SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    736401 7xso:A (3.01) BS03 ZN ? GO:0051607 ... A0A0B0EGF3 36306795
    736402 7xso:A (3.01) BS04 ZN ? GO:0051607 ... A0A0B0EGF3 36306795
    736403 7xso:A (3.01) BS05 ZN ? GO:0051607 ... A0A0B0EGF3 36306795
    736404 7xsp:B (2.89) BS01 rna ? GO:0051607 ... A0A0B0EGF3 36306795
    736405 7xsp:B (2.89) BS02 rna ? GO:0051607 ... A0A0B0EGF3 36306795
    736406 7xsp:B (2.89) BS03 ZN ? GO:0051607 ... A0A0B0EGF3 36306795
    736407 7xsp:B (2.89) BS04 ZN ? GO:0051607 ... A0A0B0EGF3 36306795
    736408 7xsp:B (2.89) BS05 ZN ? GO:0051607 ... A0A0B0EGF3 36306795
    736409 7xsq:A (2.88) BS01 rna ? GO:0051607 ... A0A0B0EGF3 36306795
    736410 7xsq:A (2.88) BS02 ZN ? GO:0051607 ... A0A0B0EGF3 36306795
    736411 7xsq:A (2.88) BS03 ZN ? GO:0051607 ... A0A0B0EGF3 36306795
    736412 7xsq:A (2.88) BS04 ZN ? GO:0051607 ... A0A0B0EGF3 36306795
    736413 7xsq:A (2.88) BS05 ZN ? GO:0051607 ... A0A0B0EGF3 36306795
    736414 7xsr:B (2.97) BS01 rna ? GO:0051607 ... A0A0B0EGF3 36306795
    736415 7xsr:B (2.97) BS02 rna ? GO:0051607 ... A0A0B0EGF3 36306795
    736416 7xsr:B (2.97) BS03 ZN ? GO:0051607 ... A0A0B0EGF3 36306795
    736417 7xsr:B (2.97) BS04 ZN ? GO:0051607 ... A0A0B0EGF3 36306795
    736418 7xss:B (3.2) BS01 rna ? GO:0051607 ... A0A0B0EGF3 36306795
    736419 7xss:B (3.2) BS02 rna ? GO:0051607 ... A0A0B0EGF3 36306795
    736420 7xss:B (3.2) BS03 ZN ? GO:0051607 ... A0A0B0EGF3 36306795
    736421 7xss:B (3.2) BS04 ZN ? GO:0051607 ... A0A0B0EGF3 36306795
    736422 7xss:B (3.2) BS05 ZN ? GO:0051607 ... A0A0B0EGF3 36306795
    736423 7xss:B (3.2) BS06 ZN ? GO:0051607 ... A0A0B0EGF3 36306795
    736424 7xss:C (3.2) BS01 rna ? N/A A0A0B0EKL4 36306795
    736425 7xsu:A (3.4) BS01 6OU ? GO:0001518 ... B7UCZ6
    P15389
    N/A
    736426 7xsu:A (3.4) BS02 6OU ? GO:0001518 ... B7UCZ6
    P15389
    N/A
    736427 7xsv:A (2.66) BS01 I4M 2.7.11.1 GO:0004672 ... P11309 35779826
    736428 7xsx:A (3.8) BS01 dna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736429 7xsx:A (3.8) BS02 rna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736430 7xsx:A (3.8) BS03 dna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736431 7xsx:A (3.8) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736432 7xsx:A (3.8) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736433 7xsx:A (3.8) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736434 7xsx:B (3.8) BS01 dna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736435 7xsx:B (3.8) BS02 rna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736436 7xsx:B (3.8) BS03 dna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736437 7xsx:B (3.8) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736438 7xsx:C (3.8) BS01 ZN ? GO:0000428 ... C4R7L2 35981082
    736439 7xsx:E (3.8) BS01 dna ? GO:0001054 ... C4R3P8 35981082
    736440 7xsx:I (3.8) BS01 ZN ? GO:0000428 ... F2QPE6 35981082
    736441 7xsx:I (3.8) BS02 ZN ? GO:0000428 ... F2QPE6 35981082
    736442 7xsx:J (3.8) BS01 ZN ? GO:0000428 ... C4R009 35981082
    736443 7xsx:L (3.8) BS01 ZN ? GO:0001054 ... F2QMI1 35981082
    736444 7xsx:M (3.8) BS01 ZN ? GO:0000993 ... C4QZ45 35981082
    736445 7xsx:V (3.8) BS01 ZN ? GO:0000775 ... C4R0E6 35981082
    736446 7xsx:W (3.8) BS01 dna ? GO:0003711 ... C4R370 35981082
    736447 7xsx:a (3.8) BS01 dna ? GO:0000775 ... P84243 35981082
    736448 7xsx:a (3.8) BS02 dna ? GO:0000775 ... P84243 35981082
    736449 7xsx:b (3.8) BS01 dna ? GO:0000781 ... P62805 35981082
    736450 7xsx:b (3.8) BS02 dna ? GO:0000781 ... P62805 35981082
    736451 7xsx:c (3.8) BS01 dna ? GO:0000786 ... P04908 35981082
    736452 7xsx:c (3.8) BS02 dna ? GO:0000786 ... P04908 35981082
    736453 7xsx:d (3.8) BS01 dna ? GO:0000786 ... P06899 35981082
    736454 7xsx:j (3.8) BS01 dna ? GO:0005634 ... C4QYQ8 35981082
    736455 7xsx:m (3.8) BS01 rna ? GO:0003676 ... C4R7H2 35981082
    736456 7xsx:u (3.8) BS01 dna ? GO:0005634 ... C4R3K1 35981082
    736457 7xsz:A (3.4) BS01 dna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736458 7xsz:A (3.4) BS02 rna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736459 7xsz:A (3.4) BS03 dna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736460 7xsz:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736461 7xsz:A (3.4) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736462 7xsz:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736463 7xsz:B (3.4) BS01 dna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736464 7xsz:B (3.4) BS02 rna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736465 7xsz:B (3.4) BS03 dna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736466 7xsz:B (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736467 7xsz:C (3.4) BS01 ZN ? GO:0000428 ... C4R7L2 35981082
    736468 7xsz:E (3.4) BS01 dna ? GO:0001054 ... C4R3P8 35981082
    736469 7xsz:I (3.4) BS01 ZN ? GO:0000428 ... F2QPE6 35981082
    736470 7xsz:I (3.4) BS02 ZN ? GO:0000428 ... F2QPE6 35981082
    736471 7xsz:J (3.4) BS01 ZN ? GO:0000428 ... C4R009 35981082
    736472 7xsz:L (3.4) BS01 ZN ? GO:0001054 ... F2QMI1 35981082
    736473 7xsz:M (3.4) BS01 ZN ? GO:0000993 ... C4QZ45 35981082
    736474 7xsz:V (3.4) BS01 ZN ? GO:0000775 ... C4R0E6 35981082
    736475 7xsz:a (3.4) BS01 dna ? GO:0000775 ... P84243 35981082
    736476 7xsz:a (3.4) BS02 dna ? GO:0000775 ... P84243 35981082
    736477 7xsz:b (3.4) BS01 dna ? GO:0000781 ... P62805 35981082
    736478 7xsz:c (3.4) BS01 dna ? GO:0000786 ... P04908 35981082
    736479 7xsz:c (3.4) BS02 dna ? GO:0000786 ... P04908 35981082
    736480 7xsz:d (3.4) BS01 dna ? GO:0000786 ... P06899 35981082
    736481 7xsz:d (3.4) BS02 dna ? GO:0000786 ... P06899 35981082
    736482 7xsz:e (3.4) BS01 dna ? GO:0000775 ... P84243 35981082
    736483 7xsz:e (3.4) BS02 dna ? GO:0000775 ... P84243 35981082
    736484 7xsz:f (3.4) BS01 dna ? GO:0000781 ... P62805 35981082
    736485 7xsz:f (3.4) BS02 dna ? GO:0000781 ... P62805 35981082
    736486 7xsz:g (3.4) BS01 dna ? GO:0000786 ... P04908 35981082
    736487 7xsz:g (3.4) BS02 dna ? GO:0000786 ... P04908 35981082
    736488 7xsz:h (3.4) BS01 dna ? GO:0000786 ... P06899 35981082
    736489 7xsz:m (3.4) BS01 rna ? GO:0003676 ... C4R7H2 35981082
    736490 7xt2:A (3.0) BS01 ZN ? GO:0001778 ... Q6ZMU5 36944613
    736491 7xt2:A (3.0) BS02 ZN ? GO:0001778 ... Q6ZMU5 36944613
    736492 7xt2:B (3.0) BS01 ZN ? GO:0001778 ... Q6ZMU5 36944613
    736493 7xt2:B (3.0) BS02 ZN ? GO:0001778 ... Q6ZMU5 36944613
    736494 7xt4:B (3.08) BS01 rna ? GO:0051607 ... A0A0B0EGF3 36306795
    736495 7xt4:B (3.08) BS02 rna ? GO:0051607 ... A0A0B0EGF3 36306795
    736496 7xt4:B (3.08) BS03 ZN ? GO:0051607 ... A0A0B0EGF3 36306795
    736497 7xt4:B (3.08) BS04 ZN ? GO:0051607 ... A0A0B0EGF3 36306795
    736498 7xt4:B (3.08) BS05 ZN ? GO:0051607 ... A0A0B0EGF3 36306795
    736499 7xt4:B (3.08) BS06 ZN ? GO:0051607 ... A0A0B0EGF3 36306795
    736500 7xt4:C (3.08) BS01 rna ? N/A A0A0B0EKL4 36306795
    736501 7xt7:A (4.2) BS01 dna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736502 7xt7:A (4.2) BS02 rna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736503 7xt7:A (4.2) BS03 dna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736504 7xt7:A (4.2) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736505 7xt7:A (4.2) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736506 7xt7:A (4.2) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736507 7xt7:B (4.2) BS01 dna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736508 7xt7:B (4.2) BS02 rna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736509 7xt7:B (4.2) BS03 dna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736510 7xt7:B (4.2) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736511 7xt7:C (4.2) BS01 ZN ? GO:0000428 ... C4R7L2 35981082
    736512 7xt7:E (4.2) BS01 dna ? GO:0001054 ... C4R3P8 35981082
    736513 7xt7:I (4.2) BS01 ZN ? GO:0000428 ... F2QPE6 35981082
    736514 7xt7:I (4.2) BS02 ZN ? GO:0000428 ... F2QPE6 35981082
    736515 7xt7:J (4.2) BS01 ZN ? GO:0000428 ... C4R009 35981082
    736516 7xt7:L (4.2) BS01 ZN ? GO:0001054 ... F2QMI1 35981082
    736517 7xt7:M (4.2) BS01 ZN ? GO:0000993 ... C4QZ45 35981082
    736518 7xt7:V (4.2) BS01 ZN ? GO:0000775 ... C4R0E6 35981082
    736519 7xt7:W (4.2) BS01 dna ? GO:0003711 ... C4R370 35981082
    736520 7xt7:a (4.2) BS01 dna ? GO:0000775 ... P84243 35981082
    736521 7xt7:a (4.2) BS02 dna ? GO:0000775 ... P84243 35981082
    736522 7xt7:b (4.2) BS01 dna ? GO:0000781 ... P62805 35981082
    736523 7xt7:b (4.2) BS02 dna ? GO:0000781 ... P62805 35981082
    736524 7xt7:c (4.2) BS01 dna ? GO:0000786 ... P04908 35981082
    736525 7xt7:c (4.2) BS02 dna ? GO:0000786 ... P04908 35981082
    736526 7xt7:d (4.2) BS01 dna ? GO:0000786 ... P06899 35981082
    736527 7xt7:e (4.2) BS01 dna ? GO:0000775 ... P84243 35981082
    736528 7xt7:e (4.2) BS02 dna ? GO:0000775 ... P84243 35981082
    736529 7xt7:f (4.2) BS01 dna ? GO:0000781 ... P62805 35981082
    736530 7xt7:f (4.2) BS02 dna ? GO:0000781 ... P62805 35981082
    736531 7xt7:k (4.2) BS01 dna ? GO:0003677 ... F2QNN8 35981082
    736532 7xt7:m (4.2) BS01 rna ? GO:0003676 ... C4R7H2 35981082
    736533 7xt7:u (4.2) BS01 dna ? GO:0005634 ... C4R3K1 35981082
    736534 7xt8:R (3.1) BS01 CLR ? GO:0004930 ... P0ABE7
    Q13639
    35714614
    736535 7xt8:R (3.1) BS02 CLR ? GO:0004930 ... P0ABE7
    Q13639
    35714614
    736536 7xt8:R (3.1) BS03 CLR ? GO:0004930 ... P0ABE7
    Q13639
    35714614
    736537 7xt8:R (3.1) BS04 SRO ? GO:0004930 ... P0ABE7
    Q13639
    35714614
    736538 7xt9:R (3.2) BS01 CLR ? GO:0004930 ... P0ABE7
    Q13639
    35714614
    736539 7xt9:R (3.2) BS02 CLR ? GO:0004930 ... P0ABE7
    Q13639
    35714614
    736540 7xt9:R (3.2) BS03 CLR ? GO:0004930 ... P0ABE7
    Q13639
    35714614
    736541 7xt9:R (3.2) BS04 SRO ? GO:0004930 ... P0ABE7
    Q13639
    35714614
    736542 7xta:R (3.2) BS01 SRO ? GO:0004930 ... P0ABE7
    Q13639
    35714614
    736543 7xtb:R (3.3) BS01 SRO ? GO:0004930 ... P0ABE7
    P50406
    35714614
    736544 7xtc:R (3.2) BS01 8K3 ? GO:0004930 ... P0ABE7
    P34969
    35714614
    736545 7xtc:R (3.2) BS02 CLR ? GO:0004930 ... P0ABE7
    P34969
    35714614
    736546 7xtd:A (3.9) BS01 dna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736547 7xtd:A (3.9) BS02 rna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736548 7xtd:A (3.9) BS03 dna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736549 7xtd:A (3.9) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736550 7xtd:A (3.9) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736551 7xtd:A (3.9) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736552 7xtd:B (3.9) BS01 dna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736553 7xtd:B (3.9) BS02 rna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736554 7xtd:B (3.9) BS03 dna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736555 7xtd:B (3.9) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736556 7xtd:C (3.9) BS01 ZN ? GO:0000428 ... C4R7L2 35981082
    736557 7xtd:E (3.9) BS01 dna ? GO:0001054 ... C4R3P8 35981082
    736558 7xtd:I (3.9) BS01 ZN ? GO:0000428 ... F2QPE6 35981082
    736559 7xtd:I (3.9) BS02 ZN ? GO:0000428 ... F2QPE6 35981082
    736560 7xtd:J (3.9) BS01 ZN ? GO:0000428 ... C4R009 35981082
    736561 7xtd:L (3.9) BS01 ZN ? GO:0001054 ... F2QMI1 35981082
    736562 7xtd:M (3.9) BS01 ZN ? GO:0000993 ... C4QZ45 35981082
    736563 7xtd:V (3.9) BS01 ZN ? GO:0000775 ... C4R0E6 35981082
    736564 7xtd:W (3.9) BS01 rna ? GO:0003711 ... C4R370 35981082
    736565 7xtd:a (3.9) BS01 dna ? GO:0000775 ... P84243 35981082
    736566 7xtd:a (3.9) BS02 dna ? GO:0000775 ... P84243 35981082
    736567 7xtd:b (3.9) BS01 dna ? GO:0000781 ... P62805 35981082
    736568 7xtd:b (3.9) BS02 dna ? GO:0000781 ... P62805 35981082
    736569 7xtd:c (3.9) BS01 dna ? GO:0000786 ... P04908 35981082
    736570 7xtd:c (3.9) BS02 dna ? GO:0000786 ... P04908 35981082
    736571 7xtd:d (3.9) BS01 dna ? GO:0000786 ... P06899 35981082
    736572 7xtd:d (3.9) BS02 dna ? GO:0000786 ... P06899 35981082
    736573 7xtd:e (3.9) BS01 dna ? GO:0000775 ... P84243 35981082
    736574 7xtd:j (3.9) BS01 dna ? GO:0005634 ... C4QYQ8 35981082
    736575 7xtd:k (3.9) BS01 dna ? GO:0003677 ... F2QNN8 35981082
    736576 7xtd:m (3.9) BS01 rna ? GO:0003676 ... C4R7H2 35981082
    736577 7xtg:D (2.2) BS01 MAN 2.7.1.69 GO:0005886 ... Q38YH6 35703550
    736578 7xtg:E (2.2) BS01 MAN 2.7.1.69 GO:0005886 ... Q38YH5 35703550
    736579 7xtg:H (2.2) BS01 MAN 2.7.1.69 GO:0005886 ... Q38YH6 35703550
    736580 7xtg:I (2.2) BS01 MAN 2.7.1.69 GO:0005886 ... Q38YH5 35703550
    736581 7xtg:Y (2.2) BS01 MAN 2.7.1.69 GO:0005886 ... Q38YH6 35703550
    736582 7xtg:Z (2.2) BS01 MAN 2.7.1.69 GO:0005886 ... Q38YH5 35703550
    736583 7xti:A (3.9) BS01 dna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736584 7xti:A (3.9) BS02 rna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736585 7xti:A (3.9) BS03 dna 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736586 7xti:A (3.9) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736587 7xti:A (3.9) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736588 7xti:A (3.9) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    736589 7xti:B (3.9) BS01 dna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736590 7xti:B (3.9) BS02 rna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736591 7xti:B (3.9) BS03 dna 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736592 7xti:B (3.9) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    736593 7xti:C (3.9) BS01 ZN ? GO:0000428 ... C4R7L2 35981082
    736594 7xti:E (3.9) BS01 dna ? GO:0001054 ... C4R3P8 35981082
    736595 7xti:I (3.9) BS01 ZN ? GO:0000428 ... F2QPE6 35981082
    736596 7xti:I (3.9) BS02 ZN ? GO:0000428 ... F2QPE6 35981082
    736597 7xti:J (3.9) BS01 ZN ? GO:0000428 ... C4R009 35981082
    736598 7xti:L (3.9) BS01 ZN ? GO:0001054 ... F2QMI1 35981082
    736599 7xti:M (3.9) BS01 ZN ? GO:0000993 ... C4QZ45 35981082
    736600 7xti:V (3.9) BS01 ZN ? GO:0000775 ... C4R0E6 35981082

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).