SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    735001 7xk4:E (3.1) BS02 CA 7.2.1.1 GO:0005886 ... A5F5Y5 35882843
    735002 7xk4:F (3.1) BS01 FES 7.2.1.1 GO:0005886 ... A5F5Y4 35882843
    735003 7xk4:F (3.1) BS02 FAD 7.2.1.1 GO:0005886 ... A5F5Y4 35882843
    735004 7xk5:B (3.1) BS01 FMN 7.2.1.1 GO:0005886 ... A5F5X0 35882843
    735005 7xk5:B (3.1) BS02 RBF 7.2.1.1 GO:0005886 ... A5F5X0 35882843
    735006 7xk5:B (3.1) BS03 FMN 7.2.1.1 GO:0005886 ... A5F5X0 35882843
    735007 7xk5:C (3.1) BS01 FMN 7.2.1.1 GO:0005886 ... A5F5Y7 35882843
    735008 7xk5:D (3.1) BS01 FES 7.2.1.1 GO:0005886 ... A5F5Y6 35882843
    735009 7xk5:E (3.1) BS01 FES 7.2.1.1 GO:0005886 ... A5F5Y5 35882843
    735010 7xk5:F (3.1) BS01 FES 7.2.1.1 GO:0005886 ... A5F5Y4 35882843
    735011 7xk5:F (3.1) BS02 FAD 7.2.1.1 GO:0005886 ... A5F5Y4 35882843
    735012 7xk6:B (3.0) BS01 FMN 7.2.1.1 GO:0005886 ... A5F5X0 35882843
    735013 7xk6:B (3.0) BS02 RBF 7.2.1.1 GO:0005886 ... A5F5X0 35882843
    735014 7xk6:B (3.0) BS03 0NI 7.2.1.1 GO:0005886 ... A5F5X0 35882843
    735015 7xk6:B (3.0) BS04 FMN 7.2.1.1 GO:0005886 ... A5F5X0 35882843
    735016 7xk6:C (3.0) BS01 FMN 7.2.1.1 GO:0005886 ... A5F5Y7 35882843
    735017 7xk6:D (3.0) BS01 FES 7.2.1.1 GO:0005886 ... A5F5Y6 35882843
    735018 7xk6:E (3.0) BS01 FES 7.2.1.1 GO:0005886 ... A5F5Y5 35882843
    735019 7xk6:F (3.0) BS01 FES 7.2.1.1 GO:0005886 ... A5F5Y4 35882843
    735020 7xk6:F (3.0) BS02 FAD 7.2.1.1 GO:0005886 ... A5F5Y4 35882843
    735021 7xk7:B (2.9) BS01 FMN 7.2.1.1 GO:0005886 ... A5F5X0 35882843
    735022 7xk7:B (2.9) BS02 RBF 7.2.1.1 GO:0005886 ... A5F5X0 35882843
    735023 7xk7:B (2.9) BS03 IQT 7.2.1.1 GO:0005886 ... A5F5X0 35882843
    735024 7xk7:B (2.9) BS04 FMN 7.2.1.1 GO:0005886 ... A5F5X0 35882843
    735025 7xk7:C (2.9) BS01 FMN 7.2.1.1 GO:0005886 ... A5F5Y7 35882843
    735026 7xk7:D (2.9) BS01 FES 7.2.1.1 GO:0005886 ... A5F5Y6 35882843
    735027 7xk7:E (2.9) BS01 FES 7.2.1.1 GO:0005886 ... A5F5Y5 35882843
    735028 7xk7:F (2.9) BS01 FES 7.2.1.1 GO:0005886 ... A5F5Y4 35882843
    735029 7xk7:F (2.9) BS02 FAD 7.2.1.1 GO:0005886 ... A5F5Y4 35882843
    735030 7xk8:R (3.3) BS01 peptide ? GO:0001607 ... Q9GZQ4 36575163
    735031 7xk9:A (3.4) BS01 GJ6 3.2.1.17 GO:0003796 ... P00720
    P07550
    37059717
    735032 7xka:A (3.1) BS01 G1I 3.2.1.17 GO:0003796 ... P00720
    P07550
    37059717
    735033 7xkd:R (2.4) BS01 AND ? GO:0004888 ... Q8CJ12 35982227
    735034 7xke:R (2.9) BS01 AND ? GO:0004888 ... Q8CJ12 35982227
    735035 7xkf:R (2.4) BS01 AND ? GO:0004888 ... Q8CJ12 35982227
    735036 7xkj:A (3.0) BS01 GDP 3.6.5.2 GO:0003924 ... A0A7J7Z4L6 N/A
    735037 7xkj:A (3.0) BS02 6IC 3.6.5.2 GO:0003924 ... A0A7J7Z4L6 N/A
    735038 7xkp:F (3.0) BS01 MG 7.1.2.2 GO:0005515 ... P07677 36741449
    735039 7xkp:F (3.0) BS02 ADP 7.1.2.2 GO:0005515 ... P07677 36741449
    735040 7xkq:A (3.3) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 36741449
    735041 7xkq:B (3.3) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 36741449
    735042 7xkq:C (3.3) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 36741449
    735043 7xkq:C (3.3) BS02 ADP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 36741449
    735044 7xkq:D (3.3) BS01 MG 7.1.2.2 GO:0005515 ... P07677 36741449
    735045 7xkq:D (3.3) BS02 ADP 7.1.2.2 GO:0005515 ... P07677 36741449
    735046 7xkq:E (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... P07677 36741449
    735047 7xkq:F (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... P07677 36741449
    735048 7xkq:F (3.3) BS02 MG 7.1.2.2 GO:0005515 ... P07677 36741449
    735049 7xkq:H (3.3) BS01 ATP ? GO:0005524 ... A0A0M5MQR7 36741449
    735050 7xkr:A (2.6) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 36741449
    735051 7xkr:B (2.6) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 36741449
    735052 7xkr:C (2.6) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 36741449
    735053 7xkr:D (2.6) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 36741449
    735054 7xkr:E (2.6) BS01 ATP 7.1.2.2 GO:0005515 ... P07677 36741449
    735055 7xkr:F (2.6) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 36741449
    735056 7xks:A (1.78) BS01 CA 4.2.2.2 GO:0000272 ... A0A0P0J4R7 36613981
    735057 7xkt:A (2.2) BS01 Y01 ? GO:0005506 ... P0ABE7
    Q9UKL4
    36906653
    735058 7xkt:B (2.2) BS01 Y01 ? GO:0005506 ... P0ABE7
    Q9UKL4
    36906653
    735059 7xkt:C (2.2) BS01 Y01 ? GO:0005506 ... P0ABE7
    Q9UKL4
    36906653
    735060 7xkt:D (2.2) BS01 Y01 ? GO:0005506 ... P0ABE7
    Q9UKL4
    36906653
    735061 7xkt:E (2.2) BS01 Y01 ? GO:0005506 ... P0ABE7
    Q9UKL4
    36906653
    735062 7xkt:F (2.2) BS01 Y01 ? GO:0005506 ... P0ABE7
    Q9UKL4
    36906653
    735063 7xkt:G (2.2) BS01 Y01 ? GO:0005506 ... P0ABE7
    Q9UKL4
    36906653
    735064 7xkt:H (2.2) BS01 Y01 ? GO:0005506 ... P0ABE7
    Q9UKL4
    36906653
    735065 7xkt:I (2.2) BS01 Y01 ? GO:0005506 ... P0ABE7
    Q9UKL4
    36906653
    735066 7xkt:J (2.2) BS01 Y01 ? GO:0005506 ... P0ABE7
    Q9UKL4
    36906653
    735067 7xkt:K (2.2) BS01 Y01 ? GO:0005506 ... P0ABE7
    Q9UKL4
    36906653
    735068 7xkt:L (2.2) BS01 Y01 ? GO:0005506 ... P0ABE7
    Q9UKL4
    36906653
    735069 7xkw:A (3.1) BS01 FPS N/A GO:0000287 ... N/A 38327006
    735070 7xkw:A (3.1) BS02 MG N/A GO:0000287 ... N/A 38327006
    735071 7xl3:D (3.13) BS01 ZN 2.7.7.6 GO:0000287 ... Q9HWC9 35859063
    735072 7xl3:D (3.13) BS02 ZN 2.7.7.6 GO:0000287 ... Q9HWC9 35859063
    735073 7xl3:D (3.13) BS03 MG 2.7.7.6 GO:0000287 ... Q9HWC9 35859063
    735074 7xl4:D (3.86) BS01 ZN 2.7.7.6 GO:0000287 ... Q9HWC9 35859063
    735075 7xl4:D (3.86) BS02 ZN 2.7.7.6 GO:0000287 ... Q9HWC9 35859063
    735076 7xl4:D (3.86) BS03 MG 2.7.7.6 GO:0000287 ... Q9HWC9 35859063
    735077 7xld:B (1.65) BS01 MG N/A N/A N/A 37330175
    735078 7xlf:A (1.85) BS01 FAD 1.5.1.54 GO:0004489 ... G2IQS8 N/A
    735079 7xlf:A (1.85) BS02 C2F 1.5.1.54 GO:0004489 ... G2IQS8 N/A
    735080 7xlf:B (1.85) BS01 FAD 1.5.1.54 GO:0004489 ... G2IQS8 N/A
    735081 7xlf:B (1.85) BS02 C2F 1.5.1.54 GO:0004489 ... G2IQS8 N/A
    735082 7xli:B (1.7) BS01 CA N/A N/A N/A 37330175
    735083 7xll:A (1.76) BS01 ACT 5.1.1.1 GO:0003824 ... N/A 36732053
    735084 7xll:A (1.76) BS02 ACT 5.1.1.1 GO:0003824 ... N/A 36732053
    735085 7xll:A (1.76) BS03 ACT 5.1.1.1 GO:0003824 ... N/A 36732053
    735086 7xll:A (1.76) BS04 ALA 5.1.1.1 GO:0003824 ... N/A 36732053
    735087 7xll:B (1.76) BS01 ALA 5.1.1.1 GO:0003824 ... N/A 36732053
    735088 7xll:B (1.76) BS02 ACT 5.1.1.1 GO:0003824 ... N/A 36732053
    735089 7xll:B (1.76) BS03 ACT 5.1.1.1 GO:0003824 ... N/A 36732053
    735090 7xlp:A (2.1) BS01 FZC 2.7.12.2 GO:0004672 ... Q02750 36622773
    735091 7xlp:A (2.1) BS02 CA 2.7.12.2 GO:0004672 ... Q02750 36622773
    735092 7xlq:A (3.1) BS01 Y01 ? GO:0005216 ... Q15878 36720859
    735093 7xlq:A (3.1) BS02 Y01 ? GO:0005216 ... Q15878 36720859
    735094 7xlq:A (3.1) BS03 Y01 ? GO:0005216 ... Q15878 36720859
    735095 7xlq:A (3.1) BS04 Y01 ? GO:0005216 ... Q15878 36720859
    735096 7xlq:A (3.1) BS05 Y01 ? GO:0005216 ... Q15878 36720859
    735097 7xlq:A (3.1) BS06 CA ? GO:0005216 ... Q15878 36720859
    735098 7xlq:A (3.1) BS07 Y01 ? GO:0005216 ... Q15878 36720859
    735099 7xlq:D (3.1) BS01 CA ? GO:0005245 ... P54289 36720859
    735100 7xlt:H (4.4) BS01 dna N/A N/A N/A 35550870
    735101 7xlt:H (4.4) BS02 rna N/A N/A N/A 35550870
    735102 7xlz:A (1.19) BS01 FAD N/A GO:0016491 ... N/A 39549339
    735103 7xlz:B (1.19) BS01 FAD N/A GO:0016491 ... N/A 39549339
    735104 7xm0:A (2.6) BS01 dna 3.1.21.4 GO:0003677 ... P16667 37652002
    735105 7xm0:A (2.6) BS02 dna 3.1.21.4 GO:0003677 ... P16667 37652002
    735106 7xm0:A (2.6) BS03 MG 3.1.21.4 GO:0003677 ... P16667 37652002
    735107 7xm0:B (2.6) BS01 dna 3.1.21.4 GO:0003677 ... P16667 37652002
    735108 7xm0:B (2.6) BS02 dna 3.1.21.4 GO:0003677 ... P16667 37652002
    735109 7xm0:B (2.6) BS03 MG 3.1.21.4 GO:0003677 ... P16667 37652002
    735110 7xm0:C (2.6) BS01 dna 3.1.21.4 GO:0003677 ... P16667 37652002
    735111 7xm0:C (2.6) BS02 dna 3.1.21.4 GO:0003677 ... P16667 37652002
    735112 7xm0:C (2.6) BS03 MG 3.1.21.4 GO:0003677 ... P16667 37652002
    735113 7xm2:X (2.3) BS01 GFD ? N/A Q14145 N/A
    735114 7xm2:X (2.3) BS02 GFD ? N/A Q14145 N/A
    735115 7xm3:A (2.8) BS01 GED ? N/A Q14145 N/A
    735116 7xm4:A (2.7) BS01 GDJ ? N/A Q14145 N/A
    735117 7xm5:A (2.4) BS01 GCI ? N/A Q14145 N/A
    735118 7xm7:A (2.36) BS01 GAY 2.3.1.-
    2.3.1.48
    N/A Q92793 N/A
    735119 7xm7:C (2.36) BS01 GAY 2.3.1.-
    2.3.1.48
    N/A Q92793 N/A
    735120 7xm7:D (2.36) BS01 GAY 2.3.1.-
    2.3.1.48
    N/A Q92793 N/A
    735121 7xm9:A (3.22) BS01 G2E ? GO:0001518 ... Q15858 36424527
    735122 7xm9:A (3.22) BS02 6OU ? GO:0001518 ... Q15858 36424527
    735123 7xma:A (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 36481732
    735124 7xma:A (2.2) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 36481732
    735125 7xma:A (2.2) BS03 CU 7.1.1.9 GO:0004129 ... P00396 36481732
    735126 7xma:A (2.2) BS04 MG 7.1.1.9 GO:0004129 ... P00396 36481732
    735127 7xma:B (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P00396
    P68530
    36481732
    735128 7xma:B (2.2) BS02 CUA 7.1.1.9 GO:0004129 ... P00396
    P68530
    36481732
    735129 7xma:C (2.2) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 36481732
    735130 7xma:F (2.2) BS01 ZN ? GO:0005740 ... P00428 36481732
    735131 7xma:J (2.2) BS01 DMU ? GO:0006123 ... P07470 36481732
    735132 7xma:M (2.2) BS01 DMU ? GO:0006123 ... P10175 36481732
    735133 7xma:N (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 36481732
    735134 7xma:N (2.2) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 36481732
    735135 7xma:N (2.2) BS03 CU 7.1.1.9 GO:0004129 ... P00396 36481732
    735136 7xma:N (2.2) BS04 MG 7.1.1.9 GO:0004129 ... P00396 36481732
    735137 7xma:O (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P00396
    P68530
    36481732
    735138 7xma:O (2.2) BS02 CUA 7.1.1.9 GO:0004129 ... P00396
    P68530
    36481732
    735139 7xma:P (2.2) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 36481732
    735140 7xma:S (2.2) BS01 ZN ? GO:0005740 ... P00428 36481732
    735141 7xma:W (2.2) BS01 DMU ? GO:0006123 ... P07470 36481732
    735142 7xma:Z (2.2) BS01 DMU ? GO:0006123 ... P10175 36481732
    735143 7xmb:A (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 36481732
    735144 7xmb:A (2.2) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 36481732
    735145 7xmb:A (2.2) BS03 CU 7.1.1.9 GO:0004129 ... P00396 36481732
    735146 7xmb:A (2.2) BS04 MG 7.1.1.9 GO:0004129 ... P00396 36481732
    735147 7xmb:A (2.2) BS05 J6X 7.1.1.9 GO:0004129 ... P00396 36481732
    735148 7xmb:B (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P00396
    P68530
    36481732
    735149 7xmb:B (2.2) BS02 CUA 7.1.1.9 GO:0004129 ... P00396
    P68530
    36481732
    735150 7xmb:C (2.2) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 36481732
    735151 7xmb:F (2.2) BS01 ZN ? GO:0005740 ... P00428 36481732
    735152 7xmb:J (2.2) BS01 DMU ? GO:0006123 ... P07470 36481732
    735153 7xmb:L (2.2) BS01 J6X ? GO:0006123 ... P00430 36481732
    735154 7xmb:M (2.2) BS01 DMU ? GO:0006123 ... P10175 36481732
    735155 7xmb:N (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 36481732
    735156 7xmb:N (2.2) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 36481732
    735157 7xmb:N (2.2) BS03 CU 7.1.1.9 GO:0004129 ... P00396 36481732
    735158 7xmb:N (2.2) BS04 MG 7.1.1.9 GO:0004129 ... P00396 36481732
    735159 7xmb:N (2.2) BS05 J6X 7.1.1.9 GO:0004129 ... P00396 36481732
    735160 7xmb:O (2.2) BS01 HEA 7.1.1.9 GO:0004129 ... P00396
    P68530
    36481732
    735161 7xmb:O (2.2) BS02 CUA 7.1.1.9 GO:0004129 ... P00396
    P68530
    36481732
    735162 7xmb:P (2.2) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 36481732
    735163 7xmb:S (2.2) BS01 ZN ? GO:0005740 ... P00428 36481732
    735164 7xmb:W (2.2) BS01 DMU ? GO:0006123 ... P07470 36481732
    735165 7xmb:Y (2.2) BS01 J6X ? GO:0006123 ... P00430 36481732
    735166 7xmb:Z (2.2) BS01 DMU ? GO:0006123 ... P10175 36481732
    735167 7xmc:A (3.09) BS01 HEO 7.1.1.3 GO:0004129 ... P0ABI8 36481732
    735168 7xmc:A (3.09) BS02 HEM 7.1.1.3 GO:0004129 ... P0ABI8 36481732
    735169 7xmc:A (3.09) BS03 CU 7.1.1.3 GO:0004129 ... P0ABI8 36481732
    735170 7xmc:B (3.09) BS01 HEO ? GO:0004129 ... P0ABJ1 36481732
    735171 7xmd:A (2.99) BS01 HEO 7.1.1.3 GO:0004129 ... P0ABI8 36481732
    735172 7xmd:A (2.99) BS02 HEM 7.1.1.3 GO:0004129 ... P0ABI8 36481732
    735173 7xmd:A (2.99) BS03 CU 7.1.1.3 GO:0004129 ... P0ABI8 36481732
    735174 7xmd:A (2.99) BS04 JYR 7.1.1.3 GO:0004129 ... P0ABI8 36481732
    735175 7xmd:B (2.99) BS01 HEO ? GO:0004129 ... P0ABJ1 36481732
    735176 7xme:A (2.521) BS01 GIH ? N/A P31345 N/A
    735177 7xme:B (2.521) BS01 GIH ? N/A P31345 N/A
    735178 7xme:C (2.521) BS01 GIH ? N/A P31345 N/A
    735179 7xme:D (2.521) BS01 GIH ? N/A P31345 N/A
    735180 7xmf:A (3.07) BS01 G2W ? GO:0001518 ... Q15858 36424527
    735181 7xmg:A (3.09) BS01 G4I ? GO:0001518 ... Q15858 36424527
    735182 7xmk:A (2.376) BS01 GO4 2.7.11.1 GO:0004672 ... Q13546 38159286
    735183 7xmk:B (2.376) BS01 GO4 2.7.11.1 GO:0004672 ... Q13546 38159286
    735184 7xmn:A (2.3) BS01 GLC ? GO:0005515 ... P0AEX9 37318366
    735185 7xmn:A (2.3) BS02 GLC ? GO:0005515 ... P0AEX9 37318366
    735186 7xmn:B (2.3) BS01 NNH ? GO:0002891 ... P0DTC8 37318366
    735187 7xmr:R (3.1) BS01 peptide ? GO:0004930 ... P30874 35739238
    735188 7xms:R (2.9) BS01 peptide ? GO:0004930 ... P31391 35739238
    735189 7xmt:R (2.8) BS01 I8B ? GO:0004930 ... P31391 35739238
    735190 7xmu:A (2.3) BS01 HSX 2.7.6.1 GO:0000287 ... P0A717 35736577
    735191 7xmu:A (2.3) BS02 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    735192 7xmu:A (2.3) BS03 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    735193 7xmu:A (2.3) BS04 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    735194 7xmu:A (2.3) BS05 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    735195 7xmu:B (2.3) BS01 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    735196 7xmu:B (2.3) BS02 HSX 2.7.6.1 GO:0000287 ... P0A717 35736577
    735197 7xmu:B (2.3) BS03 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    735198 7xmu:B (2.3) BS04 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    735199 7xmu:B (2.3) BS05 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577
    735200 7xmu:C (2.3) BS01 ADP 2.7.6.1 GO:0000287 ... P0A717 35736577

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).