SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    731801 7wts:N (3.2) BS01 rna ? GO:0002181 ... P62277 36321656
    731802 7wts:O (3.2) BS01 rna ? GO:0000028 ... P62263 36321656
    731803 7wts:W (3.2) BS01 rna ? GO:0002181 ... P62244 36321656
    731804 7wts:X (3.2) BS01 rna ? GO:0002181 ... P62266 36321656
    731805 7wts:Y (3.2) BS01 rna ? GO:0002181 ... P62847 36321656
    731806 7wts:b (3.2) BS01 rna ? GO:0000028 ... P42677 36321656
    731807 7wts:q (3.2) BS01 rna 2.1.1.- GO:0003723 ... O43709 36321656
    731808 7wts:u (3.2) BS01 rna ? GO:0000462 ... Q2NL82 36321656
    731809 7wts:x (3.2) BS01 rna ? GO:0003676 ... Q9NRX1 36321656
    731810 7wts:z (3.2) BS01 rna ? GO:0000462 ... Q9NSI2 36321656
    731811 7wtt:B (3.1) BS01 rna ? GO:0002181 ... P61247 36321656
    731812 7wtt:E (3.1) BS01 rna ? GO:0002181 ... P62701 36321656
    731813 7wtt:F (3.1) BS01 rna ? GO:0000028 ... P46782 36321656
    731814 7wtt:G (3.1) BS01 rna ? GO:0000082 ... P62753 36321656
    731815 7wtt:H (3.1) BS01 rna ? GO:0001843 ... P62081 36321656
    731816 7wtt:I (3.1) BS01 rna ? GO:0000462 ... P62241 36321656
    731817 7wtt:J (3.1) BS01 rna ? GO:0002181 ... P46781 36321656
    731818 7wtt:J (3.1) BS02 peptide ? GO:0002181 ... P46781 36321656
    731819 7wtt:K (3.1) BS01 rna ? GO:0003723 ... Q5JTH9 36321656
    731820 7wtt:L (3.1) BS01 rna ? GO:0002181 ... P62280 36321656
    731821 7wtt:M (3.1) BS01 rna ? GO:0002181 ... P25398 36321656
    731822 7wtt:N (3.1) BS01 rna ? GO:0002181 ... P62277 36321656
    731823 7wtt:O (3.1) BS01 rna ? GO:0000028 ... P62263 36321656
    731824 7wtt:P (3.1) BS01 rna ? GO:0000028 ... P62841 36321656
    731825 7wtt:Q (3.1) BS01 rna ? GO:0000462 ... P62249 36321656
    731826 7wtt:R (3.1) BS01 rna ? GO:0002181 ... P08708 36321656
    731827 7wtt:S (3.1) BS01 rna ? GO:0002181 ... P62269 36321656
    731828 7wtt:T (3.1) BS01 rna ? GO:0000028 ... P39019 36321656
    731829 7wtt:W (3.1) BS01 rna ? GO:0002181 ... P62244 36321656
    731830 7wtt:X (3.1) BS01 rna ? GO:0002181 ... P62266 36321656
    731831 7wtt:Y (3.1) BS01 rna ? GO:0002181 ... P62847 36321656
    731832 7wtt:Z (3.1) BS01 rna ? GO:0002181 ... P62851 36321656
    731833 7wtt:b (3.1) BS01 rna ? GO:0000028 ... P42677 36321656
    731834 7wtt:c (3.1) BS01 rna ? GO:0000028 ... P62857 36321656
    731835 7wtt:f (3.1) BS01 rna ? GO:0002181 ... P62979 36321656
    731836 7wtt:f (3.1) BS02 ZN ? GO:0002181 ... P62979 36321656
    731837 7wtt:q (3.1) BS01 rna 2.1.1.- GO:0003723 ... O43709 36321656
    731838 7wtt:q (3.1) BS02 SAH 2.1.1.- GO:0003723 ... O43709 36321656
    731839 7wtt:u (3.1) BS01 rna ? GO:0000462 ... Q2NL82 36321656
    731840 7wtt:w (3.1) BS01 rna ? GO:0000462 ... Q13895 36321656
    731841 7wtt:x (3.1) BS01 rna ? GO:0003676 ... Q9NRX1 36321656
    731842 7wtt:z (3.1) BS01 rna ? GO:0000462 ... Q9NSI2 36321656
    731843 7wtu:B (3.0) BS01 rna ? GO:0002181 ... P61247 36321656
    731844 7wtu:E (3.0) BS01 rna ? GO:0002181 ... P62701 36321656
    731845 7wtu:F (3.0) BS01 rna ? GO:0000028 ... P46782 36321656
    731846 7wtu:G (3.0) BS01 rna ? GO:0000082 ... P62753 36321656
    731847 7wtu:H (3.0) BS01 rna ? GO:0001843 ... P62081 36321656
    731848 7wtu:I (3.0) BS01 rna ? GO:0000462 ... P62241 36321656
    731849 7wtu:J (3.0) BS01 rna ? GO:0002181 ... P46781 36321656
    731850 7wtu:J (3.0) BS02 peptide ? GO:0002181 ... P46781 36321656
    731851 7wtu:K (3.0) BS01 rna ? GO:0003723 ... Q5JTH9 36321656
    731852 7wtu:L (3.0) BS01 rna ? GO:0002181 ... P62280 36321656
    731853 7wtu:M (3.0) BS01 rna ? GO:0002181 ... P25398 36321656
    731854 7wtu:N (3.0) BS01 rna ? GO:0002181 ... P62277 36321656
    731855 7wtu:O (3.0) BS01 rna ? GO:0000028 ... P62263 36321656
    731856 7wtu:P (3.0) BS01 rna ? GO:0000028 ... P62841 36321656
    731857 7wtu:Q (3.0) BS01 rna ? GO:0000462 ... P62249 36321656
    731858 7wtu:R (3.0) BS01 rna ? GO:0002181 ... P08708 36321656
    731859 7wtu:S (3.0) BS01 rna ? GO:0002181 ... P62269 36321656
    731860 7wtu:T (3.0) BS01 rna ? GO:0000028 ... P39019 36321656
    731861 7wtu:W (3.0) BS01 rna ? GO:0002181 ... P62244 36321656
    731862 7wtu:X (3.0) BS01 rna ? GO:0002181 ... P62266 36321656
    731863 7wtu:Y (3.0) BS01 rna ? GO:0002181 ... P62847 36321656
    731864 7wtu:Z (3.0) BS01 rna ? GO:0002181 ... P62851 36321656
    731865 7wtu:b (3.0) BS01 rna ? GO:0000028 ... P42677 36321656
    731866 7wtu:c (3.0) BS01 rna ? GO:0000028 ... P62857 36321656
    731867 7wtu:f (3.0) BS01 rna ? GO:0002181 ... P62979 36321656
    731868 7wtu:f (3.0) BS02 ZN ? GO:0002181 ... P62979 36321656
    731869 7wtu:q (3.0) BS01 rna 2.1.1.- GO:0003723 ... O43709 36321656
    731870 7wtu:q (3.0) BS02 SAH 2.1.1.- GO:0003723 ... O43709 36321656
    731871 7wtu:u (3.0) BS01 rna ? GO:0000462 ... Q2NL82 36321656
    731872 7wtu:w (3.0) BS01 rna ? GO:0000462 ... Q13895 36321656
    731873 7wtu:x (3.0) BS01 rna ? GO:0003676 ... Q9NRX1 36321656
    731874 7wtu:z (3.0) BS01 rna ? GO:0000462 ... Q9NSI2 36321656
    731875 7wtv:B (3.5) BS01 rna ? GO:0002181 ... P61247 36321656
    731876 7wtv:C (3.5) BS01 rna ? GO:0002181 ... P15880 36321656
    731877 7wtv:E (3.5) BS01 rna ? GO:0002181 ... P62701 36321656
    731878 7wtv:F (3.5) BS01 rna ? GO:0000028 ... P46782 36321656
    731879 7wtv:G (3.5) BS01 rna ? GO:0000082 ... P62753 36321656
    731880 7wtv:H (3.5) BS01 rna ? GO:0001843 ... P62081 36321656
    731881 7wtv:I (3.5) BS01 rna ? GO:0000462 ... P62241 36321656
    731882 7wtv:J (3.5) BS01 rna ? GO:0002181 ... P46781 36321656
    731883 7wtv:J (3.5) BS02 peptide ? GO:0002181 ... P46781 36321656
    731884 7wtv:K (3.5) BS01 rna ? GO:0003723 ... Q5JTH9 36321656
    731885 7wtv:L (3.5) BS01 rna ? GO:0002181 ... P62280 36321656
    731886 7wtv:M (3.5) BS01 rna ? GO:0002181 ... P25398 36321656
    731887 7wtv:N (3.5) BS01 rna ? GO:0002181 ... P62277 36321656
    731888 7wtv:O (3.5) BS01 rna ? GO:0000028 ... P62263 36321656
    731889 7wtv:P (3.5) BS01 rna ? GO:0000028 ... P62841 36321656
    731890 7wtv:Q (3.5) BS01 rna ? GO:0000462 ... P62249 36321656
    731891 7wtv:R (3.5) BS01 rna ? GO:0002181 ... P08708 36321656
    731892 7wtv:S (3.5) BS01 rna ? GO:0002181 ... P62269 36321656
    731893 7wtv:T (3.5) BS01 rna ? GO:0000028 ... P39019 36321656
    731894 7wtv:W (3.5) BS01 rna ? GO:0002181 ... P62244 36321656
    731895 7wtv:X (3.5) BS01 rna ? GO:0002181 ... P62266 36321656
    731896 7wtv:Y (3.5) BS01 rna ? GO:0002181 ... P62847 36321656
    731897 7wtv:Z (3.5) BS01 rna ? GO:0002181 ... P62851 36321656
    731898 7wtv:b (3.5) BS01 rna ? GO:0000028 ... P42677 36321656
    731899 7wtv:c (3.5) BS01 rna ? GO:0000028 ... P62857 36321656
    731900 7wtv:f (3.5) BS01 rna ? GO:0002181 ... P62979 36321656
    731901 7wtv:q (3.5) BS01 rna 2.1.1.- GO:0003723 ... O43709 36321656
    731902 7wtv:q (3.5) BS02 SAH 2.1.1.- GO:0003723 ... O43709 36321656
    731903 7wtv:u (3.5) BS01 rna ? GO:0000462 ... Q2NL82 36321656
    731904 7wtv:w (3.5) BS01 rna ? GO:0000462 ... Q13895 36321656
    731905 7wtv:x (3.5) BS01 rna ? GO:0003676 ... Q9NRX1 36321656
    731906 7wtw:A (3.2) BS01 rna ? GO:0000028 ... P08865 36321656
    731907 7wtw:B (3.2) BS01 rna ? GO:0002181 ... P61247 36321656
    731908 7wtw:C (3.2) BS01 rna ? GO:0002181 ... P15880 36321656
    731909 7wtw:E (3.2) BS01 rna ? GO:0002181 ... P62701 36321656
    731910 7wtw:F (3.2) BS01 rna ? GO:0000028 ... P46782 36321656
    731911 7wtw:G (3.2) BS01 rna ? GO:0000082 ... P62753 36321656
    731912 7wtw:H (3.2) BS01 rna ? GO:0001843 ... P62081 36321656
    731913 7wtw:I (3.2) BS01 rna ? GO:0000462 ... P62241 36321656
    731914 7wtw:J (3.2) BS01 rna ? GO:0002181 ... P46781 36321656
    731915 7wtw:J (3.2) BS02 peptide ? GO:0002181 ... P46781 36321656
    731916 7wtw:K (3.2) BS01 rna ? GO:0003723 ... Q5JTH9 36321656
    731917 7wtw:L (3.2) BS01 rna ? GO:0002181 ... P62280 36321656
    731918 7wtw:M (3.2) BS01 rna ? GO:0002181 ... P25398 36321656
    731919 7wtw:N (3.2) BS01 rna ? GO:0002181 ... P62277 36321656
    731920 7wtw:O (3.2) BS01 rna ? GO:0000028 ... P62263 36321656
    731921 7wtw:P (3.2) BS01 rna ? GO:0000028 ... P62841 36321656
    731922 7wtw:Q (3.2) BS01 rna ? GO:0000462 ... P62249 36321656
    731923 7wtw:R (3.2) BS01 rna ? GO:0002181 ... P08708 36321656
    731924 7wtw:S (3.2) BS01 rna ? GO:0002181 ... P62269 36321656
    731925 7wtw:T (3.2) BS01 rna ? GO:0000028 ... P39019 36321656
    731926 7wtw:V (3.2) BS01 rna ? GO:0000447 ... P63220 36321656
    731927 7wtw:W (3.2) BS01 rna ? GO:0002181 ... P62244 36321656
    731928 7wtw:X (3.2) BS01 rna ? GO:0002181 ... P62266 36321656
    731929 7wtw:Y (3.2) BS01 rna ? GO:0002181 ... P62847 36321656
    731930 7wtw:Z (3.2) BS01 rna ? GO:0002181 ... P62851 36321656
    731931 7wtw:b (3.2) BS01 rna ? GO:0000028 ... P42677 36321656
    731932 7wtw:c (3.2) BS01 rna ? GO:0000028 ... P62857 36321656
    731933 7wtw:f (3.2) BS01 rna ? GO:0002181 ... P62979 36321656
    731934 7wtw:f (3.2) BS02 ZN ? GO:0002181 ... P62979 36321656
    731935 7wtw:q (3.2) BS01 rna 2.1.1.- GO:0008757 ... O43709 36321656
    731936 7wtw:t (3.2) BS01 rna ? GO:0000056 ... Q96GA3 36321656
    731937 7wtw:u (3.2) BS01 rna ? GO:0000462 ... Q2NL82 36321656
    731938 7wtw:w (3.2) BS01 rna ? GO:0000462 ... Q13895 36321656
    731939 7wtw:x (3.2) BS01 rna ? GO:0003676 ... Q9NRX1 36321656
    731940 7wtw:y (3.2) BS01 rna 3.1.-.- GO:0004519 ... Q9ULX3 36321656
    731941 7wtw:y (3.2) BS02 ZN 3.1.-.- GO:0004519 ... Q9ULX3 36321656
    731942 7wtw:z (3.2) BS01 rna ? GO:0000462 ... Q9NSI2 36321656
    731943 7wtx:A (3.1) BS01 rna ? GO:0000028 ... P08865 36321656
    731944 7wtx:B (3.1) BS01 rna ? GO:0002181 ... P61247 36321656
    731945 7wtx:C (3.1) BS01 rna ? GO:0002181 ... P15880 36321656
    731946 7wtx:E (3.1) BS01 rna ? GO:0002181 ... P62701 36321656
    731947 7wtx:F (3.1) BS01 rna ? GO:0000028 ... P46782 36321656
    731948 7wtx:G (3.1) BS01 rna ? GO:0000082 ... P62753 36321656
    731949 7wtx:H (3.1) BS01 rna ? GO:0001843 ... P62081 36321656
    731950 7wtx:I (3.1) BS01 rna ? GO:0000462 ... P62241 36321656
    731951 7wtx:J (3.1) BS01 rna ? GO:0002181 ... P46781 36321656
    731952 7wtx:K (3.1) BS01 rna ? GO:0003723 ... Q5JTH9 36321656
    731953 7wtx:L (3.1) BS01 rna ? GO:0002181 ... P62280 36321656
    731954 7wtx:M (3.1) BS01 rna ? GO:0002181 ... P25398 36321656
    731955 7wtx:N (3.1) BS01 rna ? GO:0002181 ... P62277 36321656
    731956 7wtx:O (3.1) BS01 rna ? GO:0000028 ... P62263 36321656
    731957 7wtx:P (3.1) BS01 rna ? GO:0000028 ... P62841 36321656
    731958 7wtx:Q (3.1) BS01 rna ? GO:0000462 ... P62249 36321656
    731959 7wtx:R (3.1) BS01 rna ? GO:0002181 ... P08708 36321656
    731960 7wtx:S (3.1) BS01 rna ? GO:0002181 ... P62269 36321656
    731961 7wtx:T (3.1) BS01 rna ? GO:0000028 ... P39019 36321656
    731962 7wtx:W (3.1) BS01 rna ? GO:0002181 ... P62244 36321656
    731963 7wtx:X (3.1) BS01 rna ? GO:0002181 ... P62266 36321656
    731964 7wtx:Y (3.1) BS01 rna ? GO:0002181 ... P62847 36321656
    731965 7wtx:Z (3.1) BS01 rna ? GO:0002181 ... P62851 36321656
    731966 7wtx:b (3.1) BS01 rna ? GO:0000028 ... P42677 36321656
    731967 7wtx:c (3.1) BS01 rna ? GO:0000028 ... P62857 36321656
    731968 7wtx:e (3.1) BS01 rna ? GO:0003735 ... P62861 36321656
    731969 7wtx:f (3.1) BS01 rna ? GO:0002181 ... P62979 36321656
    731970 7wtx:t (3.1) BS01 rna ? GO:0000056 ... Q96GA3 36321656
    731971 7wtx:u (3.1) BS01 rna ? GO:0000462 ... Q2NL82 36321656
    731972 7wtx:w (3.1) BS01 rna ? GO:0000462 ... Q13895 36321656
    731973 7wtx:x (3.1) BS01 rna ? GO:0003676 ... Q9NRX1 36321656
    731974 7wtx:y (3.1) BS01 rna 3.1.-.- GO:0004519 ... Q9ULX3 36321656
    731975 7wtx:y (3.1) BS02 ZN 3.1.-.- GO:0004519 ... Q9ULX3 36321656
    731976 7wtz:A (3.0) BS01 rna ? GO:0000028 ... P08865 36321656
    731977 7wtz:B (3.0) BS01 rna ? GO:0002181 ... P61247 36321656
    731978 7wtz:C (3.0) BS01 rna ? GO:0002181 ... P15880 36321656
    731979 7wtz:E (3.0) BS01 rna ? GO:0002181 ... P62701 36321656
    731980 7wtz:F (3.0) BS01 rna ? GO:0000028 ... P46782 36321656
    731981 7wtz:G (3.0) BS01 rna ? GO:0000082 ... P62753 36321656
    731982 7wtz:H (3.0) BS01 rna ? GO:0001843 ... P62081 36321656
    731983 7wtz:I (3.0) BS01 rna ? GO:0000462 ... P62241 36321656
    731984 7wtz:J (3.0) BS01 rna ? GO:0002181 ... P46781 36321656
    731985 7wtz:K (3.0) BS01 rna ? GO:0003723 ... Q5JTH9 36321656
    731986 7wtz:L (3.0) BS01 rna ? GO:0002181 ... P62280 36321656
    731987 7wtz:M (3.0) BS01 rna ? GO:0002181 ... P25398 36321656
    731988 7wtz:N (3.0) BS01 rna ? GO:0002181 ... P62277 36321656
    731989 7wtz:O (3.0) BS01 rna ? GO:0000028 ... P62263 36321656
    731990 7wtz:P (3.0) BS01 rna ? GO:0000028 ... P62841 36321656
    731991 7wtz:Q (3.0) BS01 rna ? GO:0000462 ... P62249 36321656
    731992 7wtz:R (3.0) BS01 rna ? GO:0002181 ... P08708 36321656
    731993 7wtz:S (3.0) BS01 rna ? GO:0002181 ... P62269 36321656
    731994 7wtz:T (3.0) BS01 rna ? GO:0000028 ... P39019 36321656
    731995 7wtz:V (3.0) BS01 rna ? GO:0000447 ... P63220 36321656
    731996 7wtz:W (3.0) BS01 rna ? GO:0002181 ... P62244 36321656
    731997 7wtz:X (3.0) BS01 rna ? GO:0002181 ... P62266 36321656
    731998 7wtz:Y (3.0) BS01 rna ? GO:0002181 ... P62847 36321656
    731999 7wtz:Z (3.0) BS01 rna ? GO:0002181 ... P62851 36321656
    732000 7wtz:b (3.0) BS01 rna ? GO:0000028 ... P42677 36321656

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).