SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    734601 7xg1:C (3.3) BS01 rna N/A N/A N/A N/A
    734602 7xg1:D (3.3) BS01 rna N/A N/A N/A N/A
    734603 7xg1:E (3.3) BS01 rna N/A N/A N/A N/A
    734604 7xg1:F (3.3) BS01 rna N/A N/A N/A N/A
    734605 7xg2:A (2.8) BS01 dna N/A N/A N/A 37343553
    734606 7xg2:A (2.8) BS02 dna N/A N/A N/A 37343553
    734607 7xg2:A (2.8) BS03 ZN N/A N/A N/A 37343553
    734608 7xg2:B (2.8) BS01 rna N/A N/A N/A 37343553
    734609 7xg2:B (2.8) BS02 dna N/A N/A N/A 37343553
    734610 7xg2:B (2.8) BS03 dna N/A N/A N/A 37343553
    734611 7xg2:C (2.8) BS01 rna N/A N/A N/A 37343553
    734612 7xg2:C (2.8) BS02 dna N/A N/A N/A 37343553
    734613 7xg2:C (2.8) BS03 dna N/A N/A N/A 37343553
    734614 7xg2:D (2.8) BS01 rna N/A N/A N/A 37343553
    734615 7xg2:D (2.8) BS02 dna N/A N/A N/A 37343553
    734616 7xg2:E (2.8) BS01 rna N/A N/A N/A 37343553
    734617 7xg2:E (2.8) BS02 dna N/A N/A N/A 37343553
    734618 7xg2:F (2.8) BS01 rna N/A N/A N/A 37343553
    734619 7xg2:F (2.8) BS02 dna N/A N/A N/A 37343553
    734620 7xg2:G (2.8) BS01 rna N/A N/A N/A 37343553
    734621 7xg2:G (2.8) BS02 dna N/A N/A N/A 37343553
    734622 7xg2:H (2.8) BS01 rna N/A N/A N/A 37343553
    734623 7xg2:H (2.8) BS02 dna N/A N/A N/A 37343553
    734624 7xg3:A (3.0) BS01 dna N/A N/A N/A 37343553
    734625 7xg3:A (3.0) BS02 dna N/A N/A N/A 37343553
    734626 7xg3:A (3.0) BS03 ZN N/A N/A N/A 37343553
    734627 7xg3:B (3.0) BS01 rna N/A N/A N/A 37343553
    734628 7xg3:B (3.0) BS02 dna N/A N/A N/A 37343553
    734629 7xg3:B (3.0) BS03 dna N/A N/A N/A 37343553
    734630 7xg3:C (3.0) BS01 rna N/A N/A N/A 37343553
    734631 7xg3:C (3.0) BS02 dna N/A N/A N/A 37343553
    734632 7xg3:C (3.0) BS03 dna N/A N/A N/A 37343553
    734633 7xg3:D (3.0) BS01 rna N/A N/A N/A 37343553
    734634 7xg3:D (3.0) BS02 dna N/A N/A N/A 37343553
    734635 7xg3:E (3.0) BS01 rna N/A N/A N/A 37343553
    734636 7xg3:E (3.0) BS02 dna N/A N/A N/A 37343553
    734637 7xg3:F (3.0) BS01 rna N/A N/A N/A 37343553
    734638 7xg3:F (3.0) BS02 dna N/A N/A N/A 37343553
    734639 7xg3:G (3.0) BS01 rna N/A N/A N/A 37343553
    734640 7xg3:G (3.0) BS02 dna N/A N/A N/A 37343553
    734641 7xg3:H (3.0) BS01 rna N/A N/A N/A 37343553
    734642 7xg3:H (3.0) BS02 dna N/A N/A N/A 37343553
    734643 7xg3:L (3.0) BS01 dna N/A GO:0003676 ... N/A 37343553
    734644 7xg4:A (3.7) BS01 dna N/A N/A N/A 37343553
    734645 7xg4:A (3.7) BS02 dna N/A N/A N/A 37343553
    734646 7xg4:A (3.7) BS03 ZN N/A N/A N/A 37343553
    734647 7xg4:B (3.7) BS01 rna N/A N/A N/A 37343553
    734648 7xg4:B (3.7) BS02 dna N/A N/A N/A 37343553
    734649 7xg4:B (3.7) BS03 dna N/A N/A N/A 37343553
    734650 7xg4:C (3.7) BS01 rna N/A N/A N/A 37343553
    734651 7xg4:C (3.7) BS02 dna N/A N/A N/A 37343553
    734652 7xg4:C (3.7) BS03 dna N/A N/A N/A 37343553
    734653 7xg4:D (3.7) BS01 rna N/A N/A N/A 37343553
    734654 7xg4:D (3.7) BS02 dna N/A N/A N/A 37343553
    734655 7xg4:D (3.7) BS03 dna N/A N/A N/A 37343553
    734656 7xg4:E (3.7) BS01 rna N/A N/A N/A 37343553
    734657 7xg4:E (3.7) BS02 dna N/A N/A N/A 37343553
    734658 7xg4:F (3.7) BS01 rna N/A N/A N/A 37343553
    734659 7xg4:F (3.7) BS02 dna N/A N/A N/A 37343553
    734660 7xg4:G (3.7) BS01 rna N/A N/A N/A 37343553
    734661 7xg4:G (3.7) BS02 dna N/A N/A N/A 37343553
    734662 7xg4:H (3.7) BS01 rna N/A N/A N/A 37343553
    734663 7xg4:H (3.7) BS02 dna N/A N/A N/A 37343553
    734664 7xg4:L (3.7) BS01 dna N/A GO:0003676 ... N/A 37343553
    734665 7xg5:A (1.76) BS01 PLP ? GO:0003824 ... Q0C8G1 36460668
    734666 7xg5:B (1.76) BS01 PLP ? GO:0003824 ... Q0C8G1 36460668
    734667 7xg9:A (1.5) BS01 FAD 1.5.1.54 GO:0004489 ... G2IQS8 N/A
    734668 7xg9:B (1.5) BS01 FAD 1.5.1.54 GO:0004489 ... G2IQS8 N/A
    734669 7xga:A (-1.00) BS01 ZN 2.3.2.27 GO:0035064 ... Q8QZY3
    Q8VDF2
    36420895
    734670 7xga:A (-1.00) BS02 ZN 2.3.2.27 GO:0035064 ... Q8QZY3
    Q8VDF2
    36420895
    734671 7xga:A (-1.00) BS03 ZN 2.3.2.27 GO:0035064 ... Q8QZY3
    Q8VDF2
    36420895
    734672 7xgc:A (1.6) BS01 MN 3.1.-.- GO:0003723 ... P03433 N/A
    734673 7xgc:A (1.6) BS02 MN 3.1.-.- GO:0003723 ... P03433 N/A
    734674 7xgi:A (2.0) BS01 SAH 2.1.1.6 GO:0000287 ... P22734 37436881
    734675 7xgi:A (2.0) BS02 DNI 2.1.1.6 GO:0000287 ... P22734 37436881
    734676 7xgi:A (2.0) BS03 MG 2.1.1.6 GO:0000287 ... P22734 37436881
    734677 7xgj:A (2.8) BS01 peptide 3.4.24.24 GO:0004222 ... P08253 35687819
    734678 7xgj:A (2.8) BS02 ZN 3.4.24.24 GO:0004222 ... P08253 35687819
    734679 7xgj:A (2.8) BS03 ZN 3.4.24.24 GO:0004222 ... P08253 35687819
    734680 7xgj:A (2.8) BS04 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    734681 7xgj:A (2.8) BS05 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    734682 7xgj:A (2.8) BS06 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    734683 7xgj:A (2.8) BS07 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    734684 7xgj:B (2.8) BS01 peptide 3.4.24.24 GO:0004222 ... P08253 35687819
    734685 7xgj:B (2.8) BS02 peptide 3.4.24.24 GO:0004222 ... P08253 35687819
    734686 7xgj:B (2.8) BS03 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    734687 7xgj:B (2.8) BS04 ZN 3.4.24.24 GO:0004222 ... P08253 35687819
    734688 7xgj:B (2.8) BS05 ZN 3.4.24.24 GO:0004222 ... P08253 35687819
    734689 7xgj:B (2.8) BS06 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    734690 7xgj:B (2.8) BS07 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    734691 7xgj:B (2.8) BS08 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    734692 7xgj:C (2.8) BS01 peptide 3.4.24.24 GO:0004222 ... P08253 35687819
    734693 7xgj:C (2.8) BS02 ZN 3.4.24.24 GO:0004222 ... P08253 35687819
    734694 7xgj:C (2.8) BS03 ZN 3.4.24.24 GO:0004222 ... P08253 35687819
    734695 7xgj:C (2.8) BS04 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    734696 7xgj:C (2.8) BS05 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    734697 7xgl:A (2.11) BS01 0L1 N/A GO:0004514 ... N/A 36517246
    734698 7xgl:B (2.11) BS01 0L1 N/A GO:0004514 ... N/A 36517246
    734699 7xgm:A (2.85) BS01 NTM N/A GO:0004514 ... N/A 36517246
    734700 7xgm:B (2.85) BS01 NTM N/A GO:0004514 ... N/A 36517246
    734701 7xgn:A (2.6) BS01 NIO N/A GO:0004514 ... N/A 36517246
    734702 7xgn:B (2.6) BS01 NIO N/A GO:0004514 ... N/A 36517246
    734703 7xgt:A (1.7) BS01 ZN ? GO:0046872 ... Q6H8B1 N/A
    734704 7xgt:A (1.7) BS02 ZN ? GO:0046872 ... Q6H8B1 N/A
    734705 7xgt:B (1.7) BS01 ZN ? GO:0046872 ... Q6H8B1 N/A
    734706 7xgt:B (1.7) BS02 ZN ? GO:0046872 ... Q6H8B1 N/A
    734707 7xgx:A (2.39) BS01 UPG ? N/A Q5ZRL9 N/A
    734708 7xgx:B (2.39) BS01 UPG ? N/A Q5ZRL9 N/A
    734709 7xgy:A (3.5) BS01 HEM ? GO:0004601 ... P69905 36522503
    734710 7xgy:B (3.5) BS01 HEM ? GO:0004601 ... P68871 36522503
    734711 7xgy:C (3.5) BS01 HEM ? GO:0004601 ... P69905 36522503
    734712 7xgy:D (3.5) BS01 HEM ? GO:0004601 ... P68871 36522503
    734713 7xh2:A (2.8) BS01 NDP ? GO:0000166 ... Q5JCL3 36970210
    734714 7xh4:A (2.2) BS01 EN7 ? GO:0000166 ... Q5JCL3 36970210
    734715 7xh4:A (2.2) BS02 NDP ? GO:0000166 ... Q5JCL3 36970210
    734716 7xh6:A (1.75) BS01 JHL 2.3.1.-
    2.3.1.48
    N/A Q92793 N/A
    734717 7xh6:A (1.75) BS02 JHL 2.3.1.-
    2.3.1.48
    N/A Q92793 N/A
    734718 7xh6:B (1.75) BS01 JHL 2.3.1.-
    2.3.1.48
    N/A Q92793 N/A
    734719 7xh6:B (1.75) BS02 JHL 2.3.1.-
    2.3.1.48
    N/A Q92793 N/A
    734720 7xha:A (3.35) BS01 BEF 7.4.2.8 GO:0005524 ... P28366 36598944
    734721 7xha:A (3.35) BS02 ADP 7.4.2.8 GO:0005524 ... P28366 36598944
    734722 7xhb:A (3.33) BS01 ADP 7.4.2.8 GO:0005524 ... P28366 36598944
    734723 7xhe:A (1.59) BS01 JHF 2.3.1.-
    2.3.1.48
    N/A Q92793 N/A
    734724 7xhe:B (1.59) BS01 JHF 2.3.1.-
    2.3.1.48
    N/A Q92793 N/A
    734725 7xhf:A (2.68) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 36279435
    734726 7xhf:B (2.68) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 36279435
    734727 7xhg:B (2.46) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 36279435
    734728 7xhg:C (2.46) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 36279435
    734729 7xhg:D (2.46) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 36279435
    734730 7xhh:A (2.1) BS01 DYO 3.4.19.12 GO:0004843 ... Q93009 N/A
    734731 7xhh:B (2.1) BS01 DYO 3.4.19.12 GO:0004843 ... Q93009 N/A
    734732 7xhk:B (2.3) BS01 DVU 3.4.19.12 GO:0004843 ... Q93009 N/A
    734733 7xhl:A (3.25) BS01 NMN 1.1.1.49 GO:0004345 ... P21907 N/A
    734734 7xhl:B (3.25) BS01 NMN 1.1.1.49 GO:0004345 ... P21907 N/A
    734735 7xhl:E (3.25) BS01 NMN 1.1.1.49 GO:0004345 ... P21907 N/A
    734736 7xhl:G (3.25) BS01 NMN 1.1.1.49 GO:0004345 ... P21907 N/A
    734737 7xhm:A (0.88) BS01 EO3 ? GO:0005515 ... P05413 N/A
    734738 7xhn:I (3.71) BS01 peptide ? GO:0000070 ... Q92674 36085283
    734739 7xhn:K (3.71) BS01 peptide ? GO:0000070 ... Q9BS16 36085283
    734740 7xhn:L (3.71) BS01 peptide ? GO:0000775 ... Q8N0S6 36085283
    734741 7xhn:N (3.71) BS01 dna ? GO:0000775 ... Q96H22 36085283
    734742 7xhn:N (3.71) BS02 dna ? GO:0000775 ... Q96H22 36085283
    734743 7xhn:N (3.71) BS03 peptide ? GO:0000775 ... Q96H22 36085283
    734744 7xho:K (3.29) BS01 peptide ? GO:0000070 ... Q9BS16 36085283
    734745 7xho:L (3.29) BS01 peptide ? GO:0000775 ... Q8N0S6 36085283
    734746 7xho:N (3.29) BS01 peptide ? GO:0000775 ... Q96H22 36085283
    734747 7xhq:A (2.2) BS01 FIZ 3.1.3.48 GO:0004725 ... Q06124 36476046
    734748 7xhq:B (2.2) BS01 FIZ 3.1.3.48 GO:0004725 ... Q06124 36476046
    734749 7xht:A (2.55) BS01 rna N/A N/A N/A 36344504
    734750 7xht:A (2.55) BS02 dna N/A N/A N/A 36344504
    734751 7xht:A (2.55) BS03 dna N/A N/A N/A 36344504
    734752 7xht:A (2.55) BS04 MG N/A N/A N/A 36344504
    734753 7xhu:A (0.88) BS01 F23 ? GO:0005515 ... P05413 N/A
    734754 7xhv:A (3.996) BS01 dna ? GO:0003700 ... P53762 36343253
    734755 7xhv:A (3.996) BS02 dna ? GO:0003700 ... P53762 36343253
    734756 7xhv:B (3.996) BS01 dna ? GO:0046983 ... Q8BGD7 36343253
    734757 7xhw:A (1.94) BS01 ZN 3.5.2.6 GO:0008270 ... K0ITE2 36174533
    734758 7xhw:A (1.94) BS02 ZN 3.5.2.6 GO:0008270 ... K0ITE2 36174533
    734759 7xhw:B (1.94) BS01 ZN 3.5.2.6 GO:0008270 ... K0ITE2 36174533
    734760 7xhw:B (1.94) BS02 ZN 3.5.2.6 GO:0008270 ... K0ITE2 36174533
    734761 7xhw:C (1.94) BS01 ZN 3.5.2.6 GO:0008270 ... K0ITE2 36174533
    734762 7xhw:C (1.94) BS02 ZN 3.5.2.6 GO:0008270 ... K0ITE2 36174533
    734763 7xhw:D (1.94) BS01 ZN 3.5.2.6 GO:0008270 ... K0ITE2 36174533
    734764 7xhw:D (1.94) BS02 ZN 3.5.2.6 GO:0008270 ... K0ITE2 36174533
    734765 7xhx:A (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... K4PWX3 36174533
    734766 7xhx:A (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... K4PWX3 36174533
    734767 7xhx:B (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... K4PWX3 36174533
    734768 7xhx:B (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... K4PWX3 36174533
    734769 7xhx:C (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... K4PWX3 36174533
    734770 7xhx:C (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... K4PWX3 36174533
    734771 7xhx:D (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... K4PWX3 36174533
    734772 7xhx:D (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... K4PWX3 36174533
    734773 7xhy:A (2.16) BS01 E0X 2.7.10.1 GO:0004672 ... Q12866 36056187
    734774 7xi0:A (1.62) BS01 EL0 2.3.1.-
    2.3.1.48
    N/A Q92793 N/A
    734775 7xi0:A (1.62) BS02 EL0 2.3.1.-
    2.3.1.48
    N/A Q92793 N/A
    734776 7xi0:B (1.62) BS01 EL0 2.3.1.-
    2.3.1.48
    N/A Q92793 N/A
    734777 7xi0:B (1.62) BS02 EL0 2.3.1.-
    2.3.1.48
    N/A Q92793 N/A
    734778 7xi3:A (4.274) BS01 dna ? GO:0003700 ... Q61324 36343253
    734779 7xi3:A (4.274) BS02 dna ? GO:0003700 ... Q61324 36343253
    734780 7xi3:B (4.274) BS01 dna ? GO:0046983 ... Q8BGD7 36343253
    734781 7xi4:A (4.707) BS01 dna ? GO:0003700 ... P53762 36343253
    734782 7xi4:B (4.707) BS01 dna ? GO:0046983 ... Q8BGD7 36343253
    734783 7xi7:A (1.65) BS01 4RI 1.5.1.3 GO:0000900 ... P00374 35715223
    734784 7xi9:A (2.52) BS01 dna 2.1.1.37 GO:0003677 ... P26358 36414620
    734785 7xi9:A (2.52) BS02 dna 2.1.1.37 GO:0003677 ... P26358 36414620
    734786 7xi9:A (2.52) BS03 ZN 2.1.1.37 GO:0003677 ... P26358 36414620
    734787 7xi9:A (2.52) BS04 ZN 2.1.1.37 GO:0003677 ... P26358 36414620
    734788 7xi9:A (2.52) BS05 ZN 2.1.1.37 GO:0003677 ... P26358 36414620
    734789 7xi9:A (2.52) BS06 ZN 2.1.1.37 GO:0003677 ... P26358 36414620
    734790 7xi9:A (2.52) BS07 SAH 2.1.1.37 GO:0003677 ... P26358 36414620
    734791 7xib:A (2.23) BS01 dna 2.1.1.37 GO:0003677 ... P26358 36414620
    734792 7xib:A (2.23) BS02 dna 2.1.1.37 GO:0003677 ... P26358 36414620
    734793 7xib:A (2.23) BS03 ZN 2.1.1.37 GO:0003677 ... P26358 36414620
    734794 7xib:A (2.23) BS04 ZN 2.1.1.37 GO:0003677 ... P26358 36414620
    734795 7xif:A (2.14) BS01 MTA 2.5.1.16 GO:0003824 ... A3MU81 N/A
    734796 7xif:B (2.14) BS01 MTA 2.5.1.16 GO:0003824 ... A3MU81 N/A
    734797 7xif:C (2.14) BS01 MTA 2.5.1.16 GO:0003824 ... A3MU81 N/A
    734798 7xif:D (2.14) BS01 MTA 2.5.1.16 GO:0003824 ... A3MU81 N/A
    734799 7xif:E (2.14) BS01 MTA 2.5.1.16 GO:0003824 ... A3MU81 N/A
    734800 7xif:E (2.14) BS02 TER 2.5.1.16 GO:0003824 ... A3MU81 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).