SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    732001 7wtz:c (3.0) BS01 rna ? GO:0000028 ... P62857 36321656
    732002 7wtz:e (3.0) BS01 rna ? GO:0003735 ... P62861 36321656
    732003 7wtz:f (3.0) BS01 rna ? GO:0002181 ... P62979 36321656
    732004 7wtz:f (3.0) BS02 ZN ? GO:0002181 ... P62979 36321656
    732005 7wtz:t (3.0) BS01 rna ? GO:0000056 ... Q96GA3 36321656
    732006 7wtz:u (3.0) BS01 rna ? GO:0000462 ... Q2NL82 36321656
    732007 7wtz:w (3.0) BS01 rna ? GO:0000462 ... Q13895 36321656
    732008 7wtz:x (3.0) BS01 rna ? GO:0003676 ... Q9NRX1 36321656
    732009 7wtz:y (3.0) BS01 rna 3.1.-.- GO:0004519 ... Q9ULX3 36321656
    732010 7wtz:y (3.0) BS02 ZN 3.1.-.- GO:0004519 ... Q9ULX3 36321656
    732011 7wu0:A (3.3) BS01 rna ? GO:0000028 ... P08865 36321656
    732012 7wu0:B (3.3) BS01 rna ? GO:0002181 ... P61247 36321656
    732013 7wu0:C (3.3) BS01 rna ? GO:0002181 ... P15880 36321656
    732014 7wu0:E (3.3) BS01 rna ? GO:0002181 ... P62701 36321656
    732015 7wu0:F (3.3) BS01 rna ? GO:0000028 ... P46782 36321656
    732016 7wu0:G (3.3) BS01 rna ? GO:0000082 ... P62753 36321656
    732017 7wu0:H (3.3) BS01 rna ? GO:0001843 ... P62081 36321656
    732018 7wu0:I (3.3) BS01 rna ? GO:0000462 ... P62241 36321656
    732019 7wu0:J (3.3) BS01 rna ? GO:0002181 ... P46781 36321656
    732020 7wu0:K (3.3) BS01 rna ? GO:0003723 ... Q5JTH9 36321656
    732021 7wu0:L (3.3) BS01 rna ? GO:0002181 ... P62280 36321656
    732022 7wu0:M (3.3) BS01 rna ? GO:0002181 ... P25398 36321656
    732023 7wu0:N (3.3) BS01 rna ? GO:0002181 ... P62277 36321656
    732024 7wu0:O (3.3) BS01 rna ? GO:0000028 ... P62263 36321656
    732025 7wu0:P (3.3) BS01 rna ? GO:0000028 ... P62841 36321656
    732026 7wu0:Q (3.3) BS01 rna ? GO:0000462 ... P62249 36321656
    732027 7wu0:R (3.3) BS01 rna ? GO:0002181 ... P08708 36321656
    732028 7wu0:S (3.3) BS01 rna ? GO:0002181 ... P62269 36321656
    732029 7wu0:T (3.3) BS01 rna ? GO:0000028 ... P39019 36321656
    732030 7wu0:W (3.3) BS01 rna ? GO:0002181 ... P62244 36321656
    732031 7wu0:X (3.3) BS01 rna ? GO:0002181 ... P62266 36321656
    732032 7wu0:Y (3.3) BS01 rna ? GO:0002181 ... P62847 36321656
    732033 7wu0:Z (3.3) BS01 rna ? GO:0002181 ... P62851 36321656
    732034 7wu0:b (3.3) BS01 rna ? GO:0000028 ... P42677 36321656
    732035 7wu0:c (3.3) BS01 rna ? GO:0000028 ... P62857 36321656
    732036 7wu0:e (3.3) BS01 rna ? GO:0003735 ... P62861 36321656
    732037 7wu0:f (3.3) BS01 rna ? GO:0002181 ... P62979 36321656
    732038 7wu0:f (3.3) BS02 ZN ? GO:0002181 ... P62979 36321656
    732039 7wu0:t (3.3) BS01 rna ? GO:0000056 ... Q96GA3 36321656
    732040 7wu0:u (3.3) BS01 rna ? GO:0000462 ... Q2NL82 36321656
    732041 7wu0:v (3.3) BS01 rna 2.7.11.1 GO:0003824 ... Q9BVS4 36321656
    732042 7wu0:w (3.3) BS01 rna ? GO:0000462 ... Q13895 36321656
    732043 7wu0:x (3.3) BS01 rna ? GO:0003676 ... Q9NRX1 36321656
    732044 7wu0:y (3.3) BS01 rna 3.1.-.- GO:0004519 ... Q9ULX3 36321656
    732045 7wu0:y (3.3) BS02 ZN 3.1.-.- GO:0004519 ... Q9ULX3 36321656
    732046 7wu3:R (3.1) BS01 K6G ? GO:0004888 ... Q5T601 35418679
    732047 7wu4:R (3.4) BS01 CLR ? GO:0004888 ... Q5T601 35418679
    732048 7wu4:R (3.4) BS02 K6G ? GO:0004888 ... Q5T601 35418679
    732049 7wu5:R (3.0) BS01 CLR ? GO:0004888 ... Q5T601 35418679
    732050 7wu5:R (3.0) BS02 K6G ? GO:0004888 ... Q5T601 35418679
    732051 7wu7:F (3.85) BS01 ADP ? GO:0003723 ... P40227 36493755
    732052 7wu7:H (3.85) BS01 ADP ? GO:0002199 ... P50990 36493755
    732053 7wu7:N (3.85) BS01 ADP ? GO:0003723 ... P40227 36493755
    732054 7wu7:P (3.85) BS01 ADP ? GO:0002199 ... P50990 36493755
    732055 7wua:A (1.999) BS01 ANP ? GO:0005886 ... Q6NES7 N/A
    732056 7wua:B (1.999) BS01 ANP ? GO:0005886 ... Q6NES7 N/A
    732057 7wua:C (1.999) BS01 ANP ? GO:0005886 ... Q6NES7 N/A
    732058 7wua:D (1.999) BS01 ANP ? GO:0005886 ... Q6NES7 N/A
    732059 7wub:A (3.0) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    732060 7wub:A (3.0) BS02 Y6Y 3.6.4.6 GO:0000502 ... P55072 N/A
    732061 7wub:A (3.0) BS03 Y6Y 3.6.4.6 GO:0000502 ... P55072 N/A
    732062 7wub:B (3.0) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    732063 7wub:B (3.0) BS02 Y6Y 3.6.4.6 GO:0000502 ... P55072 N/A
    732064 7wub:C (3.0) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 N/A
    732065 7wub:C (3.0) BS02 Y6Y 3.6.4.6 GO:0005524 ... P55072 N/A
    732066 7wub:D (3.0) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 N/A
    732067 7wub:D (3.0) BS02 Y6Y 3.6.4.6 GO:0005524 ... P55072 N/A
    732068 7wub:E (3.0) BS01 Y6Y 3.6.4.6 GO:0000502 ... P55072 N/A
    732069 7wub:E (3.0) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    732070 7wub:E (3.0) BS03 Y6Y 3.6.4.6 GO:0000502 ... P55072 N/A
    732071 7wub:F (3.0) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    732072 7wub:F (3.0) BS02 Y6Y 3.6.4.6 GO:0000502 ... P55072 N/A
    732073 7wub:G (3.0) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    732074 7wub:G (3.0) BS02 Y6Y 3.6.4.6 GO:0000502 ... P55072 N/A
    732075 7wub:H (3.0) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    732076 7wub:H (3.0) BS02 Y6Y 3.6.4.6 GO:0000502 ... P55072 N/A
    732077 7wub:I (3.0) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    732078 7wub:I (3.0) BS02 Y6Y 3.6.4.6 GO:0000502 ... P55072 N/A
    732079 7wub:J (3.0) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    732080 7wub:J (3.0) BS02 Y6Y 3.6.4.6 GO:0000502 ... P55072 N/A
    732081 7wub:K (3.0) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    732082 7wub:K (3.0) BS02 Y6Y 3.6.4.6 GO:0000502 ... P55072 N/A
    732083 7wub:L (3.0) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    732084 7wub:L (3.0) BS02 Y6Y 3.6.4.6 GO:0000502 ... P55072 N/A
    732085 7wud:A (1.9) BS01 PLP 2.6.1.21 GO:0003824 ... A0A8M0FGQ9 N/A
    732086 7wud:B (1.9) BS01 PLP 2.6.1.21 GO:0003824 ... A0A8M0FGQ9 N/A
    732087 7wud:C (1.9) BS01 PLP 2.6.1.21 GO:0003824 ... A0A8M0FGQ9 N/A
    732088 7wud:D (1.9) BS01 PLP 2.6.1.21 GO:0003824 ... A0A8M0FGQ9 N/A
    732089 7wuh:A (4.7) BS01 FUC ? GO:0005515 ... P0DTC2 35230146
    732090 7wuh:E (4.7) BS01 MAN ? GO:0005515 ... P0DTC2 35230146
    732091 7wui:R (3.1) BS01 peptide ? GO:0004888 ... Q8CJ12 35418677
    732092 7wuk:A (1.63) BS01 ZN 2.3.2.27 GO:0008270 ... A0A0P0UY23 N/A
    732093 7wuk:A (1.63) BS02 ZN 2.3.2.27 GO:0008270 ... A0A0P0UY23 N/A
    732094 7wuk:A (1.63) BS03 ZN 2.3.2.27 GO:0008270 ... A0A0P0UY23 N/A
    732095 7wul:A (1.58) BS01 peptide 2.3.2.27 GO:0008270 ... A0A0P0UY23 N/A
    732096 7wul:A (1.58) BS02 ZN 2.3.2.27 GO:0008270 ... A0A0P0UY23 N/A
    732097 7wul:A (1.58) BS03 ZN 2.3.2.27 GO:0008270 ... A0A0P0UY23 N/A
    732098 7wul:A (1.58) BS04 ZN 2.3.2.27 GO:0008270 ... A0A0P0UY23 N/A
    732099 7wum:A (1.58) BS01 peptide 2.3.2.27 GO:0008270 ... A0A0P0UY23 N/A
    732100 7wum:A (1.58) BS02 ZN 2.3.2.27 GO:0008270 ... A0A0P0UY23 N/A
    732101 7wum:A (1.58) BS03 ZN 2.3.2.27 GO:0008270 ... A0A0P0UY23 N/A
    732102 7wum:A (1.58) BS04 ZN 2.3.2.27 GO:0008270 ... A0A0P0UY23 N/A
    732103 7wun:A (1.53) BS01 peptide 2.3.2.27 GO:0008270 ... A0A0P0UY23 N/A
    732104 7wun:A (1.53) BS02 ZN 2.3.2.27 GO:0008270 ... A0A0P0UY23 N/A
    732105 7wun:A (1.53) BS03 ZN 2.3.2.27 GO:0008270 ... A0A0P0UY23 N/A
    732106 7wun:A (1.53) BS04 ZN 2.3.2.27 GO:0008270 ... A0A0P0UY23 N/A
    732107 7wux:C (1.8) BS01 6OI ? N/A B4XYC1 35998388
    732108 7wux:D (1.8) BS01 6OI ? N/A B4XYC1 35998388
    732109 7wuy:A (1.84) BS01 SAM ? GO:0008168 ... A0A1R3S1W7 N/A
    732110 7wuy:A (1.84) BS02 76N ? GO:0008168 ... A0A1R3S1W7 N/A
    732111 7wuy:B (1.84) BS01 SAM ? GO:0008168 ... A0A1R3S1W7 N/A
    732112 7wuz:A (1.93) BS01 CNC 1.16.1.6
    2.5.1.151
    N/A Q9Y4U1 N/A
    732113 7wv3:A (2.26) BS01 rna ? GO:0000139 ... O15455 36371424
    732114 7wv3:A (2.26) BS02 rna ? GO:0000139 ... O15455 36371424
    732115 7wv3:B (2.26) BS01 rna ? GO:0000139 ... O15455 36371424
    732116 7wv3:B (2.26) BS02 rna ? GO:0000139 ... O15455 36371424
    732117 7wv3:C (2.26) BS01 rna ? GO:0000139 ... O15455 36371424
    732118 7wv3:C (2.26) BS02 rna ? GO:0000139 ... O15455 36371424
    732119 7wv3:D (2.26) BS01 rna ? GO:0000139 ... O15455 36371424
    732120 7wv3:D (2.26) BS02 rna ? GO:0000139 ... O15455 36371424
    732121 7wv4:A (3.35) BS01 rna ? N/A O15455 36371424
    732122 7wv4:A (3.35) BS02 rna ? N/A O15455 36371424
    732123 7wv4:B (3.35) BS01 rna ? N/A O15455 36371424
    732124 7wv4:B (3.35) BS02 rna ? N/A O15455 36371424
    732125 7wv4:C (3.35) BS01 rna ? N/A O15455 36371424
    732126 7wv4:C (3.35) BS02 rna ? N/A O15455 36371424
    732127 7wv4:D (3.35) BS01 rna ? N/A O15455 36371424
    732128 7wv4:D (3.35) BS02 rna ? N/A O15455 36371424
    732129 7wv5:A (3.1) BS01 rna ? N/A O15455 36371424
    732130 7wv5:A (3.1) BS02 rna ? N/A O15455 36371424
    732131 7wv5:B (3.1) BS01 rna ? N/A O15455 36371424
    732132 7wv5:B (3.1) BS02 rna ? N/A O15455 36371424
    732133 7wv9:R (3.36) BS01 9GF ? GO:0002866 ... P21554 35637350
    732134 7wv9:R (3.36) BS02 7IC ? GO:0002866 ... P21554 35637350
    732135 7wva:A (2.05) BS01 6I3 ? N/A P97784 36226040
    732136 7wve:A (3.11) BS01 rna ? N/A O15455 36371424
    732137 7wve:A (3.11) BS02 rna ? N/A O15455 36371424
    732138 7wve:B (3.11) BS01 rna ? N/A O15455 36371424
    732139 7wve:B (3.11) BS02 rna ? N/A O15455 36371424
    732140 7wvf:A (3.91) BS01 rna ? N/A O15455 36371424
    732141 7wvf:A (3.91) BS02 rna ? N/A O15455 36371424
    732142 7wvf:B (3.91) BS01 rna ? N/A O15455 36371424
    732143 7wvf:B (3.91) BS02 rna ? N/A O15455 36371424
    732144 7wvg:A (2.6) BS01 FUC ? GO:0019031 ... A0A1W5II89 36494358
    732145 7wvg:C (2.6) BS01 FUC N/A N/A N/A 36494358
    732146 7wvj:A (3.26) BS01 rna ? N/A O15455 36371424
    732147 7wvj:A (3.26) BS02 rna ? N/A O15455 36371424
    732148 7wvj:B (3.26) BS01 rna ? N/A O15455 36371424
    732149 7wvj:B (3.26) BS02 rna ? N/A O15455 36371424
    732150 7wvk:A (1.42) BS01 6IQ ? GO:0000122 ... P61964 36207403
    732151 7wvs:A (2.35) BS01 SAM ? GO:0008168 ... A0A1R3S1W7 N/A
    732152 7wvs:B (2.35) BS01 SAM ? GO:0008168 ... A0A1R3S1W7 N/A
    732153 7wvt:A (1.5) BS01 B7N ? GO:0005628 ... Q06705 35775985
    732154 7wvu:R (3.3) BS01 peptide ? GO:0001664 ... P21462 35365641
    732155 7wvv:R (2.9) BS01 peptide ? GO:0001540 ... P0ABE7
    P25090
    35365641
    732156 7wvw:R (3.1) BS01 peptide ? GO:0001540 ... P0ABE7
    P25090
    35365641
    732157 7wvx:R (2.8) BS01 peptide ? GO:0001540 ... P0ABE7
    P25090
    35365641
    732158 7wvy:R (3.0) BS01 peptide ? GO:0001540 ... P0ABE7
    P25090
    35365641
    732159 7ww0:A (1.85) BS01 SAH ? GO:0008168 ... A0A1R3S1W7 N/A
    732160 7ww0:B (1.85) BS01 SAH ? GO:0008168 ... A0A1R3S1W7 N/A
    732161 7ww2:A (2.7) BS01 ZN N/A GO:0016787 ... N/A 37680460
    732162 7ww2:B (2.7) BS01 ZN N/A GO:0016787 ... N/A 37680460
    732163 7ww4:A (2.23006) BS01 CA ? GO:0004553 ... A0A1G7XNR7 N/A
    732164 7ww4:A (2.23006) BS02 CA ? GO:0004553 ... A0A1G7XNR7 N/A
    732165 7ww5:A (1.57) BS01 8DG 3.6.1.55 GO:0000287 ... P08337 35594391
    732166 7ww6:A (1.36) BS01 GLC 3.6.1.55 GO:0000287 ... P08337 35594391
    732167 7ww6:A (1.36) BS02 8DG 3.6.1.55 GO:0000287 ... P08337 35594391
    732168 7ww6:A (1.36) BS03 MN 3.6.1.55 GO:0000287 ... P08337 35594391
    732169 7ww7:A (1.67) BS01 GLC 3.6.1.55 GO:0000287 ... P08337 35594391
    732170 7ww7:A (1.67) BS02 8DG 3.6.1.55 GO:0000287 ... P08337 35594391
    732171 7ww7:A (1.67) BS03 MN 3.6.1.55 GO:0000287 ... P08337 35594391
    732172 7ww7:A (1.67) BS04 MN 3.6.1.55 GO:0000287 ... P08337 35594391
    732173 7ww8:A (1.64) BS01 GLC 3.6.1.55 GO:0000287 ... P08337 35594391
    732174 7ww8:A (1.64) BS02 8DG 3.6.1.55 GO:0000287 ... P08337 35594391
    732175 7ww8:A (1.64) BS03 MN 3.6.1.55 GO:0000287 ... P08337 35594391
    732176 7ww8:A (1.64) BS04 MN 3.6.1.55 GO:0000287 ... P08337 35594391
    732177 7ww9:A (1.8) BS01 8DG 3.6.1.55 GO:0000287 ... P08337 35594391
    732178 7ww9:A (1.8) BS02 8OG 3.6.1.55 GO:0000287 ... P08337 35594391
    732179 7ww9:A (1.8) BS03 MN 3.6.1.55 GO:0000287 ... P08337 35594391
    732180 7ww9:A (1.8) BS04 MN 3.6.1.55 GO:0000287 ... P08337 35594391
    732181 7wwa:A (1.9) BS01 GLC 3.6.1.55 GO:0000287 ... P08337 35594391
    732182 7wwa:A (1.9) BS02 8OG 3.6.1.55 GO:0000287 ... P08337 35594391
    732183 7wwa:A (1.9) BS03 MN 3.6.1.55 GO:0000287 ... P08337 35594391
    732184 7wwb:A (3.86) BS01 CHT ? GO:0005654 ... Q8WWI5 35700727
    732185 7wwb:A (3.86) BS02 CLR ? GO:0005654 ... Q8WWI5 35700727
    732186 7wwb:B (3.86) BS01 CHT ? GO:0005654 ... Q8WWI5 35700727
    732187 7wwb:B (3.86) BS02 CLR ? GO:0005654 ... Q8WWI5 35700727
    732188 7wwc:A (2.20216) BS01 BGC ? GO:0004553 ... A0A1G7XNR7 N/A
    732189 7wwc:A (2.20216) BS02 BGC ? GO:0004553 ... A0A1G7XNR7 N/A
    732190 7wwc:A (2.20216) BS03 BGC ? GO:0004553 ... A0A1G7XNR7 N/A
    732191 7wwc:A (2.20216) BS04 BGC ? GO:0004553 ... A0A1G7XNR7 N/A
    732192 7wwd:A (2.39) BS01 SQL ? GO:0005628 ... Q06705 35775985
    732193 7wwg:A (3.4) BS01 B7N ? GO:0005628 ... Q06705 35775985
    732194 7wwn:A (2.05) BS01 CA ? GO:0046872 ... Q5SH57 36048084
    732195 7wwn:A (2.05) BS02 CA ? GO:0046872 ... Q5SH57 36048084
    732196 7wwn:A (2.05) BS03 72I ? GO:0046872 ... Q5SH57 36048084
    732197 7wwn:A (2.05) BS04 72I ? GO:0046872 ... Q5SH57 36048084
    732198 7wwo:A (2.17) BS01 CA ? GO:0046872 ... Q5SH57 36048084
    732199 7wwo:A (2.17) BS02 CA ? GO:0046872 ... Q5SH57 36048084
    732200 7wwo:A (2.17) BS03 CA ? GO:0046872 ... Q5SH57 36048084

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).