SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    72401 2axt:B (3.0) BS04 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72402 2axt:B (3.0) BS05 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72403 2axt:B (3.0) BS06 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72404 2axt:B (3.0) BS07 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72405 2axt:B (3.0) BS08 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72406 2axt:B (3.0) BS09 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72407 2axt:B (3.0) BS10 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72408 2axt:B (3.0) BS11 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72409 2axt:B (3.0) BS12 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72410 2axt:B (3.0) BS13 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72411 2axt:B (3.0) BS14 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72412 2axt:B (3.0) BS15 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72413 2axt:B (3.0) BS16 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72414 2axt:C (3.0) BS01 UNK ? GO:0005737 ... Q8DIF8 16355230
    72415 2axt:C (3.0) BS02 CLA ? GO:0005737 ... Q8DIF8 16355230
    72416 2axt:C (3.0) BS03 CLA ? GO:0005737 ... Q8DIF8 16355230
    72417 2axt:C (3.0) BS04 CLA ? GO:0005737 ... Q8DIF8 16355230
    72418 2axt:C (3.0) BS05 CLA ? GO:0005737 ... Q8DIF8 16355230
    72419 2axt:C (3.0) BS06 CLA ? GO:0005737 ... Q8DIF8 16355230
    72420 2axt:C (3.0) BS07 CLA ? GO:0005737 ... Q8DIF8 16355230
    72421 2axt:C (3.0) BS08 CLA ? GO:0005737 ... Q8DIF8 16355230
    72422 2axt:C (3.0) BS09 CLA ? GO:0005737 ... Q8DIF8 16355230
    72423 2axt:C (3.0) BS10 CLA ? GO:0005737 ... Q8DIF8 16355230
    72424 2axt:C (3.0) BS11 CLA ? GO:0005737 ... Q8DIF8 16355230
    72425 2axt:C (3.0) BS12 CLA ? GO:0005737 ... Q8DIF8 16355230
    72426 2axt:C (3.0) BS13 CLA ? GO:0005737 ... Q8DIF8 16355230
    72427 2axt:C (3.0) BS14 CLA ? GO:0005737 ... Q8DIF8 16355230
    72428 2axt:D (3.0) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    72429 2axt:D (3.0) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    72430 2axt:D (3.0) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    72431 2axt:D (3.0) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    72432 2axt:D (3.0) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    72433 2axt:D (3.0) BS06 BCT 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    72434 2axt:D (3.0) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    72435 2axt:D (3.0) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    72436 2axt:E (3.0) BS01 HEM ? GO:0005506 ... Q8DIP0 16355230
    72437 2axt:F (3.0) BS01 HEM ? GO:0005506 ... Q8DIN9 16355230
    72438 2axt:H (3.0) BS01 CLA ? GO:0009523 ... Q8DJ43 16355230
    72439 2axt:H (3.0) BS02 CLA ? GO:0009523 ... Q8DJ43 16355230
    72440 2axt:H (3.0) BS03 CLA ? GO:0009523 ... Q8DJ43 16355230
    72441 2axt:H (3.0) BS04 CLA ? GO:0009523 ... Q8DJ43 16355230
    72442 2axt:I (3.0) BS01 CLA ? GO:0005737 ... Q8DJZ6 16355230
    72443 2axt:K (3.0) BS01 CLA ? GO:0009523 ... Q9F1K9 16355230
    72444 2axt:K (3.0) BS02 CLA ? GO:0009523 ... Q9F1K9 16355230
    72445 2axt:K (3.0) BS03 CA ? GO:0009523 ... Q9F1K9 16355230
    72446 2axt:V (3.0) BS01 HEM ? GO:0005506 ... P0A386 16355230
    72447 2axt:X (3.0) BS01 CLA N/A N/A N/A 16355230
    72448 2axt:Z (3.0) BS01 CLA ? GO:0009523 ... Q8DHJ2 16355230
    72449 2axt:a (3.0) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 16355230
    72450 2axt:a (3.0) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    72451 2axt:a (3.0) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    72452 2axt:a (3.0) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    72453 2axt:a (3.0) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 16355230
    72454 2axt:a (3.0) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 16355230
    72455 2axt:a (3.0) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    72456 2axt:a (3.0) BS08 OEC 1.10.3.9 GO:0005506 ... P0A444 16355230
    72457 2axt:a (3.0) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    72458 2axt:a (3.0) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 16355230
    72459 2axt:a (3.0) BS11 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    72460 2axt:b (3.0) BS01 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72461 2axt:b (3.0) BS02 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72462 2axt:b (3.0) BS03 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72463 2axt:b (3.0) BS04 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72464 2axt:b (3.0) BS05 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72465 2axt:b (3.0) BS06 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72466 2axt:b (3.0) BS07 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72467 2axt:b (3.0) BS08 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72468 2axt:b (3.0) BS09 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72469 2axt:b (3.0) BS10 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72470 2axt:b (3.0) BS11 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72471 2axt:b (3.0) BS12 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72472 2axt:b (3.0) BS13 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72473 2axt:b (3.0) BS14 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72474 2axt:b (3.0) BS15 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72475 2axt:b (3.0) BS16 CLA ? GO:0009521 ... Q8DIQ1 16355230
    72476 2axt:c (3.0) BS01 UNK ? GO:0005737 ... Q8DIF8 16355230
    72477 2axt:c (3.0) BS02 CLA ? GO:0005737 ... Q8DIF8 16355230
    72478 2axt:c (3.0) BS03 CLA ? GO:0005737 ... Q8DIF8 16355230
    72479 2axt:c (3.0) BS04 CLA ? GO:0005737 ... Q8DIF8 16355230
    72480 2axt:c (3.0) BS05 CLA ? GO:0005737 ... Q8DIF8 16355230
    72481 2axt:c (3.0) BS06 CLA ? GO:0005737 ... Q8DIF8 16355230
    72482 2axt:c (3.0) BS07 CLA ? GO:0005737 ... Q8DIF8 16355230
    72483 2axt:c (3.0) BS08 CLA ? GO:0005737 ... Q8DIF8 16355230
    72484 2axt:c (3.0) BS09 CLA ? GO:0005737 ... Q8DIF8 16355230
    72485 2axt:c (3.0) BS10 CLA ? GO:0005737 ... Q8DIF8 16355230
    72486 2axt:c (3.0) BS11 CLA ? GO:0005737 ... Q8DIF8 16355230
    72487 2axt:c (3.0) BS12 CLA ? GO:0005737 ... Q8DIF8 16355230
    72488 2axt:c (3.0) BS13 CLA ? GO:0005737 ... Q8DIF8 16355230
    72489 2axt:c (3.0) BS14 CLA ? GO:0005737 ... Q8DIF8 16355230
    72490 2axt:d (3.0) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    72491 2axt:d (3.0) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    72492 2axt:d (3.0) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    72493 2axt:d (3.0) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    72494 2axt:d (3.0) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    72495 2axt:d (3.0) BS06 BCT 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    72496 2axt:d (3.0) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    72497 2axt:d (3.0) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    72498 2axt:e (3.0) BS01 HEM ? GO:0005506 ... Q8DIP0 16355230
    72499 2axt:f (3.0) BS01 HEM ? GO:0005506 ... Q8DIN9 16355230
    72500 2axt:h (3.0) BS01 CLA ? GO:0009523 ... Q8DJ43 16355230
    72501 2axt:h (3.0) BS02 CLA ? GO:0009523 ... Q8DJ43 16355230
    72502 2axt:h (3.0) BS03 CLA ? GO:0009523 ... Q8DJ43 16355230
    72503 2axt:h (3.0) BS04 CLA ? GO:0009523 ... Q8DJ43 16355230
    72504 2axt:i (3.0) BS01 CLA ? GO:0005737 ... Q8DJZ6 16355230
    72505 2axt:j (3.0) BS01 UNK ? GO:0009523 ... P59087 16355230
    72506 2axt:k (3.0) BS01 CLA ? GO:0009523 ... Q9F1K9 16355230
    72507 2axt:k (3.0) BS02 CLA ? GO:0009523 ... Q9F1K9 16355230
    72508 2axt:k (3.0) BS03 CA ? GO:0009523 ... Q9F1K9 16355230
    72509 2axt:v (3.0) BS01 HEM ? GO:0005506 ... P0A386 16355230
    72510 2axt:z (3.0) BS01 CLA ? GO:0009523 ... Q8DHJ2 16355230
    72511 2axx:A (-1.00) BS01 HEM ? GO:0020037 ... P00173 9425037
    72512 2axy:A (1.7) BS01 dna ? GO:0003676 ... Q15366 16186123
    72513 2axy:B (1.7) BS01 dna ? GO:0003676 ... Q15366 16186123
    72514 2axy:C (1.7) BS01 dna ? GO:0003676 ... Q15366 16186123
    72515 2axy:D (1.7) BS01 dna ? GO:0003676 ... Q15366 16186123
    72516 2axz:A (3.0) BS01 peptide ? GO:0003677 ... Q04114 16339309
    72517 2axz:B (3.0) BS01 peptide ? GO:0003677 ... Q04114 16339309
    72518 2axz:B (3.0) BS02 peptide ? GO:0003677 ... Q04114 16339309
    72519 2axz:C (3.0) BS01 peptide ? GO:0003677 ... Q04114 16339309
    72520 2axz:D (3.0) BS01 peptide ? GO:0003677 ... Q04114 16339309
    72521 2ay1:A (2.2) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9930977
    72522 2ay1:A (2.2) BS02 AHC 2.6.1.57 GO:0004069 ... P95468 9930977
    72523 2ay1:B (2.2) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9930977
    72524 2ay1:B (2.2) BS02 AHC 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=5.14mM
    72525 2ay2:A (2.4) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9930977
    72526 2ay2:B (2.4) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9930977
    72527 2ay2:B (2.4) BS02 CXP 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=13.1mM
    72528 2ay3:A (2.4) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9930977
    72529 2ay3:A (2.4) BS02 MPP 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=0.28mM
    72530 2ay3:B (2.4) BS01 MPP 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=0.28mM
    72531 2ay3:B (2.4) BS02 PLP 2.6.1.57 GO:0004069 ... P95468 9930977
    72532 2ay3:B (2.4) BS03 MPP 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=0.28mM
    72533 2ay4:A (2.2) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9930977
    72534 2ay4:B (2.2) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9930977
    72535 2ay4:B (2.2) BS02 PPT 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=1.24mM
    72536 2ay5:A (2.4) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9930977
    72537 2ay5:A (2.4) BS02 IOP 2.6.1.57 GO:0004069 ... P95468 9930977
    72538 2ay5:B (2.4) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9930977
    72539 2ay5:B (2.4) BS02 IOP 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=2.6mM
    72540 2ay6:A (2.2) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9930977
    72541 2ay6:A (2.2) BS02 3IB 2.6.1.57 GO:0004069 ... P95468 9930977
    72542 2ay6:B (2.2) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9930977
    72543 2ay6:B (2.2) BS02 3IB 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=0.78mM
    72544 2ay7:A (2.4) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9930977
    72545 2ay7:A (2.4) BS02 CLT 2.6.1.57 GO:0004069 ... P95468 9930977
    72546 2ay7:B (2.4) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9930977
    72547 2ay7:B (2.4) BS02 CLT 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=5mM
    72548 2ay8:A (2.2) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9930977
    72549 2ay8:A (2.2) BS02 4TB 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=5.8mM
    72550 2ay8:A (2.2) BS03 4TB 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=5.8mM
    72551 2ay8:B (2.2) BS01 4TB 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=5.8mM
    72552 2ay8:B (2.2) BS02 PLP 2.6.1.57 GO:0004069 ... P95468 9930977
    72553 2ay8:B (2.2) BS03 4TB 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=5.8mM
    72554 2ay9:A (2.5) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9930977
    72555 2ay9:A (2.5) BS02 5PV 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=6.9mM
    72556 2ay9:A (2.5) BS03 5PV 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=6.9mM
    72557 2ay9:B (2.5) BS01 5PV 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=6.9mM
    72558 2ay9:B (2.5) BS02 PLP 2.6.1.57 GO:0004069 ... P95468 9930977
    72559 2ay9:B (2.5) BS03 5PV 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=6.9mM
    72560 2ayb:A (3.2) BS01 dna ? GO:0003677 ... Q84294 16914454
    72561 2ayb:A (3.2) BS02 dna ? GO:0003677 ... Q84294 16914454
    72562 2ayb:B (3.2) BS01 dna ? GO:0003677 ... Q84294 16914454
    72563 2ayb:B (3.2) BS02 dna ? GO:0003677 ... Q84294 16914454
    72564 2ayd:A (1.6) BS01 ZN ? GO:0003700 ... Q9SI37 17264121
    72565 2ayg:A (3.1) BS01 dna ? GO:0003677 ... Q84294 16914454
    72566 2ayg:A (3.1) BS02 dna ? GO:0003677 ... Q84294 16914454
    72567 2ayg:B (3.1) BS01 dna ? GO:0003677 ... Q84294 16914454
    72568 2ayg:B (3.1) BS02 dna ? GO:0003677 ... Q84294 16914454
    72569 2ayh:A (1.6) BS01 CA 3.2.1.73 GO:0004553 ... P23904 7588726
    72570 2ayi:A (3.7) BS01 ZN 3.4.11.- GO:0004177 ... P42778 16242715
    72571 2ayi:A (3.7) BS02 ZN 3.4.11.- GO:0004177 ... P42778 16242715
    72572 2ayi:B (3.7) BS01 ZN 3.4.11.- GO:0004177 ... P42778 16242715
    72573 2ayi:B (3.7) BS02 ZN 3.4.11.- GO:0004177 ... P42778 16242715
    72574 2ayi:C (3.7) BS01 ZN 3.4.11.- GO:0004177 ... P42778 16242715
    72575 2ayi:C (3.7) BS02 ZN 3.4.11.- GO:0004177 ... P42778 16242715
    72576 2ayi:D (3.7) BS01 ZN 3.4.11.- GO:0004177 ... P42778 16242715
    72577 2ayi:D (3.7) BS02 ZN 3.4.11.- GO:0004177 ... P42778 16242715
    72578 2ayi:E (3.7) BS01 ZN 3.4.11.- GO:0004177 ... P42778 16242715
    72579 2ayi:E (3.7) BS02 ZN 3.4.11.- GO:0004177 ... P42778 16242715
    72580 2ayj:A (-1.00) BS01 ZN ? GO:0003735 ... Q980V5 18218710
    72581 2ayk:A (-1.00) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 9484219
    72582 2ayk:A (-1.00) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 9484219
    72583 2ayk:A (-1.00) BS03 CA 3.4.24.7 GO:0004222 ... P03956 9484219
    72584 2ayl:A (2.0) BS01 MAN 1.14.99.1 GO:0001516 ... P05979 16421446
    72585 2ayl:A (2.0) BS02 FLP 1.14.99.1 GO:0001516 ... P05979 16421446 BindingDB: IC50=150nM, Ki=1000nM
    72586 2ayl:A (2.0) BS03 MNH 1.14.99.1 GO:0001516 ... P05979 16421446
    72587 2ayl:B (2.0) BS01 MAN 1.14.99.1 GO:0001516 ... P05979 16421446
    72588 2ayl:B (2.0) BS02 FLP 1.14.99.1 GO:0001516 ... P05979 16421446 BindingDB: IC50=150nM, Ki=1000nM
    72589 2ayl:B (2.0) BS03 MNH 1.14.99.1 GO:0001516 ... P05979 16421446
    72590 2ayp:A (2.9) BS01 43A 2.7.11.1 GO:0000077 ... O14757 16242328 BindingDB: IC50=7nM
    72591 2ayr:A (1.9) BS01 L4G ? N/A P03372 16250633 MOAD: Ki=0.51nM
    BindingDB: Ki=0.47nM, EC50=10.7nM
    72592 2ays:A (1.86) BS01 MAN 3.4.21.- GO:0005576 ... P24627 N/A
    72593 2ays:A (1.86) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    72594 2ays:A (1.86) BS03 CO3 3.4.21.- GO:0005576 ... P24627 N/A
    72595 2ayw:A (0.97) BS01 CA 3.4.21.4 GO:0004175 ... P00760 17372355
    72596 2ayw:A (0.97) BS02 ONO 3.4.21.4 GO:0004175 ... P00760 17372355
    72597 2ayw:A (0.97) BS03 ONO 3.4.21.4 GO:0004175 ... P00760 17372355
    72598 2az0:A (2.6) BS01 rna ? N/A P68831 16228003
    72599 2az0:A (2.6) BS02 rna ? N/A P68831 16228003
    72600 2az0:B (2.6) BS01 rna ? N/A P68831 16228003

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).