SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    736201 7xr0:A (2.7) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    736202 7xr0:A (2.7) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    736203 7xr0:B (2.7) BS01 GDP ? GO:0000226 ... P02554 N/A
    736204 7xr0:B (2.7) BS02 GWC ? GO:0000226 ... P02554 N/A
    736205 7xr0:C (2.7) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    736206 7xr0:C (2.7) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    736207 7xr0:D (2.7) BS01 GDP ? GO:0000226 ... P02554 N/A
    736208 7xr0:D (2.7) BS02 GWC ? GO:0000226 ... P02554 N/A
    736209 7xr1:A (2.81) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    736210 7xr1:A (2.81) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    736211 7xr1:B (2.81) BS01 GDP ? GO:0000226 ... P02554 N/A
    736212 7xr1:B (2.81) BS02 GY2 ? GO:0000226 ... P02554 N/A
    736213 7xr1:C (2.81) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    736214 7xr1:C (2.81) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    736215 7xr1:D (2.81) BS01 GDP ? GO:0000226 ... P02554 N/A
    736216 7xr1:D (2.81) BS02 GY2 ? GO:0000226 ... P02554 N/A
    736217 7xr4:A (3.4) BS01 GLU ? GO:0005313 ... P43004 35680945
    736218 7xr4:A (3.4) BS02 Y01 ? GO:0005313 ... P43004 35680945
    736219 7xr4:B (3.4) BS01 GLU ? GO:0005313 ... P43004 35680945
    736220 7xr4:B (3.4) BS02 Y01 ? GO:0005313 ... P43004 35680945
    736221 7xr4:C (3.4) BS01 GLU ? GO:0005313 ... P43004 35680945
    736222 7xr4:C (3.4) BS02 Y01 ? GO:0005313 ... P43004 35680945
    736223 7xr5:A (1.58) BS01 NAP N/A GO:0016491 ... N/A 36697820
    736224 7xr5:A (1.58) BS02 9FO N/A GO:0016491 ... N/A 36697820
    736225 7xr5:A (1.58) BS03 9FO N/A GO:0016491 ... N/A 36697820
    736226 7xr5:B (1.58) BS01 9FO N/A GO:0016491 ... N/A 36697820
    736227 7xr5:B (1.58) BS02 NAP N/A GO:0016491 ... N/A 36697820
    736228 7xr5:B (1.58) BS03 9FO N/A GO:0016491 ... N/A 36697820
    736229 7xr5:C (1.58) BS01 9FO N/A GO:0016491 ... N/A 36697820
    736230 7xr5:C (1.58) BS02 NAP N/A GO:0016491 ... N/A 36697820
    736231 7xr5:C (1.58) BS03 9FO N/A GO:0016491 ... N/A 36697820
    736232 7xr5:D (1.58) BS01 9FO N/A GO:0016491 ... N/A 36697820
    736233 7xr5:D (1.58) BS02 NAP N/A GO:0016491 ... N/A 36697820
    736234 7xr5:D (1.58) BS03 9FO N/A GO:0016491 ... N/A 36697820
    736235 7xr6:A (3.4) BS01 GJ0 ? GO:0005313 ... P43004 35680945
    736236 7xr6:A (3.4) BS02 Y01 ? GO:0005313 ... P43004 35680945
    736237 7xr6:A (3.4) BS03 XKJ ? GO:0005313 ... P43004 35680945
    736238 7xr6:B (3.4) BS01 GJ0 ? GO:0005313 ... P43004 35680945
    736239 7xr6:B (3.4) BS02 Y01 ? GO:0005313 ... P43004 35680945
    736240 7xr6:B (3.4) BS03 XKJ ? GO:0005313 ... P43004 35680945
    736241 7xr6:C (3.4) BS01 GJ0 ? GO:0005313 ... P43004 35680945
    736242 7xr6:C (3.4) BS02 Y01 ? GO:0005313 ... P43004 35680945
    736243 7xr6:C (3.4) BS03 XKJ ? GO:0005313 ... P43004 35680945
    736244 7xr7:A (1.63) BS01 FPP ? GO:0016853 ... A0A2P2GK84 36416740
    736245 7xr7:A (1.63) BS02 MG ? GO:0016853 ... A0A2P2GK84 36416740
    736246 7xr7:A (1.63) BS03 MG ? GO:0016853 ... A0A2P2GK84 36416740
    736247 7xr9:A (2.42) BS01 BGC ? GO:0000166 ... A0A3Q9WWX8 36815035
    736248 7xr9:A (2.42) BS02 NAD ? GO:0000166 ... A0A3Q9WWX8 36815035
    736249 7xr9:B (2.42) BS01 NAD ? GO:0000166 ... A0A3Q9WWX8 36815035
    736250 7xr9:C (2.42) BS01 BGC ? GO:0000166 ... A0A3Q9WWX8 36815035
    736251 7xr9:C (2.42) BS02 NAD ? GO:0000166 ... A0A3Q9WWX8 36815035
    736252 7xr9:D (2.42) BS01 BGC ? GO:0000166 ... A0A3Q9WWX8 36815035
    736253 7xr9:D (2.42) BS02 NAD ? GO:0000166 ... A0A3Q9WWX8 36815035
    736254 7xr9:E (2.42) BS01 BGC ? GO:0000166 ... A0A3Q9WWX8 36815035
    736255 7xr9:E (2.42) BS02 NAD ? GO:0000166 ... A0A3Q9WWX8 36815035
    736256 7xr9:F (2.42) BS01 BGC ? GO:0000166 ... A0A3Q9WWX8 36815035
    736257 7xr9:F (2.42) BS02 NAD ? GO:0000166 ... A0A3Q9WWX8 36815035
    736258 7xra:A (1.95) BS01 FPP ? GO:0016853 ... A0A2P2GK84 36416740
    736259 7xra:A (1.95) BS02 MG ? GO:0016853 ... A0A2P2GK84 36416740
    736260 7xrc:C (1.89) BS01 dna ? GO:0000981 ... P20265 36631980
    736261 7xrc:C (1.89) BS02 dna ? GO:0000981 ... P20265 36631980
    736262 7xrd:A (3.9) BS01 MG 3.6.5.2 GO:0001726 ... P62330 N/A
    736263 7xrd:A (3.9) BS02 GTP 3.6.5.2 GO:0001726 ... P62330 N/A
    736264 7xrd:B (3.9) BS01 GTP 3.6.5.2 GO:0001726 ... P62330 N/A
    736265 7xrd:C (3.9) BS01 GTP 3.6.5.2 GO:0001726 ... P62330 N/A
    736266 7xrd:D (3.9) BS01 MG 3.6.5.2 GO:0001726 ... P62330 N/A
    736267 7xrd:D (3.9) BS02 GTP 3.6.5.2 GO:0001726 ... P62330 N/A
    736268 7xre:A (2.76) BS01 NAD ? GO:0000166 ... A0A3Q9WWX8 36815035
    736269 7xre:B (2.76) BS01 NAD ? GO:0000166 ... A0A3Q9WWX8 36815035
    736270 7xre:C (2.76) BS01 NAD ? GO:0000166 ... A0A3Q9WWX8 36815035
    736271 7xre:C (2.76) BS02 NAD ? GO:0000166 ... A0A3Q9WWX8 36815035
    736272 7xre:D (2.76) BS01 NAD ? GO:0000166 ... A0A3Q9WWX8 36815035
    736273 7xre:E (2.76) BS01 NAD ? GO:0000166 ... A0A3Q9WWX8 36815035
    736274 7xre:F (2.76) BS01 NAD ? GO:0000166 ... A0A3Q9WWX8 36815035
    736275 7xrf:A (2.137) BS01 MN ? GO:0046872 ... A0A3Q9WXL1 36815035
    736276 7xrf:C (2.137) BS01 MN ? GO:0046872 ... A0A3Q9WXL1 36815035
    736277 7xrf:E (2.137) BS01 MN ? GO:0046872 ... A0A3Q9WXL1 36815035
    736278 7xrf:G (2.137) BS01 MN ? GO:0046872 ... A0A3Q9WXL1 36815035
    736279 7xrg:A (1.9) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 N/A
    736280 7xrg:A (1.9) BS02 FE 1.16.3.1 GO:0004322 ... T2B7E1 N/A
    736281 7xri:A (2.19) BS01 ZYC 3.1.1.- GO:0016787 ... Q5FI30 37446348
    736282 7xri:B (2.19) BS01 ZYC 3.1.1.- GO:0016787 ... Q5FI30 37446348
    736283 7xri:C (2.19) BS01 ZYC 3.1.1.- GO:0016787 ... Q5FI30 37446348
    736284 7xri:D (2.19) BS01 ZYC 3.1.1.- GO:0016787 ... Q5FI30 37446348
    736285 7xrk:A (2.3) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 35974426
    736286 7xrk:A (2.3) BS02 FWK 4.2.1.28 GO:0003824 ... Q59470 35974426
    736287 7xrk:A (2.3) BS03 B12 4.2.1.28 GO:0003824 ... Q59470 35974426
    736288 7xrk:B (2.3) BS01 B12 4.2.1.28 N/A Q59471 35974426
    736289 7xrk:D (2.3) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 35974426
    736290 7xrk:D (2.3) BS02 FWK 4.2.1.28 GO:0003824 ... Q59470 35974426
    736291 7xrk:D (2.3) BS03 B12 4.2.1.28 GO:0003824 ... Q59470 35974426
    736292 7xrk:E (2.3) BS01 B12 4.2.1.28 N/A Q59471 35974426
    736293 7xrl:A (1.75) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 35974426
    736294 7xrl:A (1.75) BS02 FWK 4.2.1.28 GO:0003824 ... Q59470 35974426
    736295 7xrl:A (1.75) BS03 B12 4.2.1.28 GO:0003824 ... Q59470 35974426
    736296 7xrl:B (1.75) BS01 B12 4.2.1.28 N/A Q59471 35974426
    736297 7xrl:D (1.75) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 35974426
    736298 7xrl:D (1.75) BS02 FWK 4.2.1.28 GO:0003824 ... Q59470 35974426
    736299 7xrl:D (1.75) BS03 B12 4.2.1.28 GO:0003824 ... Q59470 35974426
    736300 7xrl:E (1.75) BS01 B12 4.2.1.28 N/A Q59471 35974426
    736301 7xrm:A (2.13) BS01 FWK 4.3.1.7 GO:0005829 ... P0AEJ6 35974426
    736302 7xrm:A (2.13) BS02 B12 4.3.1.7 GO:0005829 ... P0AEJ6 35974426
    736303 7xrm:B (2.13) BS01 B12 4.3.1.7 GO:0006520 ... P19636 35974426
    736304 7xrm:C (2.13) BS01 FWK 4.3.1.7 GO:0005829 ... P0AEJ6 35974426
    736305 7xrm:C (2.13) BS02 B12 4.3.1.7 GO:0005829 ... P0AEJ6 35974426
    736306 7xrm:D (2.13) BS01 B12 4.3.1.7 GO:0006520 ... P19636 35974426
    736307 7xrn:A (2.07) BS01 FWK 4.3.1.7 GO:0005829 ... P0AEJ6 35974426
    736308 7xrn:A (2.07) BS02 B12 4.3.1.7 GO:0005829 ... P0AEJ6 35974426
    736309 7xrn:B (2.07) BS01 B12 4.3.1.7 GO:0006520 ... P19636 35974426
    736310 7xrn:C (2.07) BS01 FWK 4.3.1.7 GO:0005829 ... P0AEJ6 35974426
    736311 7xrn:C (2.07) BS02 B12 4.3.1.7 GO:0005829 ... P0AEJ6 35974426
    736312 7xrn:D (2.07) BS01 B12 4.3.1.7 GO:0006520 ... P19636 35974426
    736313 7xro:B (2.8) BS01 HCI ? GO:0006355 ... Q9RQ20 N/A
    736314 7xrr:A (2.89) BS01 NRK ? GO:0004930 ... O43614 36417909
    736315 7xrs:A (1.93) BS01 HUR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 36146880
    736316 7xrs:B (1.93) BS01 HUR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 36146880
    736317 7xrt:A (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 37634773
    736318 7xrt:B (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 37634773
    736319 7xrt:C (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 37634773
    736320 7xrt:D (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 37634773
    736321 7xrt:E (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 37634773
    736322 7xrt:F (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 37634773
    736323 7xrt:G (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 37634773
    736324 7xrt:H (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 37634773
    736325 7xrt:I (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 37634773
    736326 7xrt:J (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 37634773
    736327 7xru:A (2.5) BS01 2CF ? GO:0016853 ... A0A2P2GK84 36416740
    736328 7xru:A (2.5) BS02 MG ? GO:0016853 ... A0A2P2GK84 36416740
    736329 7xrv:A (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 39370616
    736330 7xrv:A (2.713) BS02 SZQ ? GO:0016747 ... Q8A0E4 39370616
    736331 7xrv:B (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 39370616
    736332 7xrv:B (2.713) BS02 SZQ ? GO:0016747 ... Q8A0E4 39370616
    736333 7xrv:D (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 39370616
    736334 7xrv:E (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 39370616
    736335 7xrv:E (2.713) BS02 SZQ ? GO:0016747 ... Q8A0E4 39370616
    736336 7xrv:F (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 39370616
    736337 7xrv:F (2.713) BS02 SZQ ? GO:0016747 ... Q8A0E4 39370616
    736338 7xrv:G (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 39370616
    736339 7xrv:G (2.713) BS02 SZQ ? GO:0016747 ... Q8A0E4 39370616
    736340 7xrv:H (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 39370616
    736341 7xrv:H (2.713) BS02 SZQ ? GO:0016747 ... Q8A0E4 39370616
    736342 7xrv:I (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 39370616
    736343 7xrv:I (2.713) BS02 SZQ ? GO:0016747 ... Q8A0E4 39370616
    736344 7xrv:J (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 39370616
    736345 7xrx:A (1.882) BS01 CA ? GO:0030313 ... Q9HW32 N/A
    736346 7xrx:B (1.882) BS01 CA ? GO:0030313 ... Q9HW32 N/A
    736347 7xrx:C (1.882) BS01 CA ? GO:0030313 ... Q9HW32 N/A
    736348 7xry:A (1.99) BS01 HUR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... K9N7C7 36146880
    736349 7xry:B (1.99) BS01 HUR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... K9N7C7 36146880
    736350 7xs0:A (2.59) BS01 peptide 3.4.21.107 GO:0004252 ... O25663 37301353
    736351 7xs3:A (1.9) BS01 XYP N/A GO:0004553 ... N/A 37524130
    736352 7xs3:A (1.9) BS02 XYP N/A GO:0004553 ... N/A 37524130
    736353 7xs3:A (1.9) BS03 XYP N/A GO:0004553 ... N/A 37524130
    736354 7xs3:B (1.9) BS01 XYP N/A GO:0004553 ... N/A 37524130
    736355 7xs3:B (1.9) BS02 XYP N/A GO:0004553 ... N/A 37524130
    736356 7xs3:B (1.9) BS03 XYP N/A GO:0004553 ... N/A 37524130
    736357 7xs4:A (1.846) BS01 rna 2.7.7.52 N/A O64642 36177876
    736358 7xs6:A (2.9) BS01 0V9 2.4.1.16 GO:0000920 ... P08004 36473834
    736359 7xs6:A (2.9) BS02 0V9 2.4.1.16 GO:0000920 ... P08004 36473834
    736360 7xs6:A (2.9) BS03 BGI 2.4.1.16 GO:0000920 ... P08004 36473834
    736361 7xs6:B (2.9) BS01 BGI 2.4.1.16 GO:0000920 ... P08004 36473834
    736362 7xs6:B (2.9) BS02 0V9 2.4.1.16 GO:0000920 ... P08004 36473834
    736363 7xs6:B (2.9) BS03 0V9 2.4.1.16 GO:0000920 ... P08004 36473834
    736364 7xs7:A (3.2) BS01 0V9 2.4.1.16 GO:0000920 ... P08004 36473834
    736365 7xs7:B (3.2) BS01 0V9 2.4.1.16 GO:0000920 ... P08004 36473834
    736366 7xse:A (3.6) BS01 dna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736367 7xse:A (3.6) BS02 rna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736368 7xse:A (3.6) BS03 dna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736369 7xse:A (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736370 7xse:A (3.6) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736371 7xse:A (3.6) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736372 7xse:B (3.6) BS01 dna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736373 7xse:B (3.6) BS02 rna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736374 7xse:B (3.6) BS03 dna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736375 7xse:B (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736376 7xse:C (3.6) BS01 ZN ? GO:0000428 ... C4R7L2 35981082
    736377 7xse:I (3.6) BS01 ZN ? GO:0000428 ... F2QPE6 35981082
    736378 7xse:I (3.6) BS02 ZN ? GO:0000428 ... F2QPE6 35981082
    736379 7xse:J (3.6) BS01 ZN ? GO:0000428 ... C4R009 35981082
    736380 7xse:L (3.6) BS01 ZN ? GO:0001054 ... F2QMI1 35981082
    736381 7xse:M (3.6) BS01 ZN ? GO:0000993 ... C4QZ45 35981082
    736382 7xse:V (3.6) BS01 ZN ? GO:0000775 ... C4R0E6 35981082
    736383 7xse:W (3.6) BS01 dna ? GO:0003711 ... C4R370 35981082
    736384 7xse:a (3.6) BS01 dna ? GO:0000775 ... P84243 35981082
    736385 7xse:a (3.6) BS02 dna ? GO:0000775 ... P84243 35981082
    736386 7xse:b (3.6) BS01 dna ? GO:0000781 ... P62805 35981082
    736387 7xse:b (3.6) BS02 dna ? GO:0000781 ... P62805 35981082
    736388 7xse:c (3.6) BS01 dna ? GO:0000786 ... P04908 35981082
    736389 7xse:c (3.6) BS02 dna ? GO:0000786 ... P04908 35981082
    736390 7xse:d (3.6) BS01 dna ? GO:0000786 ... P06899 35981082
    736391 7xse:e (3.6) BS01 dna ? GO:0000775 ... P84243 35981082
    736392 7xse:e (3.6) BS02 dna ? GO:0000775 ... P84243 35981082
    736393 7xse:f (3.6) BS01 dna ? GO:0000781 ... P62805 35981082
    736394 7xse:m (3.6) BS01 rna ? GO:0003676 ... C4R7H2 35981082
    736395 7xse:u (3.6) BS01 dna ? GO:0005634 ... C4R3K1 35981082
    736396 7xsh:A (1.708) BS01 Z8T ? GO:0004553 ... K1KV82 36570207
    736397 7xsh:B (1.708) BS01 Z8T ? GO:0004553 ... K1KV82 36570207
    736398 7xsj:A (3.2) BS01 peptide ? GO:0000149 ... P61765 36608665
    736399 7xso:A (3.01) BS01 rna ? GO:0051607 ... A0A0B0EGF3 36306795
    736400 7xso:A (3.01) BS02 ZN ? GO:0051607 ... A0A0B0EGF3 36306795

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).