SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    736601 7xti:W (3.9) BS01 rna ? GO:0003711 ... C4R370 35981082
    736602 7xti:W (3.9) BS02 dna ? GO:0003711 ... C4R370 35981082
    736603 7xti:a (3.9) BS01 dna ? GO:0000775 ... P84243 35981082
    736604 7xti:a (3.9) BS02 dna ? GO:0000775 ... P84243 35981082
    736605 7xti:b (3.9) BS01 dna ? GO:0000781 ... P62805 35981082
    736606 7xti:e (3.9) BS01 dna ? GO:0000775 ... P84243 35981082
    736607 7xti:j (3.9) BS01 dna ? GO:0005634 ... C4QYQ8 35981082
    736608 7xti:j (3.9) BS02 dna ? GO:0005634 ... C4QYQ8 35981082
    736609 7xti:k (3.9) BS01 dna ? GO:0003677 ... F2QNN8 35981082
    736610 7xti:k (3.9) BS02 dna ? GO:0003677 ... F2QNN8 35981082
    736611 7xti:m (3.9) BS01 rna ? GO:0003676 ... C4R7H2 35981082
    736612 7xti:u (3.9) BS01 dna ? GO:0005634 ... C4R3K1 35981082
    736613 7xtj:A (2.5) BS01 MAN 3.2.1.37 GO:0004553 ... A0A023J5W7 36877249
    736614 7xtj:B (2.5) BS01 MAN 3.2.1.37 GO:0004553 ... A0A023J5W7 36877249
    736615 7xto:A (2.48) BS01 1DA ? N/A A0A2T0T269 36081280
    736616 7xto:A (2.48) BS02 1DA ? N/A A0A2T0T269 36081280
    736617 7xto:B (2.48) BS01 1DA ? N/A A0A2T0T269 36081280
    736618 7xto:B (2.48) BS02 1DA ? N/A A0A2T0T269 36081280
    736619 7xto:C (2.48) BS01 1DA ? N/A A0A2T0T269 36081280
    736620 7xto:C (2.48) BS02 1DA ? N/A A0A2T0T269 36081280
    736621 7xto:D (2.48) BS01 1DA ? N/A A0A2T0T269 36081280
    736622 7xto:D (2.48) BS02 1DA ? N/A A0A2T0T269 36081280
    736623 7xto:E (2.48) BS01 1DA ? N/A A0A2T0T269 36081280
    736624 7xto:E (2.48) BS02 1DA ? N/A A0A2T0T269 36081280
    736625 7xto:F (2.48) BS01 1DA ? N/A A0A2T0T269 36081280
    736626 7xto:F (2.48) BS02 1DA ? N/A A0A2T0T269 36081280
    736627 7xtp:A (1.828) BS01 MGO ? GO:0000082 ... P06730 35982046
    736628 7xtp:B (1.828) BS01 MGO ? GO:0000082 ... P06730 35982046
    736629 7xtq:R (3.2) BS01 H8I ? GO:0004930 ... Q8TDU6 35858343
    736630 7xtt:B (1.82) BS01 C9C N/A GO:0016787 ... N/A 36964144
    736631 7xtv:A (2.31) BS01 C9C N/A GO:0016787 ... N/A 36964144
    736632 7xtv:B (2.31) BS01 C9C N/A GO:0016787 ... N/A 36964144
    736633 7xtw:A (1.91) BS01 C9C 3.1.1.101 GO:0005576 ... A0A0K8P6T7 36964144
    736634 7xtx:B (1.28) BS01 MT1 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 N/A
    736635 7xty:A (2.1) BS01 peptide 3.1.3.48 N/A Q12923 N/A
    736636 7xty:B (2.1) BS01 peptide 3.1.3.48 N/A Q12923 N/A
    736637 7xtz:A (2.8) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    736638 7xtz:A (2.8) BS02 EIC ? GO:0016020 ... P0DTC2 35905112
    736639 7xtz:A (2.8) BS03 EIC ? GO:0016020 ... P0DTC2 35905112
    736640 7xtz:B (2.8) BS01 EIC ? GO:0016020 ... P0DTC2 35905112
    736641 7xtz:B (2.8) BS02 BLA ? GO:0016020 ... P0DTC2 35905112
    736642 7xtz:B (2.8) BS03 EIC ? GO:0016020 ... P0DTC2 35905112
    736643 7xtz:C (2.8) BS01 EIC ? GO:0016020 ... P0DTC2 35905112
    736644 7xtz:C (2.8) BS02 EIC ? GO:0016020 ... P0DTC2 35905112
    736645 7xtz:C (2.8) BS03 BLA ? GO:0016020 ... P0DTC2 35905112
    736646 7xu0:A (2.9) BS01 EIC ? GO:0016020 ... P0DTC2 35905112
    736647 7xu0:A (2.9) BS02 BLA ? GO:0016020 ... P0DTC2 35905112
    736648 7xu0:A (2.9) BS03 EIC ? GO:0016020 ... P0DTC2 35905112
    736649 7xu0:B (2.9) BS01 EIC ? GO:0016020 ... P0DTC2 35905112
    736650 7xu0:B (2.9) BS02 BLA ? GO:0016020 ... P0DTC2 35905112
    736651 7xu0:C (2.9) BS01 EIC ? GO:0016020 ... P0DTC2 35905112
    736652 7xu0:C (2.9) BS02 BLA ? GO:0016020 ... P0DTC2 35905112
    736653 7xu1:A (3.0) BS01 EIC ? GO:0005515 ... P0DTC2 35905112
    736654 7xu1:A (3.0) BS02 EIC ? GO:0005515 ... P0DTC2 35905112
    736655 7xu1:A (3.0) BS03 BLA ? GO:0005515 ... P0DTC2 35905112
    736656 7xu1:B (3.0) BS01 EIC ? GO:0005515 ... P0DTC2 35905112
    736657 7xu1:B (3.0) BS02 BLA ? GO:0005515 ... P0DTC2 35905112
    736658 7xu1:C (3.0) BS01 BLA ? GO:0005515 ... P0DTC2 35905112
    736659 7xu1:C (3.0) BS02 EIC ? GO:0005515 ... P0DTC2 35905112
    736660 7xu1:C (3.0) BS03 EIC ? GO:0005515 ... P0DTC2 35905112
    736661 7xu2:A (3.2) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    736662 7xu2:A (3.2) BS02 EIC ? GO:0016020 ... P0DTC2 35905112
    736663 7xu2:B (3.2) BS01 EIC ? GO:0016020 ... P0DTC2 35905112
    736664 7xu2:B (3.2) BS02 BLA ? GO:0016020 ... P0DTC2 35905112
    736665 7xu2:C (3.2) BS01 EIC ? GO:0016020 ... P0DTC2 35905112
    736666 7xu2:C (3.2) BS02 BLA ? GO:0016020 ... P0DTC2 35905112
    736667 7xu3:A (3.0) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    736668 7xu3:B (3.0) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    736669 7xu3:C (3.0) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    736670 7xu4:A (3.2) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    736671 7xu4:A (3.2) BS02 EIC ? GO:0016020 ... P0DTC2 35905112
    736672 7xu4:A (3.2) BS03 EIC ? GO:0016020 ... P0DTC2 35905112
    736673 7xu4:B (3.2) BS01 EIC ? GO:0016020 ... P0DTC2 35905112
    736674 7xu4:B (3.2) BS02 EIC ? GO:0016020 ... P0DTC2 35905112
    736675 7xu4:B (3.2) BS03 BLA ? GO:0016020 ... P0DTC2 35905112
    736676 7xu4:C (3.2) BS01 EIC ? GO:0016020 ... P0DTC2 35905112
    736677 7xu4:C (3.2) BS02 BLA ? GO:0016020 ... P0DTC2 35905112
    736678 7xu4:C (3.2) BS03 EIC ? GO:0016020 ... P0DTC2 35905112
    736679 7xu5:A (3.1) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    736680 7xu5:B (3.1) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    736681 7xu5:C (3.1) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    736682 7xu6:A (2.9) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    736683 7xu6:B (2.9) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    736684 7xu6:C (2.9) BS01 BLA ? GO:0016020 ... P0DTC2 35905112
    736685 7xu8:A (2.15) BS01 PEO ? GO:0001818 ... Q9GK12 36188729
    736686 7xu8:B (2.15) BS01 PEO ? GO:0001818 ... Q9GK12 36188729
    736687 7xua:A (1.87) BS01 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736688 7xua:A (1.87) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736689 7xua:A (1.87) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736690 7xua:A (1.87) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736691 7xua:A (1.87) BS05 SFG 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736692 7xua:A (1.87) BS06 I5X 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736693 7xua:B (1.87) BS01 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736694 7xua:B (1.87) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736695 7xua:B (1.87) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736696 7xua:B (1.87) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736697 7xua:B (1.87) BS05 SFG 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736698 7xua:B (1.87) BS06 I5X 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736699 7xub:A (2.0) BS01 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736700 7xub:A (2.0) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736701 7xub:A (2.0) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736702 7xub:A (2.0) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736703 7xub:A (2.0) BS05 SFG 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736704 7xub:A (2.0) BS06 I6L 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736705 7xub:B (2.0) BS01 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736706 7xub:B (2.0) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736707 7xub:B (2.0) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736708 7xub:B (2.0) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736709 7xub:B (2.0) BS05 SFG 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736710 7xub:B (2.0) BS06 I6L 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736711 7xuc:A (1.67) BS01 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736712 7xuc:A (1.67) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736713 7xuc:A (1.67) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736714 7xuc:A (1.67) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736715 7xuc:A (1.67) BS05 SFG 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736716 7xuc:A (1.67) BS06 I6S 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736717 7xuc:B (1.67) BS01 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736718 7xuc:B (1.67) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736719 7xuc:B (1.67) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736720 7xuc:B (1.67) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736721 7xuc:B (1.67) BS05 SFG 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736722 7xuc:B (1.67) BS06 I6S 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736723 7xud:A (1.45) BS01 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736724 7xud:A (1.45) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736725 7xud:A (1.45) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736726 7xud:A (1.45) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736727 7xud:A (1.45) BS05 SFG 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736728 7xud:A (1.45) BS06 I6Z 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736729 7xud:B (1.45) BS01 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736730 7xud:B (1.45) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736731 7xud:B (1.45) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736732 7xud:B (1.45) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736733 7xud:B (1.45) BS05 SFG 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736734 7xud:B (1.45) BS06 I6Z 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 36882960
    736735 7xue:I (3.17) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 35970830
    736736 7xue:I (3.17) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 35970830
    736737 7xue:I (3.17) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 35970830
    736738 7xue:J (3.17) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 35970830
    736739 7xue:J (3.17) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 35970830
    736740 7xue:J (3.17) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 35970830
    736741 7xue:J (3.17) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 35970830
    736742 7xue:J (3.17) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 35970830
    736743 7xue:J (3.17) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 35970830
    736744 7xug:I (3.57) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 35970830
    736745 7xug:I (3.57) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 35970830
    736746 7xug:J (3.57) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 35970830
    736747 7xug:J (3.57) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 35970830
    736748 7xug:J (3.57) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 35970830
    736749 7xug:J (3.57) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 35970830
    736750 7xug:J (3.57) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 35970830
    736751 7xuh:A (2.76) BS01 I2L ? GO:0005452 ... P40879 N/A
    736752 7xuh:A (2.76) BS02 Y01 ? GO:0005452 ... P40879 N/A
    736753 7xuh:A (2.76) BS03 Y01 ? GO:0005452 ... P40879 N/A
    736754 7xuh:A (2.76) BS04 Y01 ? GO:0005452 ... P40879 N/A
    736755 7xuh:B (2.76) BS01 Y01 ? GO:0005452 ... P40879 N/A
    736756 7xuh:B (2.76) BS02 I2L ? GO:0005452 ... P40879 N/A
    736757 7xuh:B (2.76) BS03 Y01 ? GO:0005452 ... P40879 N/A
    736758 7xuh:B (2.76) BS04 Y01 ? GO:0005452 ... P40879 N/A
    736759 7xui:I (3.61) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 35970830
    736760 7xui:I (3.61) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 35970830
    736761 7xui:J (3.61) BS01 rna 2.7.7.6 GO:0000287 ... P0A8T7 35970830
    736762 7xui:J (3.61) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 35970830
    736763 7xui:J (3.61) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 35970830
    736764 7xui:J (3.61) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 35970830
    736765 7xuj:A (2.8) BS01 I2R ? GO:0005452 ... P40879 N/A
    736766 7xuj:A (2.8) BS02 Y01 ? GO:0005452 ... P40879 N/A
    736767 7xuj:B (2.8) BS01 I2R ? GO:0005452 ... P40879 N/A
    736768 7xuj:B (2.8) BS02 Y01 ? GO:0005452 ... P40879 N/A
    736769 7xul:A (3.16) BS01 I2U ? GO:0005452 ... P40879 N/A
    736770 7xul:A (3.16) BS02 Y01 ? GO:0005452 ... P40879 N/A
    736771 7xul:A (3.16) BS03 Y01 ? GO:0005452 ... P40879 N/A
    736772 7xul:A (3.16) BS04 Y01 ? GO:0005452 ... P40879 N/A
    736773 7xul:A (3.16) BS05 Y01 ? GO:0005452 ... P40879 N/A
    736774 7xul:B (3.16) BS01 Y01 ? GO:0005452 ... P40879 N/A
    736775 7xul:B (3.16) BS02 Y01 ? GO:0005452 ... P40879 N/A
    736776 7xul:B (3.16) BS03 I2U ? GO:0005452 ... P40879 N/A
    736777 7xul:B (3.16) BS04 Y01 ? GO:0005452 ... P40879 N/A
    736778 7xul:B (3.16) BS05 Y01 ? GO:0005452 ... P40879 N/A
    736779 7xuq:A (2.5) BS01 I1A ? N/A A2RI36 36130726
    736780 7xur:A (3.49) BS01 dna ? N/A Q5SXM2 36369505
    736781 7xur:A (3.49) BS02 dna ? N/A Q5SXM2 36369505
    736782 7xur:B (3.49) BS01 dna ? GO:0000978 ... Q92966 36369505
    736783 7xur:B (3.49) BS02 dna ? GO:0000978 ... Q92966 36369505
    736784 7xur:B (3.49) BS03 ZN ? GO:0000978 ... Q92966 36369505
    736785 7xur:B (3.49) BS04 ZN ? GO:0000978 ... Q92966 36369505
    736786 7xuv:A (1.6) BS01 peptide ? GO:0003677 ... P27694 37668474
    736787 7xuz:C (3.591) BS01 dna ? GO:0000977 ... Q02078 38281192
    736788 7xuz:D (3.591) BS01 dna ? GO:0000977 ... Q02078 38281192
    736789 7xuz:G (3.591) BS01 dna ? GO:0000977 ... Q02078 38281192
    736790 7xuz:H (3.591) BS01 dna ? GO:0000977 ... Q02078 38281192
    736791 7xuz:H (3.591) BS02 dna ? GO:0000977 ... Q02078 38281192
    736792 7xv0:A (1.5) BS01 peptide ? GO:0003677 ... P27694 37668474
    736793 7xv1:A (1.8) BS01 peptide ? GO:0003677 ... P27694 37668474
    736794 7xv2:A (2.75) BS01 ZN ? GO:0008270 ... Q1XH17 37770719
    736795 7xv2:A (2.75) BS02 ZN ? GO:0008270 ... Q1XH17 37770719
    736796 7xv3:R (2.76) BS01 WJS ? GO:0004930 ... Q9BXC1 36823105
    736797 7xv4:A (1.6) BS01 peptide ? GO:0003677 ... P27694 37668474
    736798 7xv6:A (2.3) BS01 dna ? GO:0003700 ... P49116 36651297
    736799 7xv6:A (2.3) BS02 dna ? GO:0003700 ... P49116 36651297
    736800 7xv6:A (2.3) BS03 ZN ? GO:0003700 ... P49116 36651297

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).