SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    735401 7xnx:LW (2.7) BS01 rna ? GO:0000027 ... P83731 36259929
    735402 7xnx:LW (2.7) BS02 rna ? GO:0000027 ... P83731 36259929
    735403 7xnx:LX (2.7) BS01 rna ? GO:0002181 ... P62750 36259929
    735404 7xnx:LX (2.7) BS02 rna ? GO:0002181 ... P62750 36259929
    735405 7xnx:LY (2.7) BS01 rna ? GO:0002181 ... P61254 36259929
    735406 7xnx:LY (2.7) BS02 rna ? GO:0002181 ... P61254 36259929
    735407 7xnx:LZ (2.7) BS01 rna N/A GO:0003735 ... N/A 36259929
    735408 7xnx:La (2.7) BS01 rna N/A GO:0003735 ... N/A 36259929
    735409 7xnx:Lb (2.7) BS01 rna ? GO:0002181 ... P47914 36259929
    735410 7xnx:Lc (2.7) BS01 rna ? GO:0002181 ... P62888 36259929
    735411 7xnx:Ld (2.7) BS01 rna ? GO:0002181 ... P62899 36259929
    735412 7xnx:Le (2.7) BS01 rna ? GO:0002181 ... P62910 36259929
    735413 7xnx:Le (2.7) BS02 MG ? GO:0002181 ... P62910 36259929
    735414 7xnx:Le (2.7) BS03 MG ? GO:0002181 ... P62910 36259929
    735415 7xnx:Lf (2.7) BS01 rna ? GO:0000049 ... P18077 36259929
    735416 7xnx:Lf (2.7) BS02 MG ? GO:0000049 ... P18077 36259929
    735417 7xnx:Lg (2.7) BS01 rna ? GO:0002181 ... P49207 36259929
    735418 7xnx:Lg (2.7) BS02 ZN ? GO:0002181 ... P49207 36259929
    735419 7xnx:Lh (2.7) BS01 rna ? GO:0000463 ... P42766 36259929
    735420 7xnx:Lh (2.7) BS02 rna ? GO:0000463 ... P42766 36259929
    735421 7xnx:Li (2.7) BS01 rna ? GO:0002181 ... Q9Y3U8 36259929
    735422 7xnx:Lj (2.7) BS01 rna ? GO:0002181 ... P61927 36259929
    735423 7xnx:Lj (2.7) BS02 rna ? GO:0002181 ... P61927 36259929
    735424 7xnx:Lj (2.7) BS03 ZN ? GO:0002181 ... P61927 36259929
    735425 7xnx:Lk (2.7) BS01 rna ? GO:0001501 ... P63173 36259929
    735426 7xnx:Ll (2.7) BS01 rna ? GO:0002181 ... P62891 36259929
    735427 7xnx:Ll (2.7) BS02 rna ? GO:0002181 ... P62891 36259929
    735428 7xnx:Lm (2.7) BS01 rna ? GO:0002181 ... P62987 36259929
    735429 7xnx:Lm (2.7) BS02 ZN ? GO:0002181 ... P62987 36259929
    735430 7xnx:Lo (2.7) BS01 rna ? GO:0003735 ... J3KQN4 36259929
    735431 7xnx:Lo (2.7) BS02 rna ? GO:0003735 ... J3KQN4 36259929
    735432 7xnx:Lo (2.7) BS03 MG ? GO:0003735 ... J3KQN4 36259929
    735433 7xnx:Lo (2.7) BS04 ZN ? GO:0003735 ... J3KQN4 36259929
    735434 7xnx:Lp (2.7) BS01 rna ? GO:0002181 ... P61513 36259929
    735435 7xnx:Lp (2.7) BS02 ZN ? GO:0002181 ... P61513 36259929
    735436 7xnx:Lr (2.7) BS01 rna ? GO:0002181 ... P46779 36259929
    735437 7xnx:SA (2.7) BS01 rna ? GO:0000028 ... P08865 36259929
    735438 7xnx:SB (2.7) BS01 rna ? GO:0002181 ... P61247 36259929
    735439 7xnx:SB (2.7) BS02 rna ? GO:0002181 ... P61247 36259929
    735440 7xnx:SC (2.7) BS01 rna ? GO:0002181 ... P15880 36259929
    735441 7xnx:SD (2.7) BS01 rna 4.2.99.18 GO:0000977 ... P23396 36259929
    735442 7xnx:SE (2.7) BS01 rna ? GO:0002181 ... P62701 36259929
    735443 7xnx:SF (2.7) BS01 rna ? GO:0000028 ... P46782 36259929
    735444 7xnx:SF (2.7) BS02 rna ? GO:0000028 ... P46782 36259929
    735445 7xnx:SG (2.7) BS01 rna ? GO:0000082 ... P62753 36259929
    735446 7xnx:SH (2.7) BS01 rna ? GO:0001843 ... P62081 36259929
    735447 7xnx:SI (2.7) BS01 rna ? GO:0000462 ... P62241 36259929
    735448 7xnx:SI (2.7) BS02 rna ? GO:0000462 ... P62241 36259929
    735449 7xnx:SJ (2.7) BS01 rna ? GO:0002181 ... P46781 36259929
    735450 7xnx:SK (2.7) BS01 rna ? GO:0002181 ... P46783 36259929
    735451 7xnx:SL (2.7) BS01 rna ? GO:0002181 ... P62280 36259929
    735452 7xnx:SM (2.7) BS01 rna ? GO:0002181 ... P25398 36259929
    735453 7xnx:SN (2.7) BS01 rna ? GO:0002181 ... P62277 36259929
    735454 7xnx:SN (2.7) BS02 rna ? GO:0002181 ... P62277 36259929
    735455 7xnx:SO (2.7) BS01 rna ? GO:0000028 ... P62263 36259929
    735456 7xnx:SP (2.7) BS01 rna ? GO:0000028 ... P62841 36259929
    735457 7xnx:SQ (2.7) BS01 rna ? GO:0000462 ... P62249 36259929
    735458 7xnx:SR (2.7) BS01 rna ? GO:0002181 ... P08708 36259929
    735459 7xnx:SS (2.7) BS01 rna ? GO:0002181 ... P62269 36259929
    735460 7xnx:ST (2.7) BS01 rna ? GO:0000028 ... P39019 36259929
    735461 7xnx:SU (2.7) BS01 rna ? GO:0002181 ... P60866 36259929
    735462 7xnx:SW (2.7) BS01 rna ? GO:0002181 ... P62244 36259929
    735463 7xnx:SX (2.7) BS01 rna ? GO:0002181 ... P62266 36259929
    735464 7xnx:SY (2.7) BS01 rna ? GO:0002181 ... P62847 36259929
    735465 7xnx:SZ (2.7) BS01 rna ? GO:0002181 ... P62851 36259929
    735466 7xnx:Sa (2.7) BS01 rna ? GO:0002181 ... P62854 36259929
    735467 7xnx:Sa (2.7) BS02 ZN ? GO:0002181 ... P62854 36259929
    735468 7xnx:Sb (2.7) BS01 rna ? GO:0000028 ... P42677 36259929
    735469 7xnx:Sc (2.7) BS01 rna ? GO:0000028 ... P62857 36259929
    735470 7xnx:Sd (2.7) BS01 rna ? GO:0002181 ... P62273 36259929
    735471 7xnx:Sd (2.7) BS02 MG ? GO:0002181 ... P62273 36259929
    735472 7xnx:Sd (2.7) BS03 ZN ? GO:0002181 ... P62273 36259929
    735473 7xnx:Se (2.7) BS01 rna ? GO:0003735 ... P62861 36259929
    735474 7xnx:Sf (2.7) BS01 rna N/A GO:0003677 ... N/A 36259929
    735475 7xnx:Sf (2.7) BS02 ZN N/A GO:0003677 ... N/A 36259929
    735476 7xnx:Sg (2.7) BS01 rna ? GO:0001891 ... P63244 36259929
    735477 7xny:LA (2.5) BS01 rna ? GO:0002181 ... P62917 36259929
    735478 7xny:LA (2.5) BS02 rna ? GO:0002181 ... P62917 36259929
    735479 7xny:LA (2.5) BS03 MG ? GO:0002181 ... P62917 36259929
    735480 7xny:LA (2.5) BS04 MG ? GO:0002181 ... P62917 36259929
    735481 7xny:LB (2.5) BS01 rna ? GO:0002181 ... P39023 36259929
    735482 7xny:LC (2.5) BS01 rna ? GO:0002181 ... P36578 36259929
    735483 7xny:LC (2.5) BS02 rna ? GO:0002181 ... P36578 36259929
    735484 7xny:LC (2.5) BS03 MG ? GO:0002181 ... P36578 36259929
    735485 7xny:LD (2.5) BS01 rna ? GO:0000027 ... P46777 36259929
    735486 7xny:LD (2.5) BS02 rna ? GO:0000027 ... P46777 36259929
    735487 7xny:LE (2.5) BS01 rna ? GO:0002181 ... Q02878 36259929
    735488 7xny:LF (2.5) BS01 rna ? GO:0000463 ... P18124 36259929
    735489 7xny:LF (2.5) BS02 rna ? GO:0000463 ... P18124 36259929
    735490 7xny:LG (2.5) BS01 rna ? GO:0000470 ... P62424 36259929
    735491 7xny:LG (2.5) BS02 rna ? GO:0000470 ... P62424 36259929
    735492 7xny:LH (2.5) BS01 rna ? GO:0002181 ... P32969 36259929
    735493 7xny:LI (2.5) BS01 rna ? GO:0003735 ... X5D2T3 36259929
    735494 7xny:LI (2.5) BS02 rna ? GO:0003735 ... X5D2T3 36259929
    735495 7xny:LJ (2.5) BS01 rna ? GO:0000027 ... P62913 36259929
    735496 7xny:LJ (2.5) BS02 rna ? GO:0000027 ... P62913 36259929
    735497 7xny:LL (2.5) BS01 rna ? GO:0001824 ... P26373 36259929
    735498 7xny:LL (2.5) BS02 rna ? GO:0001824 ... P26373 36259929
    735499 7xny:LM (2.5) BS01 rna ? GO:0002181 ... P50914 36259929
    735500 7xny:LN (2.5) BS01 rna ? GO:0002181 ... P61313 36259929
    735501 7xny:LN (2.5) BS02 rna ? GO:0002181 ... P61313 36259929
    735502 7xny:LO (2.5) BS01 rna ? GO:0002181 ... P40429 36259929
    735503 7xny:LP (2.5) BS01 rna ? GO:0002181 ... P18621 36259929
    735504 7xny:LP (2.5) BS02 rna ? GO:0002181 ... P18621 36259929
    735505 7xny:LQ (2.5) BS01 rna ? GO:0002181 ... Q07020 36259929
    735506 7xny:LR (2.5) BS01 rna ? GO:0002181 ... P84098 36259929
    735507 7xny:LR (2.5) BS02 rna ? GO:0002181 ... P84098 36259929
    735508 7xny:LR (2.5) BS03 MG ? GO:0002181 ... P84098 36259929
    735509 7xny:LS (2.5) BS01 rna ? GO:0002181 ... Q02543 36259929
    735510 7xny:LS (2.5) BS02 rna ? GO:0002181 ... Q02543 36259929
    735511 7xny:LT (2.5) BS01 rna ? GO:0002181 ... P46778 36259929
    735512 7xny:LT (2.5) BS02 rna ? GO:0002181 ... P46778 36259929
    735513 7xny:LU (2.5) BS01 rna ? GO:0002181 ... P35268 36259929
    735514 7xny:LV (2.5) BS01 rna ? GO:0000122 ... P62829 36259929
    735515 7xny:LW (2.5) BS01 rna ? GO:0000027 ... P83731 36259929
    735516 7xny:LW (2.5) BS02 rna ? GO:0000027 ... P83731 36259929
    735517 7xny:LX (2.5) BS01 rna ? GO:0002181 ... P62750 36259929
    735518 7xny:LX (2.5) BS02 rna ? GO:0002181 ... P62750 36259929
    735519 7xny:LY (2.5) BS01 rna ? GO:0002181 ... P61254 36259929
    735520 7xny:LY (2.5) BS02 rna ? GO:0002181 ... P61254 36259929
    735521 7xny:LZ (2.5) BS01 rna N/A GO:0003735 ... N/A 36259929
    735522 7xny:La (2.5) BS01 rna ? GO:0002181 ... P46776 36259929
    735523 7xny:Lb (2.5) BS01 rna ? GO:0002181 ... P47914 36259929
    735524 7xny:Lc (2.5) BS01 rna ? GO:0002181 ... P62888 36259929
    735525 7xny:Ld (2.5) BS01 rna ? GO:0002181 ... P62899 36259929
    735526 7xny:Le (2.5) BS01 rna ? GO:0002181 ... P62910 36259929
    735527 7xny:Le (2.5) BS02 MG ? GO:0002181 ... P62910 36259929
    735528 7xny:Le (2.5) BS03 MG ? GO:0002181 ... P62910 36259929
    735529 7xny:Lf (2.5) BS01 rna ? GO:0000049 ... P18077 36259929
    735530 7xny:Lf (2.5) BS02 MG ? GO:0000049 ... P18077 36259929
    735531 7xny:Lg (2.5) BS01 rna ? GO:0002181 ... P49207 36259929
    735532 7xny:Lg (2.5) BS02 MG ? GO:0002181 ... P49207 36259929
    735533 7xny:Lg (2.5) BS03 ZN ? GO:0002181 ... P49207 36259929
    735534 7xny:Lh (2.5) BS01 rna ? GO:0000463 ... P42766 36259929
    735535 7xny:Lh (2.5) BS02 rna ? GO:0000463 ... P42766 36259929
    735536 7xny:Li (2.5) BS01 rna ? GO:0002181 ... Q9Y3U8 36259929
    735537 7xny:Lj (2.5) BS01 rna ? GO:0002181 ... P61927 36259929
    735538 7xny:Lj (2.5) BS02 rna ? GO:0002181 ... P61927 36259929
    735539 7xny:Lj (2.5) BS03 ZN ? GO:0002181 ... P61927 36259929
    735540 7xny:Lk (2.5) BS01 rna ? GO:0001501 ... P63173 36259929
    735541 7xny:Ll (2.5) BS01 rna ? GO:0002181 ... P62891 36259929
    735542 7xny:Ll (2.5) BS02 rna ? GO:0002181 ... P62891 36259929
    735543 7xny:Lm (2.5) BS01 rna ? GO:0002181 ... P62987 36259929
    735544 7xny:Lm (2.5) BS02 ZN ? GO:0002181 ... P62987 36259929
    735545 7xny:Lo (2.5) BS01 rna ? GO:0003735 ... J3KQN4 36259929
    735546 7xny:Lo (2.5) BS02 ZN ? GO:0003735 ... J3KQN4 36259929
    735547 7xny:Lp (2.5) BS01 rna ? GO:0002181 ... P61513 36259929
    735548 7xny:Lp (2.5) BS02 ZN ? GO:0002181 ... P61513 36259929
    735549 7xny:Lr (2.5) BS01 rna ? GO:0002181 ... P46779 36259929
    735550 7xny:SA (2.5) BS01 rna ? GO:0000028 ... P08865 36259929
    735551 7xny:SB (2.5) BS01 rna ? GO:0002181 ... P61247 36259929
    735552 7xny:SC (2.5) BS01 rna ? GO:0002181 ... P15880 36259929
    735553 7xny:SD (2.5) BS01 rna 4.2.99.18 GO:0000977 ... P23396 36259929
    735554 7xny:SE (2.5) BS01 rna ? GO:0002181 ... P62701 36259929
    735555 7xny:SF (2.5) BS01 rna ? GO:0000028 ... P46782 36259929
    735556 7xny:SG (2.5) BS01 rna ? GO:0000082 ... P62753 36259929
    735557 7xny:SH (2.5) BS01 rna ? GO:0001843 ... P62081 36259929
    735558 7xny:SI (2.5) BS01 rna ? GO:0000462 ... P62241 36259929
    735559 7xny:SI (2.5) BS02 rna ? GO:0000462 ... P62241 36259929
    735560 7xny:SJ (2.5) BS01 rna ? GO:0002181 ... P46781 36259929
    735561 7xny:SK (2.5) BS01 rna ? GO:0002181 ... P46783 36259929
    735562 7xny:SL (2.5) BS01 rna ? GO:0002181 ... P62280 36259929
    735563 7xny:SL (2.5) BS02 rna ? GO:0002181 ... P62280 36259929
    735564 7xny:SM (2.5) BS01 rna ? GO:0002181 ... P25398 36259929
    735565 7xny:SN (2.5) BS01 rna ? GO:0002181 ... P62277 36259929
    735566 7xny:SO (2.5) BS01 rna ? GO:0000028 ... P62263 36259929
    735567 7xny:SP (2.5) BS01 rna ? GO:0000028 ... P62841 36259929
    735568 7xny:SQ (2.5) BS01 rna ? GO:0000462 ... P62249 36259929
    735569 7xny:SR (2.5) BS01 rna ? GO:0002181 ... P08708 36259929
    735570 7xny:SS (2.5) BS01 rna ? GO:0002181 ... P62269 36259929
    735571 7xny:ST (2.5) BS01 rna ? GO:0000028 ... P39019 36259929
    735572 7xny:SU (2.5) BS01 rna ? GO:0002181 ... P60866 36259929
    735573 7xny:SW (2.5) BS01 rna ? GO:0002181 ... P62244 36259929
    735574 7xny:SX (2.5) BS01 rna ? GO:0002181 ... P62266 36259929
    735575 7xny:SY (2.5) BS01 rna ? GO:0002181 ... P62847 36259929
    735576 7xny:SZ (2.5) BS01 rna ? GO:0002181 ... P62851 36259929
    735577 7xny:Sa (2.5) BS01 rna ? GO:0002181 ... P62854 36259929
    735578 7xny:Sa (2.5) BS02 ZN ? GO:0002181 ... P62854 36259929
    735579 7xny:Sb (2.5) BS01 rna ? GO:0000028 ... P42677 36259929
    735580 7xny:Sc (2.5) BS01 rna ? GO:0000028 ... P62857 36259929
    735581 7xny:Sd (2.5) BS01 rna ? GO:0002181 ... P62273 36259929
    735582 7xny:Sd (2.5) BS02 MG ? GO:0002181 ... P62273 36259929
    735583 7xny:Sd (2.5) BS03 ZN ? GO:0002181 ... P62273 36259929
    735584 7xny:Se (2.5) BS01 rna ? GO:0003735 ... P62861 36259929
    735585 7xny:Sf (2.5) BS01 rna ? GO:0002181 ... P62979 36259929
    735586 7xny:Sf (2.5) BS02 ZN ? GO:0002181 ... P62979 36259929
    735587 7xny:Sg (2.5) BS01 rna ? GO:0001891 ... P63244 36259929
    735588 7xnz:A (3.6) BS01 PLP 4.2.1.22 GO:0000096 ... P9WP51 35749503
    735589 7xnz:B (3.6) BS01 PLP 4.2.1.22 GO:0000096 ... P9WP51 35749503
    735590 7xnz:C (3.6) BS01 PLP 4.2.1.22 GO:0000096 ... P9WP51 35749503
    735591 7xnz:D (3.6) BS01 PLP 4.2.1.22 GO:0000096 ... P9WP51 35749503
    735592 7xo4:D (3.24) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q8R0I0 35641567
    735593 7xo4:E (3.24) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q8R0I0 35641567
    735594 7xo7:E (3.38) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 35641567
    735595 7xo7:F (3.38) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 35641567
    735596 7xo8:D (3.48) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 35641567
    735597 7xo8:E (3.48) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 35641567
    735598 7xo8:F (3.48) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 35641567
    735599 7xo9:D (3.0) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 35641567
    735600 7xog:B (3.5) BS01 MAN ? GO:0016020 ... P0DTC2 37993332

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).