SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    733201 7x3x:E (3.2) BS02 dna ? GO:0000786 ... P84233 38177688
    733202 7x3x:F (3.2) BS01 dna ? GO:0000786 ... P62799 38177688
    733203 7x3x:F (3.2) BS02 dna ? GO:0000786 ... P62799 38177688
    733204 7x3x:G (3.2) BS01 dna ? GO:0000786 ... P06897 38177688
    733205 7x3x:G (3.2) BS02 dna ? GO:0000786 ... P06897 38177688
    733206 7x3x:H (3.2) BS01 dna ? GO:0000786 ... P02281 38177688
    733207 7x3x:H (3.2) BS02 dna ? GO:0000786 ... P02281 38177688
    733208 7x3z:A (2.25) BS01 NAD 1.1.1.51
    1.1.1.62
    GO:0003824 ... P14061 36634828
    733209 7x3z:B (2.25) BS01 NAD 1.1.1.51
    1.1.1.62
    GO:0003824 ... P14061 36634828
    733210 7x3z:B (2.25) BS02 J3Z 1.1.1.51
    1.1.1.62
    GO:0003824 ... P14061 36634828
    733211 7x48:A (0.86) BS01 KNA ? GO:0005515 ... P05413 N/A
    733212 7x4g:A (2.6) BS01 UTP 2.7.7.- GO:0000166 ... K1KYT0 37604815
    733213 7x4g:A (2.6) BS02 UTP 2.7.7.- GO:0000166 ... K1KYT0 37604815
    733214 7x4h:A (1.77) BS01 8BH 2.7.11.1 GO:0004672 ... P68400 36130444
    733215 7x4h:A (1.77) BS02 8BH 2.7.11.1 GO:0004672 ... P68400 36130444
    733216 7x4j:A (0.96) BS01 DCR ? GO:0005515 ... P05413 N/A
    733217 7x4l:A (2.59) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733218 7x4l:A (2.59) BS02 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733219 7x4l:B (2.59) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733220 7x4l:B (2.59) BS02 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733221 7x4l:C (2.59) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733222 7x4l:C (2.59) BS02 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733223 7x4l:D (2.59) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733224 7x4l:D (2.59) BS02 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733225 7x4l:E (2.59) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733226 7x4l:E (2.59) BS02 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733227 7x4l:F (2.59) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733228 7x4l:F (2.59) BS02 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733229 7x4n:A (2.88) BS01 GTP 3.6.5.- GO:0000226 ... P02550 36065637
    733230 7x4n:B (2.88) BS01 GDP ? GO:0000226 ... P02554 36065637
    733231 7x4n:E (2.88) BS01 ANP 3.6.4.- GO:0003777 ... G5EGS3 36065637
    733232 7x4n:E (2.88) BS02 MG 3.6.4.- GO:0003777 ... G5EGS3 36065637
    733233 7x4p:A (1.6) BS01 UTP 2.7.7.- GO:0000166 ... P0DX98 37604815
    733234 7x4p:A (1.6) BS02 U 2.7.7.- GO:0000166 ... P0DX98 37604815
    733235 7x4q:A (1.95) BS01 UTP 2.7.7.- GO:0000166 ... P0DSP3 37604815
    733236 7x4q:A (1.95) BS02 UTP 2.7.7.- GO:0000166 ... P0DSP3 37604815
    733237 7x4q:A (1.95) BS03 MG 2.7.7.- GO:0000166 ... P0DSP3 37604815
    733238 7x4q:B (1.95) BS01 UTP 2.7.7.- GO:0000166 ... P0DSP3 37604815
    733239 7x4q:B (1.95) BS02 UTP 2.7.7.- GO:0000166 ... P0DSP3 37604815
    733240 7x4q:B (1.95) BS03 MG 2.7.7.- GO:0000166 ... P0DSP3 37604815
    733241 7x4t:A (2.2) BS01 2KH 2.7.7.- GO:0000166 ... P0DSP3 37604815
    733242 7x4t:A (2.2) BS02 2KH 2.7.7.- GO:0000166 ... P0DSP3 37604815
    733243 7x4t:A (2.2) BS03 MG 2.7.7.- GO:0000166 ... P0DSP3 37604815
    733244 7x4t:A (2.2) BS04 MG 2.7.7.- GO:0000166 ... P0DSP3 37604815
    733245 7x4t:B (2.2) BS01 2KH 2.7.7.- GO:0000166 ... P0DSP3 37604815
    733246 7x4t:B (2.2) BS02 2KH 2.7.7.- GO:0000166 ... P0DSP3 37604815
    733247 7x4t:B (2.2) BS03 MG 2.7.7.- GO:0000166 ... P0DSP3 37604815
    733248 7x4u:A (1.98) BS01 5ID 2.7.11.24 GO:0000165 ... P28482 N/A
    733249 7x4u:A (1.98) BS02 8DK 2.7.11.24 GO:0000165 ... P28482 N/A
    733250 7x4w:A (3.209) BS01 9HB ? N/A Q14145 35306364
    733251 7x4w:B (3.209) BS01 9HB ? N/A Q14145 35306364
    733252 7x4w:D (3.209) BS01 9HB ? N/A Q14145 35306364
    733253 7x4x:A (2.96) BS01 9J3 ? N/A Q14145 35306364
    733254 7x4x:B (2.96) BS01 9J3 ? N/A Q14145 35306364
    733255 7x4x:C (2.96) BS01 9J3 ? N/A Q14145 35306364
    733256 7x4x:D (2.96) BS01 9J3 ? N/A Q14145 35306364
    733257 7x4x:E (2.96) BS01 9J3 ? N/A Q14145 35306364
    733258 7x4x:F (2.96) BS01 9J3 ? N/A Q14145 35306364
    733259 7x4y:A (1.9) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733260 7x4y:A (1.9) BS02 ABU 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733261 7x4y:A (1.9) BS03 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733262 7x4y:B (1.9) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733263 7x4y:B (1.9) BS02 ABU 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733264 7x4y:B (1.9) BS03 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733265 7x4y:B (1.9) BS04 ABU 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733266 7x4y:C (1.9) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733267 7x4y:C (1.9) BS02 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733268 7x4y:C (1.9) BS03 ABU 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733269 7x4y:D (1.9) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733270 7x4y:D (1.9) BS02 ABU 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733271 7x4y:E (1.9) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733272 7x4y:E (1.9) BS02 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733273 7x4y:E (1.9) BS03 ABU 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733274 7x4y:F (1.9) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733275 7x4y:F (1.9) BS02 ABU 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733276 7x4y:F (1.9) BS03 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733277 7x4y:F (1.9) BS04 ABU 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733278 7x50:A (0.93) BS01 87K ? GO:0005515 ... P05413 N/A
    733279 7x51:A (2.0) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733280 7x51:A (2.0) BS02 GUA 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733281 7x51:A (2.0) BS03 GUA 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733282 7x51:B (2.0) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733283 7x51:B (2.0) BS02 GUA 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733284 7x51:C (2.0) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733285 7x51:C (2.0) BS02 GUA 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733286 7x51:C (2.0) BS03 GUA 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733287 7x51:D (2.0) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733288 7x51:D (2.0) BS02 GUA 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733289 7x51:D (2.0) BS03 GUA 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733290 7x51:E (2.0) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733291 7x51:E (2.0) BS02 GUA 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733292 7x51:F (2.0) BS01 GUA 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733293 7x51:F (2.0) BS02 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733294 7x51:F (2.0) BS03 GUA 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733295 7x52:A (1.9) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733296 7x52:A (1.9) BS02 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733297 7x52:B (1.9) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733298 7x52:B (1.9) BS02 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733299 7x52:C (1.9) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733300 7x52:C (1.9) BS02 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733301 7x52:D (1.9) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733302 7x52:D (1.9) BS02 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733303 7x52:E (1.9) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733304 7x52:E (1.9) BS02 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733305 7x52:F (1.9) BS01 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733306 7x52:F (1.9) BS02 PLP 4.1.1.15 GO:0004351 ... Q8A4M9 36358099
    733307 7x53:A (3.35) BS01 HEM ? GO:0004497 ... Q88LH7 N/A
    733308 7x53:B (3.35) BS01 HEM ? GO:0004497 ... Q88LH7 N/A
    733309 7x54:A (3.9) BS01 ADP N/A N/A N/A N/A
    733310 7x54:B (3.9) BS01 ADP N/A N/A N/A N/A
    733311 7x54:C (3.9) BS01 ADP N/A N/A N/A N/A
    733312 7x54:D (3.9) BS01 ADP N/A N/A N/A N/A
    733313 7x54:E (3.9) BS01 ADP N/A N/A N/A N/A
    733314 7x55:A (8.6) BS01 GTP N/A N/A N/A N/A
    733315 7x55:B (8.6) BS01 GTP N/A N/A N/A N/A
    733316 7x55:C (8.6) BS01 GTP N/A N/A N/A N/A
    733317 7x55:D (8.6) BS01 GTP N/A N/A N/A N/A
    733318 7x55:E (8.6) BS01 GTP N/A N/A N/A N/A
    733319 7x56:A (3.5) BS01 GDP N/A N/A N/A N/A
    733320 7x56:B (3.5) BS01 GDP N/A N/A N/A N/A
    733321 7x56:C (3.5) BS01 GDP N/A N/A N/A N/A
    733322 7x56:D (3.5) BS01 GDP N/A N/A N/A N/A
    733323 7x56:E (3.5) BS01 GDP N/A N/A N/A N/A
    733324 7x57:A (3.63) BS01 dna ? GO:0000786 ... P68431 36322721
    733325 7x57:A (3.63) BS02 dna ? GO:0000786 ... P68431 36322721
    733326 7x57:B (3.63) BS01 dna ? GO:0000781 ... P62805 36322721
    733327 7x57:B (3.63) BS02 dna ? GO:0000781 ... P62805 36322721
    733328 7x57:C (3.63) BS01 dna ? GO:0000786 ... P68431 36322721
    733329 7x57:C (3.63) BS02 dna ? GO:0000786 ... P68431 36322721
    733330 7x57:D (3.63) BS01 dna ? GO:0000781 ... P62805 36322721
    733331 7x57:D (3.63) BS02 dna ? GO:0000781 ... P62805 36322721
    733332 7x57:E (3.63) BS01 dna ? GO:0000786 ... P68431 36322721
    733333 7x57:E (3.63) BS02 dna ? GO:0000786 ... P68431 36322721
    733334 7x57:F (3.63) BS01 dna ? GO:0000781 ... P62805 36322721
    733335 7x57:F (3.63) BS02 dna ? GO:0000781 ... P62805 36322721
    733336 7x57:G (3.63) BS01 dna ? GO:0000786 ... P68431 36322721
    733337 7x57:G (3.63) BS02 dna ? GO:0000786 ... P68431 36322721
    733338 7x57:H (3.63) BS01 dna ? GO:0000781 ... P62805 36322721
    733339 7x57:H (3.63) BS02 dna ? GO:0000781 ... P62805 36322721
    733340 7x58:A (3.93) BS01 dna ? GO:0000786 ... P68431 36322721
    733341 7x58:A (3.93) BS02 dna ? GO:0000786 ... P68431 36322721
    733342 7x58:B (3.93) BS01 dna ? GO:0000781 ... P62805 36322721
    733343 7x58:B (3.93) BS02 dna ? GO:0000781 ... P62805 36322721
    733344 7x58:C (3.93) BS01 dna ? GO:0000786 ... P68431 36322721
    733345 7x58:C (3.93) BS02 dna ? GO:0000786 ... P68431 36322721
    733346 7x58:D (3.93) BS01 dna ? GO:0000781 ... P62805 36322721
    733347 7x58:D (3.93) BS02 dna ? GO:0000781 ... P62805 36322721
    733348 7x58:E (3.93) BS01 dna ? GO:0000786 ... P68431 36322721
    733349 7x58:E (3.93) BS02 dna ? GO:0000786 ... P68431 36322721
    733350 7x58:F (3.93) BS01 dna ? GO:0000781 ... P62805 36322721
    733351 7x58:F (3.93) BS02 dna ? GO:0000781 ... P62805 36322721
    733352 7x58:G (3.93) BS01 dna ? GO:0000786 ... P68431 36322721
    733353 7x58:G (3.93) BS02 dna ? GO:0000786 ... P68431 36322721
    733354 7x58:H (3.93) BS01 dna ? GO:0000781 ... P62805 36322721
    733355 7x58:H (3.93) BS02 dna ? GO:0000781 ... P62805 36322721
    733356 7x59:A (6.5) BS01 GTP N/A N/A N/A N/A
    733357 7x59:B (6.5) BS01 GTP N/A N/A N/A N/A
    733358 7x59:C (6.5) BS01 GTP N/A N/A N/A N/A
    733359 7x59:D (6.5) BS01 GTP N/A N/A N/A N/A
    733360 7x59:E (6.5) BS01 GTP N/A N/A N/A N/A
    733361 7x5a:A (3.01) BS01 dna 3.6.4.12 GO:0003677 ... Q51425 37025142
    733362 7x5a:A (3.01) BS02 dna 3.6.4.12 GO:0003677 ... Q51425 37025142
    733363 7x5a:B (3.01) BS01 dna 3.6.4.12 GO:0003677 ... Q51425 37025142
    733364 7x5a:B (3.01) BS02 dna 3.6.4.12 GO:0003677 ... Q51425 37025142
    733365 7x5a:C (3.01) BS01 dna 3.6.4.12 GO:0003677 ... Q51425 37025142
    733366 7x5a:C (3.01) BS02 dna 3.6.4.12 GO:0003677 ... Q51425 37025142
    733367 7x5a:D (3.01) BS01 dna 3.6.4.12 GO:0003677 ... Q51425 37025142
    733368 7x5a:D (3.01) BS02 dna 3.6.4.12 GO:0003677 ... Q51425 37025142
    733369 7x5a:F (3.01) BS01 dna 3.6.4.12 GO:0003677 ... Q51425 37025142
    733370 7x5a:F (3.01) BS02 dna 3.6.4.12 GO:0003677 ... Q51425 37025142
    733371 7x5a:G (3.01) BS01 dna 3.6.4.12 GO:0003677 ... Q51425 37025142
    733372 7x5a:G (3.01) BS02 dna 3.6.4.12 GO:0003677 ... Q51425 37025142
    733373 7x5b:A (2.16) BS01 ADP 3.6.4.12 GO:0000400 ... Q51426 37025142
    733374 7x5c:A (-1.00) BS01 peptide ? N/A A0PGB2 N/A
    733375 7x5e:A (2.3) BS01 dna ? GO:0003677 ... O15525 36454022
    733376 7x5e:A (2.3) BS02 dna ? GO:0003677 ... O15525 36454022
    733377 7x5e:B (2.3) BS01 dna ? GO:0000978 ... Q16236 36454022
    733378 7x5e:B (2.3) BS02 dna ? GO:0000978 ... Q16236 36454022
    733379 7x5e:E (2.3) BS01 dna ? GO:0003677 ... O15525 36454022
    733380 7x5e:E (2.3) BS02 dna ? GO:0003677 ... O15525 36454022
    733381 7x5e:F (2.3) BS01 dna ? GO:0000978 ... Q16236 36454022
    733382 7x5e:F (2.3) BS02 dna ? GO:0000978 ... Q16236 36454022
    733383 7x5f:A (2.6) BS01 dna ? GO:0003677 ... O15525 36454022
    733384 7x5f:A (2.6) BS02 dna ? GO:0003677 ... O15525 36454022
    733385 7x5f:B (2.6) BS01 dna ? GO:0000978 ... Q16236 36454022
    733386 7x5f:B (2.6) BS02 dna ? GO:0000978 ... Q16236 36454022
    733387 7x5f:E (2.6) BS01 dna ? GO:0003677 ... O15525 36454022
    733388 7x5f:E (2.6) BS02 dna ? GO:0003677 ... O15525 36454022
    733389 7x5f:F (2.6) BS01 dna ? GO:0000978 ... Q16236 36454022
    733390 7x5f:F (2.6) BS02 dna ? GO:0000978 ... Q16236 36454022
    733391 7x5g:A (2.3) BS01 dna ? GO:0003677 ... O15525 36454022
    733392 7x5g:A (2.3) BS02 dna ? GO:0003677 ... O15525 36454022
    733393 7x5g:B (2.3) BS01 dna ? GO:0000978 ... Q16236 36454022
    733394 7x5g:B (2.3) BS02 dna ? GO:0000978 ... Q16236 36454022
    733395 7x5g:E (2.3) BS01 dna ? GO:0003677 ... O15525 36454022
    733396 7x5g:E (2.3) BS02 dna ? GO:0003677 ... O15525 36454022
    733397 7x5g:F (2.3) BS01 dna ? GO:0000978 ... Q16236 36454022
    733398 7x5g:F (2.3) BS02 dna ? GO:0000978 ... Q16236 36454022
    733399 7x5h:R (3.1) BS01 8K3 ? GO:0001586 ... P0ABE7
    P47898
    35610220
    733400 7x5j:A (2.1) BS01 NAP ? GO:0000166 ... A0A520KTT2 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).