SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    731001 7wm3:C (1.62) BS02 dna ? GO:0003676 ... P22626 36528084
    731002 7wm3:C (1.62) BS03 dna ? GO:0003676 ... P22626 36528084
    731003 7wm3:D (1.62) BS01 dna ? GO:0003676 ... P22626 36528084
    731004 7wm3:D (1.62) BS02 dna ? GO:0003676 ... P22626 36528084
    731005 7wm3:D (1.62) BS03 dna ? GO:0003676 ... P22626 36528084
    731006 7wm4:C (3.2) BS01 rna ? N/A Q99MB1 36631495
    731007 7wm4:C (3.2) BS02 rna ? N/A Q99MB1 36631495
    731008 7wm4:D (3.2) BS01 rna ? N/A Q99MB1 36631495
    731009 7wm4:D (3.2) BS02 rna ? N/A Q99MB1 36631495
    731010 7wm4:E (3.2) BS01 rna ? N/A Q99MB1 36631495
    731011 7wm4:E (3.2) BS02 rna ? N/A Q99MB1 36631495
    731012 7wm4:F (3.2) BS01 rna ? N/A Q99MB1 36631495
    731013 7wm4:F (3.2) BS02 rna ? N/A Q99MB1 36631495
    731014 7wm6:A (2.54) BS01 SAH ? GO:0003676 ... A0A0C2W699 35481631
    731015 7wm6:C (2.54) BS01 SAH ? GO:0003676 ... A0A0C2W699 35481631
    731016 7wm6:D (2.54) BS01 SAH ? GO:0003676 ... A0A0C2W699 35481631
    731017 7wm7:A (2.4) BS01 ZN 6.1.1.3 GO:0000166 ... V7II86 35363470
    731018 7wm7:A (2.4) BS02 9I6 6.1.1.3 GO:0000166 ... V7II86 35363470
    731019 7wm7:B (2.4) BS01 ZN 6.1.1.3 GO:0000166 ... V7II86 35363470
    731020 7wm7:B (2.4) BS02 9I6 6.1.1.3 GO:0000166 ... V7II86 35363470
    731021 7wmb:A (2.2) BS01 MG 4.1.1.46 GO:0005575 ... P80402 N/A
    731022 7wmb:A (2.2) BS02 CAQ 4.1.1.46 GO:0005575 ... P80402 N/A
    731023 7wmb:B (2.2) BS01 MG 4.1.1.46 GO:0005575 ... P80402 N/A
    731024 7wmb:B (2.2) BS02 CAQ 4.1.1.46 GO:0005575 ... P80402 N/A
    731025 7wmc:A (2.55) BS01 peptide 2.1.1.1 GO:0005737 ... P40261 35904556
    731026 7wmc:A (2.55) BS02 peptide 2.1.1.1 GO:0005737 ... P40261 35904556
    731027 7wmc:A (2.55) BS03 peptide 2.1.1.1 GO:0005737 ... P40261 35904556
    731028 7wmc:B (2.55) BS01 peptide 2.1.1.1 GO:0005737 ... P40261 35904556
    731029 7wmc:B (2.55) BS02 peptide 2.1.1.1 GO:0005737 ... P40261 35904556
    731030 7wmc:B (2.55) BS03 peptide 2.1.1.1 GO:0005737 ... P40261 35904556
    731031 7wmd:A (2.0) BS01 CA ? GO:0016491 ... A0A6B8QJ68 35613468
    731032 7wmd:A (2.0) BS02 CA ? GO:0016491 ... A0A6B8QJ68 35613468
    731033 7wmd:A (2.0) BS03 CA ? GO:0016491 ... A0A6B8QJ68 35613468
    731034 7wmf:A (2.1) BS01 9I9 6.1.1.3 GO:0000166 ... V7II86 35363470
    731035 7wmf:A (2.1) BS02 ZN 6.1.1.3 GO:0000166 ... V7II86 35363470
    731036 7wmf:B (2.1) BS01 9I9 6.1.1.3 GO:0000166 ... V7II86 35363470
    731037 7wmf:B (2.1) BS02 ZN 6.1.1.3 GO:0000166 ... V7II86 35363470
    731038 7wmg:A (2.93) BS01 peptide ? GO:0003677 ... P10828 35507418
    731039 7wmg:A (2.93) BS02 9IF ? GO:0003677 ... P10828 35507418
    731040 7wmh:A (1.97) BS01 peptide ? GO:0003677 ... P10828 35507418
    731041 7wmh:A (1.97) BS02 9II ? GO:0003677 ... P10828 35507418
    731042 7wmi:A (2.0) BS01 ZN 6.1.1.3 GO:0000166 ... V7II86 35363470
    731043 7wmi:A (2.0) BS02 9IC 6.1.1.3 GO:0000166 ... V7II86 35363470
    731044 7wmi:B (2.0) BS01 ZN 6.1.1.3 GO:0000166 ... V7II86 35363470
    731045 7wmi:B (2.0) BS02 9IC 6.1.1.3 GO:0000166 ... V7II86 35363470
    731046 7wmj:A (2.81) BS01 peptide ? GO:0003677 ... P10828 35507418
    731047 7wmj:A (2.81) BS02 9IL ? GO:0003677 ... P10828 35507418
    731048 7wmk:A (1.47) BS01 PQQ ? GO:0016491 ... A0A6B8QJ68 35613468
    731049 7wmk:A (1.47) BS02 CA ? GO:0016491 ... A0A6B8QJ68 35613468
    731050 7wml:A (2.67) BS01 peptide ? GO:0003677 ... P10828 35507418
    731051 7wml:A (2.67) BS02 9IQ ? GO:0003677 ... P10828 35507418
    731052 7wmm:A (2.6) BS01 1KI ? GO:0000122 ... P37840 N/A
    731053 7wmm:C (2.6) BS01 1KI ? GO:0000122 ... P37840 N/A
    731054 7wmm:D (2.6) BS01 1KI ? GO:0000122 ... P37840 N/A
    731055 7wmm:E (2.6) BS01 1KI ? GO:0000122 ... P37840 N/A
    731056 7wmm:F (2.6) BS01 1KI ? GO:0000122 ... P37840 N/A
    731057 7wmn:A (2.57) BS01 peptide ? GO:0003677 ... P10828 35507418
    731058 7wmn:A (2.57) BS02 9IT ? GO:0003677 ... P10828 35507418
    731059 7wmo:A (2.56) BS01 peptide ? GO:0003677 ... P10828 35507418
    731060 7wmo:A (2.56) BS02 9IW ? GO:0003677 ... P10828 35507418
    731061 7wmq:A (2.37) BS01 JFL ? N/A P25440 35333526
    731062 7wmq:B (2.37) BS01 JFL ? N/A P25440 35333526
    731063 7wmq:C (2.37) BS01 JFL ? N/A P25440 35333526
    731064 7wmq:D (2.37) BS01 JFL ? N/A P25440 35333526
    731065 7wmt:A (1.77) BS01 1IV 2.1.1.1 GO:0008168 ... P40261 35904556
    731066 7wmu:A (1.73) BS01 JGF ? N/A P25440 35333526
    731067 7wmv:A (3.2) BS01 1YI ? GO:0000017 ... P13866 36307403
    731068 7wmz:A (1.916) BS01 NAI ? GO:0000166 ... A0R6S0 37435857
    731069 7wmz:B (1.916) BS01 NAI ? GO:0000166 ... A0R6S0 37435857
    731070 7wmz:C (1.916) BS01 NAI ? GO:0000166 ... A0R6S0 37435857
    731071 7wmz:D (1.916) BS01 NAI ? GO:0000166 ... A0R6S0 37435857
    731072 7wmz:E (1.916) BS01 NAI ? GO:0000166 ... A0R6S0 37435857
    731073 7wmz:F (1.916) BS01 NAI ? GO:0000166 ... A0R6S0 37435857
    731074 7wn1:A (3.11) BS01 NOS ? GO:0005337 ... Q8IDM6 36977719
    731075 7wn3:A (3.29) BS01 CA ? N/A P04275 35169124
    731076 7wn3:A (3.29) BS02 CA ? N/A P04275 35169124
    731077 7wn3:B (3.29) BS01 CA ? N/A P04275 35169124
    731078 7wn3:B (3.29) BS02 CA ? N/A P04275 35169124
    731079 7wn3:C (3.29) BS01 CA ? N/A P04275 35169124
    731080 7wn3:D (3.29) BS01 CA ? N/A P04275 35169124
    731081 7wn3:E (3.29) BS01 CA ? N/A P04275 35169124
    731082 7wn3:E (3.29) BS02 CA ? N/A P04275 35169124
    731083 7wn3:F (3.29) BS01 CA ? N/A P04275 35169124
    731084 7wn3:G (3.29) BS01 CA ? N/A P04275 35169124
    731085 7wn3:G (3.29) BS02 CA ? N/A P04275 35169124
    731086 7wn3:H (3.29) BS01 CA ? N/A P04275 35169124
    731087 7wn4:E (3.4) BS01 CA ? N/A P04275 35169124
    731088 7wn4:E (3.4) BS02 CA ? N/A P04275 35169124
    731089 7wn4:F (3.4) BS01 CA ? N/A P04275 35169124
    731090 7wn4:G (3.4) BS01 CA ? N/A P04275 35169124
    731091 7wn4:G (3.4) BS02 CA ? N/A P04275 35169124
    731092 7wn4:H (3.4) BS01 CA ? N/A P04275 35169124
    731093 7wn5:A (1.7) BS01 JGL ? N/A P25440 35333526
    731094 7wn5:B (1.7) BS01 JGL ? N/A P25440 35333526
    731095 7wn6:A (3.29) BS01 CA ? N/A P04275 35169124
    731096 7wn6:A (3.29) BS02 CA ? N/A P04275 35169124
    731097 7wn6:B (3.29) BS01 CA ? N/A P04275 35169124
    731098 7wn6:B (3.29) BS02 CA ? N/A P04275 35169124
    731099 7wn6:C (3.29) BS01 CA ? N/A P04275 35169124
    731100 7wn6:D (3.29) BS01 CA ? N/A P04275 35169124
    731101 7wn6:E (3.29) BS01 CA ? N/A P04275 35169124
    731102 7wn6:E (3.29) BS02 CA ? N/A P04275 35169124
    731103 7wn6:F (3.29) BS01 CA ? N/A P04275 35169124
    731104 7wn6:G (3.29) BS01 CA ? N/A P04275 35169124
    731105 7wn6:G (3.29) BS02 CA ? N/A P04275 35169124
    731106 7wn6:H (3.29) BS01 CA ? N/A P04275 35169124
    731107 7wn8:A (2.8) BS01 ZN ? GO:0005886 ... Q08722 36650558
    731108 7wn8:A (2.8) BS02 ZN ? GO:0005886 ... Q08722 36650558
    731109 7wn8:L (2.8) BS01 ZN N/A N/A N/A 36650558
    731110 7wna:A (2.6) BS01 JGR ? N/A P25440 35333526
    731111 7wna:B (2.6) BS01 JGR ? N/A P25440 35333526
    731112 7wna:C (2.6) BS01 JGR ? N/A P25440 35333526
    731113 7wna:D (2.6) BS01 JGR ? N/A P25440 35333526
    731114 7wna:E (2.6) BS01 JGR ? N/A P25440 35333526
    731115 7wna:F (2.6) BS01 JGR ? N/A P25440 35333526
    731116 7wnh:A (3.1) BS01 dna ? GO:0003677 ... P43354 36442107
    731117 7wnh:A (3.1) BS02 dna ? GO:0003677 ... P43354 36442107
    731118 7wnh:A (3.1) BS03 ZN ? GO:0003677 ... P43354 36442107
    731119 7wnh:A (3.1) BS04 ZN ? GO:0003677 ... P43354 36442107
    731120 7wnh:B (3.1) BS01 dna ? GO:0003677 ... P43354 36442107
    731121 7wnh:B (3.1) BS02 dna ? GO:0003677 ... P43354 36442107
    731122 7wnh:B (3.1) BS03 ZN ? GO:0003677 ... P43354 36442107
    731123 7wnh:B (3.1) BS04 ZN ? GO:0003677 ... P43354 36442107
    731124 7wnh:C (3.1) BS01 dna ? GO:0003677 ... P43354 36442107
    731125 7wnh:C (3.1) BS02 dna ? GO:0003677 ... P43354 36442107
    731126 7wnh:C (3.1) BS03 dna ? GO:0003677 ... P43354 36442107
    731127 7wnh:C (3.1) BS04 ZN ? GO:0003677 ... P43354 36442107
    731128 7wnh:C (3.1) BS05 ZN ? GO:0003677 ... P43354 36442107
    731129 7wnh:D (3.1) BS01 dna ? GO:0003677 ... P43354 36442107
    731130 7wnh:D (3.1) BS02 dna ? GO:0003677 ... P43354 36442107
    731131 7wnh:D (3.1) BS03 dna ? GO:0003677 ... P43354 36442107
    731132 7wnh:D (3.1) BS04 ZN ? GO:0003677 ... P43354 36442107
    731133 7wnh:D (3.1) BS05 ZN ? GO:0003677 ... P43354 36442107
    731134 7wni:A (3.12) BS01 JGU ? N/A P25440 35333526
    731135 7wni:B (3.12) BS01 JGU ? N/A P25440 35333526
    731136 7wnj:A (1.7) BS01 SAH 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... P29837 N/A
    731137 7wnk:A (1.4) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    731138 7wnk:B (1.4) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    731139 7wnk:C (1.4) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    731140 7wnk:D (1.4) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    731141 7wnl:A (1.51) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    731142 7wnl:B (1.51) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    731143 7wnl:C (1.51) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    731144 7wnl:D (1.51) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    731145 7wnl:D (1.51) BS02 AZI 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    731146 7wnm:B (2.7) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 35013100
    731147 7wnn:A (1.53) BS01 NAP N/A GO:0016491 ... N/A 35322515
    731148 7wnn:A (1.53) BS02 NAP N/A GO:0016491 ... N/A 35322515
    731149 7wnn:B (1.53) BS01 NAP N/A GO:0016491 ... N/A 35322515
    731150 7wnn:B (1.53) BS02 NAP N/A GO:0016491 ... N/A 35322515
    731151 7wno:X (1.72) BS01 CU 1.4.3.21 GO:0005507 ... P46881 35546796
    731152 7wnp:X (1.72) BS01 CU 1.4.3.21 GO:0005507 ... P46881 35546796
    731153 7wnr:B (-1.00) BS01 dna ? GO:0006355 ... P9WJ87 36109664
    731154 7wnr:B (-1.00) BS02 dna ? GO:0006355 ... P9WJ87 36109664
    731155 7wnr:C (-1.00) BS01 dna ? GO:0006355 ... P9WJ87 36109664
    731156 7wnr:C (-1.00) BS02 dna ? GO:0006355 ... P9WJ87 36109664
    731157 7wnt:A (2.44) BS01 ZN 3.1.-.-
    3.5.2.6
    GO:0003723 ... P9WGZ9 N/A
    731158 7wnt:A (2.44) BS02 ZN 3.1.-.-
    3.5.2.6
    GO:0003723 ... P9WGZ9 N/A
    731159 7wnu:A (3.2) BS01 rna 3.1.-.-
    3.5.2.6
    GO:0003723 ... P9WGZ9 N/A
    731160 7wnu:A (3.2) BS02 ZN 3.1.-.-
    3.5.2.6
    GO:0003723 ... P9WGZ9 N/A
    731161 7wnu:A (3.2) BS03 ZN 3.1.-.-
    3.5.2.6
    GO:0003723 ... P9WGZ9 N/A
    731162 7wnu:B (3.2) BS01 rna 3.1.-.-
    3.5.2.6
    GO:0003723 ... P9WGZ9 N/A
    731163 7wnu:B (3.2) BS02 ZN 3.1.-.-
    3.5.2.6
    GO:0003723 ... P9WGZ9 N/A
    731164 7wnu:B (3.2) BS03 ZN 3.1.-.-
    3.5.2.6
    GO:0003723 ... P9WGZ9 N/A
    731165 7wnv:A (2.3) BS01 2I9 ? N/A P03372 37871388
    731166 7wnv:B (2.3) BS01 2I9 ? N/A P03372 37871388
    731167 7wnv:C (2.3) BS01 2I9 ? N/A P03372 37871388
    731168 7wnv:D (2.3) BS01 2I9 ? N/A P03372 37871388
    731169 7wnw:A (2.13) BS01 NAP N/A GO:0016491 ... N/A 35322515
    731170 7wnw:A (2.13) BS02 NAP N/A GO:0016491 ... N/A 35322515
    731171 7wnw:B (2.13) BS01 NAP N/A GO:0016491 ... N/A 35322515
    731172 7wnx:A (3.36) BS01 1I2 ? GO:0005515 ... A0QP27 35981536
    731173 7wo1:A (2.15) BS01 3XI 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 35216507
    731174 7wo2:A (1.96) BS01 40I 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 35216507
    731175 7wo3:A (2.01) BS01 59S 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 35216507
    731176 7wof:A (1.72) BS01 5IZ 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 35216507
    731177 7woh:A (1.72) BS01 5IW 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 35216507
    731178 7woh:B (1.72) BS01 5IW 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 35216507
    731179 7woj:A (2.89) BS01 CPT ? GO:0005615 ... P02768 35788007
    731180 7woj:A (2.89) BS02 CPT ? GO:0005615 ... P02768 35788007
    731181 7woj:A (2.89) BS03 CPT ? GO:0005615 ... P02768 35788007
    731182 7woj:A (2.89) BS04 CPT ? GO:0005615 ... P02768 35788007
    731183 7wok:A (2.9) BS01 CPT ? GO:0005615 ... P02768 35788007
    731184 7wok:B (2.9) BS01 CPT ? GO:0005615 ... P02768 35788007
    731185 7wok:B (2.9) BS02 CPT ? GO:0005615 ... P02768 35788007
    731186 7wom:A (0.9) BS01 EPA ? GO:0005515 ... P05413 N/A
    731187 7wox:A (3.2) BS01 5YW ? GO:0003677 ... P37231 35301139
    731188 7wp3:A (2.954) BS01 PNT ? GO:0003677 ... B5TV91 N/A
    731189 7wpb:D (2.79) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 35133176
    731190 7wpc:D (2.57) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 35133176
    731191 7wpg:A (0.9) BS01 DKL ? GO:0005515 ... P05413 N/A
    731192 7wpi:A (1.92) BS01 1V7 6.1.1.10 GO:0000166 ... Q5HII6 35474479
    731193 7wpk:A (2.8) BS01 MET 6.1.1.10 GO:0000166 ... Q5HII6 35474479
    731194 7wpl:A (2.5) BS01 ATP 6.1.1.10 GO:0000166 ... Q5HII6 35474479
    731195 7wpm:A (2.8) BS01 ATP 6.1.1.10 GO:0000166 ... Q5HII6 35474479
    731196 7wpm:A (2.8) BS02 2AQ 6.1.1.10 GO:0000166 ... Q5HII6 35474479
    731197 7wpn:A (2.4) BS01 ATP 6.1.1.10 GO:0000166 ... Q5HII6 35474479
    731198 7wpn:A (2.4) BS02 29I 6.1.1.10 GO:0000166 ... Q5HII6 35474479
    731199 7wpp:E (2.85) BS01 CA ? N/A P04275 35148377
    731200 7wpp:E (2.85) BS02 CA ? N/A P04275 35148377

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).