N/A 41747984
    69663 21ih:B (1.87) BS02 MG N/A N/A N/A 41747984
    69664 21ih:B (1.87) BS03 MG N/A N/A N/A 41747984
    69665 21ih:B (1.87) BS04 MG N/A N/A N/A 41747984
    69666 21ii:A (1.74) BS01 GPP N/A N/A N/A 41747984
    69667 21ii:A (1.74) BS02 MG N/A N/A N/A 41747984
    69668 21ii:A (1.74) BS03 MG N/A N/A N/A 41747984
    69669 21ii:A (1.74) BS04 MG N/A N/A N/A 41747984
    69670 21ii:B (1.74) BS01 POP N/A N/A N/A 41747984
    69671 21ii:B (1.74) BS02 MG N/A N/A N/A 41747984
    69672 21ii:B (1.74) BS03 MG N/A N/A N/A 41747984
    69673 21ii:B (1.74) BS04 MG N/A N/A N/A 41747984
    69674 21jx:A (2.34) BS01 A1MC7 N/A N/A P40261 N/A
    69675 21jx:B (2.34) BS01 A1MC7 N/A N/A P40261 N/A
    69676 21jx:C (2.34) BS01 A1MC7 N/A N/A P40261 N/A
    69677 21jx:D (2.34) BS01 A1MC7 N/A N/A P40261 N/A
    69678 21kg:A (1.6) BS01 GLC N/A GO:0003844 ... C7H686 N/A
    69679 21kg:A (1.6) BS02 GLC N/A GO:0003844 ... C7H686 N/A
    69680 21kg:A (1.6) BS03 GLC N/A GO:0003844 ... C7H686 N/A
    69681 21kg:A (1.6) BS04 GLC N/A GO:0003844 ... C7H686 N/A
    69682 21kg:A (1.6) BS05 GLC N/A GO:0003844 ... C7H686 N/A
    69683 21kg:A (1.6) BS06 GLC N/A GO:0003844 ... C7H686 N/A
    69684 21kg:A (1.6) BS07 GLC N/A GO:0003844 ... C7H686 N/A
    69685 21kl:A (3.19) BS01 rna N/A N/A N/A N/A
    69686 21kl:A (3.19) BS02 dna N/A N/A N/A N/A
    69687 21kl:A (3.19) BS03 dna N/A N/A N/A N/A
    69688 21kl:B (3.19) BS01 rna N/A N/A N/A N/A
    69689 21kl:B (3.19) BS02 dna N/A N/A N/A N/A
    69690 21kl:B (3.19) BS03 dna N/A N/A N/A N/A
    69691 21ln:A (2.01) BS01 A1MC9 N/A N/A P40261 N/A
    69692 21ln:B (2.01) BS01 A1MC9 N/A N/A P40261 N/A
    69693 21nj:A (2.26) BS01 A1MDA N/A N/A P40261 N/A
    69694 21nj:B (2.26) BS01 A1MDA N/A N/A P40261 N/A
    69695 21nl:A (2.01) BS01 A1MDB N/A N/A P40261 N/A
    69696 21nl:B (2.01) BS01 A1MDB N/A N/A P40261 N/A
    69697 21tp:A (3.0) BS01 Y01 N/A N/A Q15858 N/A
    69698 21tp:A (3.0) BS02 Y01 N/A N/A Q15858 N/A
    69699 21tp:A (3.0) BS03 Y01 N/A N/A Q15858 N/A
    69700 21tp:A (3.0) BS04 LPE N/A N/A Q15858 N/A
    69701 21tp:A (3.0) BS05 LPE N/A N/A Q15858 N/A
    69702 21tp:A (3.0) BS06 LPE N/A N/A Q15858 N/A
    69703 21tp:A (3.0) BS07 LPE N/A N/A Q15858 N/A
    69704 21tp:A (3.0) BS08 LPE N/A N/A Q15858 N/A
    69705 21tp:A (3.0) BS09 Y01 N/A N/A Q15858 N/A
    69706 21tp:A (3.0) BS10 A1E26 N/A N/A Q15858 N/A
    69707 21tp:B (3.0) BS01 LPE N/A N/A Q07699 N/A
    69708 21tq:A (2.7) BS01 A1E26 N/A N/A Q15858 N/A
    69709 21tq:A (2.7) BS02 Y01 N/A N/A Q15858 N/A
    69710 21tq:A (2.7) BS03 Y01 N/A N/A Q15858 N/A
    69711 21tq:A (2.7) BS04 Y01 N/A N/A Q15858 N/A
    69712 21tq:A (2.7) BS05 LPE N/A N/A Q15858 N/A
    69713 21tq:A (2.7) BS06 LPE N/A N/A Q15858 N/A
    69714 21tq:A (2.7) BS07 LPE N/A N/A Q15858 N/A
    69715 21tq:A (2.7) BS08 LPE N/A N/A Q15858 N/A
    69716 21tq:A (2.7) BS09 P3X N/A N/A Q15858 N/A
    69717 21we:A (2.91) BS01 rna N/A N/A N/A N/A
    69718 21wj:A (2.87) BS01 rna N/A N/A N/A N/A
    69719 21wj:A (2.87) BS02 rna N/A N/A N/A N/A
    69720 21wj:A (2.87) BS03 ZN N/A N/A N/A N/A
    69721 220l:A (1.85) BS01 BNZ 3.2.1.17 GO:0003796 ... P00720 9514755 MOAD: Kd=0.4mM
    69722 221p:A (2.3) BS01 MG 3.6.5.2 GO:0003924 ... P01112 2199064
    69723 221p:A (2.3) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 2199064
    69724 223l:A (1.9) BS01 BNZ 3.2.1.17 GO:0003796 ... P00720 9514755 MOAD: Kd=0.4mM
    69725 225l:A (1.9) BS01 PXY 3.2.1.17 GO:0003796 ... P00720 9514755 BindingDB: Kd=151000nM
    69726 227l:A (2.0) BS01 BNZ 3.2.1.17 GO:0003796 ... P00720 9514755
    69727 22dr:A (1.9) BS01 A1MDL N/A N/A P0DTC1 41819156
    69728 22dr:B (1.9) BS01 A1MDL N/A N/A P0DTC1 41819156
    69729 22fx:A (1.24) BS01 ZN N/A GO:0004322 ... P09528 N/A
    69730 22ga:A (1.94) BS01 A3P N/A N/A A0A1B6PTZ0 N/A
    69731 22ga:B (1.94) BS01 A3P N/A N/A A0A1B6PTZ0 N/A
    69732 22ix:A (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69733 22ix:B (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69734 22ix:C (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69735 22ix:D (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69736 22ix:E (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69737 22ix:F (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69738 22ix:G (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69739 22ix:H (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69740 22ix:I (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69741 22ix:J (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69742 22ix:K (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69743 22ix:L (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69744 22ix:M (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69745 22ix:N (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69746 22ix:O (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69747 22ix:P (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69748 22ix:Q (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69749 22ix:R (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69750 22ix:S (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69751 22ix:T (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69752 22ix:U (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69753 22ix:V (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69754 22ix:W (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69755 22ix:X (2.71) BS01 MG N/A GO:0004322 ... P09528 N/A
    69756 22mj:A (1.9) BS01 A1MDP N/A N/A N/A 41748720
    69757 22oc:A (2.0) BS01 CA N/A N/A N/A N/A
    69758 22oc:A (2.0) BS02 CA N/A N/A N/A N/A
    69759 22rb:C (1.75) BS01 A1E4N N/A GO:0004082 ... P18669 N/A
    69760 22rh:B (2.28) BS01 A1E4P N/A GO:0004082 ... P18669 N/A
    69761 22rh:C (2.28) BS01 A1E4P N/A GO:0004082 ... P18669 N/A
    69762 22rh:C (2.28) BS02 A1E4P N/A GO:0004082 ... P18669 N/A
    69763 22rl:B (3.19) BS01 A1E4O N/A GO:0004082 ... P18669 N/A
    69764 22rl:C (3.19) BS01 A1E4O N/A GO:0004082 ... P18669 N/A
    69765 22rl:C (3.19) BS02 A1E4O N/A GO:0004082 ... P18669 N/A
    69766 22tg:A (2.4) BS01 A1MDU N/A N/A Q9H7Z6 N/A
    69767 22tg:C (2.4) BS01 A1MDU N/A N/A Q9H7Z6 N/A
    69768 22tn:C (2.03) BS01 A1E4Q N/A GO:0004082 ... P18669 N/A
    69769 22wm:B (1.91) BS01 A1E4R N/A GO:0004082 ... P18669 N/A
    69770 22wm:C (1.91) BS01 A1E4R N/A GO:0004082 ... P18669 N/A
    69771 22xh:A (1.6) BS01 FUC N/A N/A N/A N/A
    69772 22xh:B (1.6) BS01 FUC N/A N/A N/A N/A
    69773 22za:A (2.278) BS01 MG N/A N/A N/A 41702187
    69774 22za:A (2.278) BS02 MG N/A N/A N/A 41702187
    69775 22za:B (2.278) BS01 MG N/A N/A N/A 41702187
    69776 22za:B (2.278) BS02 MG N/A N/A N/A 41702187
    69777 22za:B (2.278) BS03 MG N/A N/A N/A 41702187
    69778 22zw:A (2.35) BS01 P N/A N/A A0A1V0QSQ1 N/A
    69779 22zw:B (2.35) BS01 P N/A N/A A0A1V0QSQ1 N/A
    69780 23es:A (1.74) BS01 A1E5A N/A N/A Q99640 N/A
    69781 23es:B (1.74) BS01 A1E5A N/A N/A Q99640 N/A
    69782 23fw:A (1.59) BS01 A1E5J N/A N/A Q99640 N/A
    69783 23fw:B (1.59) BS01 A1E5J N/A N/A Q99640 N/A
    69784 23om:A (1.7) BS01 8V5 N/A GO:0004089 ... P00921 41834583
    69785 23om:A (1.7) BS02 ZN N/A GO:0004089 ... P00921 41834583
    69786 23om:B (1.7) BS01 8V5 N/A GO:0004089 ... P00921 41834583
    69787 23om:B (1.7) BS02 ZN N/A GO:0004089 ... P00921 41834583
    69788 23on:A (1.5) BS01 8V8 N/A GO:0004089 ... P00921 41834583
    69789 23on:A (1.5) BS02 ZN N/A GO:0004089 ... P00921 41834583
    69790 23on:B (1.5) BS01 8V8 N/A GO:0004089 ... P00921 41834583
    69791 23on:B (1.5) BS02 ZN N/A GO:0004089 ... P00921 41834583
    69792 23qh:E (2.1) BS01 peptide N/A N/A N/A N/A
    69793 23qh:E (2.1) BS02 peptide N/A N/A N/A N/A
    69794 23ri:A (-1.00) BS01 ZN N/A N/A N/A N/A
    69795 23si:A (1.5) BS01 FER N/A N/A P00698 N/A
    69796 23si:A (1.5) BS02 FER N/A N/A P00698 N/A
    69797 23vy:A (2.7) BS01 CLR N/A N/A N/A N/A
    69798 23vy:B (2.7) BS01 CLR N/A N/A N/A N/A
    69799 24ib:A (2.05) BS01 A1E6Q N/A N/A Q13546 N/A
    69800 24ib:B (2.05) BS01 A1E6Q N/A N/A Q13546 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).