SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    736801 7xv6:A (2.3) BS04 ZN ? GO:0003700 ... P49116 36651297
    736802 7xv6:B (2.3) BS01 dna ? GO:0003700 ... P49116 36651297
    736803 7xv6:B (2.3) BS02 dna ? GO:0003700 ... P49116 36651297
    736804 7xv6:B (2.3) BS03 ZN ? GO:0003700 ... P49116 36651297
    736805 7xv6:B (2.3) BS04 ZN ? GO:0003700 ... P49116 36651297
    736806 7xv8:A (3.199) BS01 dna ? GO:0003700 ... P49116 36651297
    736807 7xv8:A (3.199) BS02 dna ? GO:0003700 ... P49116 36651297
    736808 7xv8:A (3.199) BS03 ZN ? GO:0003700 ... P49116 36651297
    736809 7xv8:A (3.199) BS04 ZN ? GO:0003700 ... P49116 36651297
    736810 7xv8:B (3.199) BS01 dna ? GO:0003700 ... P49116 36651297
    736811 7xv8:B (3.199) BS02 dna ? GO:0003700 ... P49116 36651297
    736812 7xv8:B (3.199) BS03 ZN ? GO:0003700 ... P49116 36651297
    736813 7xv8:B (3.199) BS04 ZN ? GO:0003700 ... P49116 36651297
    736814 7xv9:A (1.599) BS01 ZN ? GO:0003700 ... P49116 36651297
    736815 7xv9:A (1.599) BS02 ZN ? GO:0003700 ... P49116 36651297
    736816 7xv9:B (1.599) BS01 ZN ? GO:0003700 ... P49116 36651297
    736817 7xv9:B (1.599) BS02 ZN ? GO:0003700 ... P49116 36651297
    736818 7xva:A (1.856) BS01 peptide ? N/A P49116 36651297
    736819 7xve:A (2.7) BS01 CLR ? GO:0001518 ... Q15858 35878056
    736820 7xve:A (2.7) BS02 LPE ? GO:0001518 ... Q15858 35878056
    736821 7xve:A (2.7) BS03 LPE ? GO:0001518 ... Q15858 35878056
    736822 7xve:A (2.7) BS04 1PW ? GO:0001518 ... Q15858 35878056
    736823 7xve:A (2.7) BS05 LPE ? GO:0001518 ... Q15858 35878056
    736824 7xve:A (2.7) BS06 LPE ? GO:0001518 ... Q15858 35878056
    736825 7xve:A (2.7) BS07 LPE ? GO:0001518 ... Q15858 35878056
    736826 7xve:A (2.7) BS08 LPE ? GO:0001518 ... Q15858 35878056
    736827 7xve:A (2.7) BS09 LPE ? GO:0001518 ... Q15858 35878056
    736828 7xve:A (2.7) BS10 LPE ? GO:0001518 ... Q15858 35878056
    736829 7xve:A (2.7) BS11 LPE ? GO:0001518 ... Q15858 35878056
    736830 7xve:A (2.7) BS12 CLR ? GO:0001518 ... Q15858 35878056
    736831 7xve:A (2.7) BS13 CLR ? GO:0001518 ... Q15858 35878056
    736832 7xve:A (2.7) BS14 CLR ? GO:0001518 ... Q15858 35878056
    736833 7xve:A (2.7) BS15 LPE ? GO:0001518 ... Q15858 35878056
    736834 7xve:A (2.7) BS16 LPE ? GO:0001518 ... Q15858 35878056
    736835 7xve:A (2.7) BS17 LPE ? GO:0001518 ... Q15858 35878056
    736836 7xve:A (2.7) BS18 P5S ? GO:0001518 ... Q15858 35878056
    736837 7xve:A (2.7) BS19 LPE ? GO:0001518 ... Q15858 35878056
    736838 7xve:B (2.7) BS01 LPE ? GO:0001518 ... Q07699 35878056
    736839 7xve:B (2.7) BS02 LPE ? GO:0001518 ... Q07699 35878056
    736840 7xvf:A (2.8) BS01 Y01 ? GO:0001518 ... Q15858 35878056
    736841 7xvf:A (2.8) BS02 CLR ? GO:0001518 ... Q15858 35878056
    736842 7xvf:A (2.8) BS03 LPE ? GO:0001518 ... Q15858 35878056
    736843 7xvf:A (2.8) BS04 LPE ? GO:0001518 ... Q15858 35878056
    736844 7xvf:A (2.8) BS05 1PW ? GO:0001518 ... Q15858 35878056
    736845 7xvf:A (2.8) BS06 LPE ? GO:0001518 ... Q15858 35878056
    736846 7xvf:A (2.8) BS07 LPE ? GO:0001518 ... Q15858 35878056
    736847 7xvf:A (2.8) BS08 LPE ? GO:0001518 ... Q15858 35878056
    736848 7xvf:A (2.8) BS09 LPE ? GO:0001518 ... Q15858 35878056
    736849 7xvf:A (2.8) BS10 LPE ? GO:0001518 ... Q15858 35878056
    736850 7xvf:A (2.8) BS11 LPE ? GO:0001518 ... Q15858 35878056
    736851 7xvf:A (2.8) BS12 Y01 ? GO:0001518 ... Q15858 35878056
    736852 7xvf:A (2.8) BS13 Y01 ? GO:0001518 ... Q15858 35878056
    736853 7xvf:A (2.8) BS14 Y01 ? GO:0001518 ... Q15858 35878056
    736854 7xvf:A (2.8) BS15 LPE ? GO:0001518 ... Q15858 35878056
    736855 7xvf:A (2.8) BS16 LPE ? GO:0001518 ... Q15858 35878056
    736856 7xvf:A (2.8) BS17 LPE ? GO:0001518 ... Q15858 35878056
    736857 7xvf:A (2.8) BS18 LPE ? GO:0001518 ... Q15858 35878056
    736858 7xvf:B (2.8) BS01 LPE ? GO:0001518 ... Q07699 35878056
    736859 7xvf:B (2.8) BS02 LPE ? GO:0001518 ... Q07699 35878056
    736860 7xvh:A (1.83) BS01 CO 1.13.11.27 GO:0003868 ... P93836 36599124
    736861 7xvh:A (1.83) BS02 92X 1.13.11.27 GO:0003868 ... P93836 36599124
    736862 7xvj:A (2.4) BS01 PO4 2.5.1.-
    3.4.11.17
    GO:0004177 ... D1D8L6 35767141
    736863 7xvj:A (2.4) BS02 PO4 2.5.1.-
    3.4.11.17
    GO:0004177 ... D1D8L6 35767141
    736864 7xvj:B (2.4) BS01 PO4 2.5.1.-
    3.4.11.17
    GO:0004177 ... D1D8L6 35767141
    736865 7xvj:B (2.4) BS02 PO4 2.5.1.-
    3.4.11.17
    GO:0004177 ... D1D8L6 35767141
    736866 7xvj:C (2.4) BS01 PO4 2.5.1.-
    3.4.11.17
    GO:0004177 ... D1D8L6 35767141
    736867 7xvj:C (2.4) BS02 PO4 2.5.1.-
    3.4.11.17
    GO:0004177 ... D1D8L6 35767141
    736868 7xvj:D (2.4) BS01 PO4 2.5.1.-
    3.4.11.17
    GO:0004177 ... D1D8L6 35767141
    736869 7xvj:D (2.4) BS02 PO4 2.5.1.-
    3.4.11.17
    GO:0004177 ... D1D8L6 35767141
    736870 7xvj:D (2.4) BS03 HFI 2.5.1.-
    3.4.11.17
    GO:0004177 ... D1D8L6 35767141
    736871 7xvl:A (3.506) BS01 dna ? GO:0000786 ... P68431 N/A
    736872 7xvl:A (3.506) BS02 dna ? GO:0000786 ... P68431 N/A
    736873 7xvl:B (3.506) BS01 dna ? GO:0000781 ... P62805 N/A
    736874 7xvl:B (3.506) BS02 dna ? GO:0000781 ... P62805 N/A
    736875 7xvl:C (3.506) BS01 dna ? GO:0000786 ... P04908 N/A
    736876 7xvl:C (3.506) BS02 dna ? GO:0000786 ... P04908 N/A
    736877 7xvl:D (3.506) BS01 dna ? GO:0000786 ... P06899 N/A
    736878 7xvl:D (3.506) BS02 dna ? GO:0000786 ... P06899 N/A
    736879 7xvl:E (3.506) BS01 dna ? GO:0000786 ... P68431 N/A
    736880 7xvl:E (3.506) BS02 dna ? GO:0000786 ... P68431 N/A
    736881 7xvl:F (3.506) BS01 dna ? GO:0000781 ... P62805 N/A
    736882 7xvl:F (3.506) BS02 dna ? GO:0000781 ... P62805 N/A
    736883 7xvl:G (3.506) BS01 dna ? GO:0000786 ... P04908 N/A
    736884 7xvl:G (3.506) BS02 dna ? GO:0000786 ... P04908 N/A
    736885 7xvl:H (3.506) BS01 dna ? GO:0000786 ... P06899 N/A
    736886 7xvl:H (3.506) BS02 dna ? GO:0000786 ... P06899 N/A
    736887 7xvl:K (3.506) BS01 dna ? GO:0000786 ... P68431 N/A
    736888 7xvl:K (3.506) BS02 dna ? GO:0000786 ... P68431 N/A
    736889 7xvl:L (3.506) BS01 dna ? GO:0000781 ... P62805 N/A
    736890 7xvl:L (3.506) BS02 dna ? GO:0000781 ... P62805 N/A
    736891 7xvl:M (3.506) BS01 dna ? GO:0000786 ... P04908 N/A
    736892 7xvl:M (3.506) BS02 dna ? GO:0000786 ... P04908 N/A
    736893 7xvl:N (3.506) BS01 dna ? GO:0000786 ... P06899 N/A
    736894 7xvl:N (3.506) BS02 dna ? GO:0000786 ... P06899 N/A
    736895 7xvl:O (3.506) BS01 dna ? GO:0000786 ... P68431 N/A
    736896 7xvl:O (3.506) BS02 dna ? GO:0000786 ... P68431 N/A
    736897 7xvl:P (3.506) BS01 dna ? GO:0000781 ... P62805 N/A
    736898 7xvl:P (3.506) BS02 dna ? GO:0000781 ... P62805 N/A
    736899 7xvl:Q (3.506) BS01 dna ? GO:0000786 ... P04908 N/A
    736900 7xvl:Q (3.506) BS02 dna ? GO:0000786 ... P04908 N/A
    736901 7xvl:R (3.506) BS01 dna ? GO:0000786 ... P06899 N/A
    736902 7xvl:R (3.506) BS02 dna ? GO:0000786 ... P06899 N/A
    736903 7xvl:U (3.506) BS01 dna ? GO:0000786 ... P68431 N/A
    736904 7xvl:U (3.506) BS02 dna ? GO:0000786 ... P68431 N/A
    736905 7xvl:V (3.506) BS01 dna ? GO:0000781 ... P62805 N/A
    736906 7xvl:V (3.506) BS02 dna ? GO:0000781 ... P62805 N/A
    736907 7xvl:W (3.506) BS01 dna ? GO:0000786 ... P04908 N/A
    736908 7xvl:W (3.506) BS02 dna ? GO:0000786 ... P04908 N/A
    736909 7xvl:X (3.506) BS01 dna ? GO:0000786 ... P06899 N/A
    736910 7xvl:X (3.506) BS02 dna ? GO:0000786 ... P06899 N/A
    736911 7xvl:Y (3.506) BS01 dna ? GO:0000786 ... P68431 N/A
    736912 7xvl:Y (3.506) BS02 dna ? GO:0000786 ... P68431 N/A
    736913 7xvl:Z (3.506) BS01 dna ? GO:0000781 ... P62805 N/A
    736914 7xvl:Z (3.506) BS02 dna ? GO:0000781 ... P62805 N/A
    736915 7xvl:a (3.506) BS01 dna ? GO:0000786 ... P04908 N/A
    736916 7xvl:a (3.506) BS02 dna ? GO:0000786 ... P04908 N/A
    736917 7xvl:b (3.506) BS01 dna ? GO:0000786 ... P06899 N/A
    736918 7xvl:b (3.506) BS02 dna ? GO:0000786 ... P06899 N/A
    736919 7xvl:e (3.506) BS01 dna ? GO:0000786 ... P68431 N/A
    736920 7xvl:e (3.506) BS02 dna ? GO:0000786 ... P68431 N/A
    736921 7xvl:f (3.506) BS01 dna ? GO:0000781 ... P62805 N/A
    736922 7xvl:f (3.506) BS02 dna ? GO:0000781 ... P62805 N/A
    736923 7xvl:g (3.506) BS01 dna ? GO:0000786 ... P04908 N/A
    736924 7xvl:g (3.506) BS02 dna ? GO:0000786 ... P04908 N/A
    736925 7xvl:h (3.506) BS01 dna ? GO:0000786 ... P06899 N/A
    736926 7xvl:h (3.506) BS02 dna ? GO:0000786 ... P06899 N/A
    736927 7xvl:i (3.506) BS01 dna ? GO:0000786 ... P68431 N/A
    736928 7xvl:i (3.506) BS02 dna ? GO:0000786 ... P68431 N/A
    736929 7xvl:j (3.506) BS01 dna ? GO:0000781 ... P62805 N/A
    736930 7xvl:j (3.506) BS02 dna ? GO:0000781 ... P62805 N/A
    736931 7xvl:k (3.506) BS01 dna ? GO:0000786 ... P04908 N/A
    736932 7xvl:k (3.506) BS02 dna ? GO:0000786 ... P04908 N/A
    736933 7xvl:l (3.506) BS01 dna ? GO:0000786 ... P06899 N/A
    736934 7xvl:l (3.506) BS02 dna ? GO:0000786 ... P06899 N/A
    736935 7xvl:o (3.506) BS01 dna ? GO:0000785 ... P07305 N/A
    736936 7xvl:o (3.506) BS02 dna ? GO:0000785 ... P07305 N/A
    736937 7xvl:o (3.506) BS03 dna ? GO:0000785 ... P07305 N/A
    736938 7xvm:A (2.84) BS01 dna ? GO:0000786 ... P68431 N/A
    736939 7xvm:A (2.84) BS02 dna ? GO:0000786 ... P68431 N/A
    736940 7xvm:B (2.84) BS01 dna ? GO:0000781 ... P62805 N/A
    736941 7xvm:B (2.84) BS02 dna ? GO:0000781 ... P62805 N/A
    736942 7xvm:C (2.84) BS01 dna ? GO:0000786 ... P04908 N/A
    736943 7xvm:C (2.84) BS02 dna ? GO:0000786 ... P04908 N/A
    736944 7xvm:D (2.84) BS01 dna ? GO:0000786 ... P06899 N/A
    736945 7xvm:D (2.84) BS02 dna ? GO:0000786 ... P06899 N/A
    736946 7xvm:E (2.84) BS01 dna ? GO:0000786 ... P68431 N/A
    736947 7xvm:E (2.84) BS02 dna ? GO:0000786 ... P68431 N/A
    736948 7xvm:F (2.84) BS01 dna ? GO:0000781 ... P62805 N/A
    736949 7xvm:F (2.84) BS02 dna ? GO:0000781 ... P62805 N/A
    736950 7xvm:G (2.84) BS01 dna ? GO:0000786 ... P04908 N/A
    736951 7xvm:G (2.84) BS02 dna ? GO:0000786 ... P04908 N/A
    736952 7xvm:H (2.84) BS01 dna ? GO:0000786 ... P06899 N/A
    736953 7xvm:H (2.84) BS02 dna ? GO:0000786 ... P06899 N/A
    736954 7xvm:K (2.84) BS01 dna ? GO:0000786 ... P68431 N/A
    736955 7xvm:K (2.84) BS02 dna ? GO:0000786 ... P68431 N/A
    736956 7xvm:L (2.84) BS01 dna ? GO:0000781 ... P62805 N/A
    736957 7xvm:L (2.84) BS02 dna ? GO:0000781 ... P62805 N/A
    736958 7xvm:M (2.84) BS01 dna ? GO:0000786 ... P04908 N/A
    736959 7xvm:M (2.84) BS02 dna ? GO:0000786 ... P04908 N/A
    736960 7xvm:N (2.84) BS01 dna ? GO:0000786 ... P06899 N/A
    736961 7xvm:N (2.84) BS02 dna ? GO:0000786 ... P06899 N/A
    736962 7xvm:O (2.84) BS01 dna ? GO:0000786 ... P68431 N/A
    736963 7xvm:O (2.84) BS02 dna ? GO:0000786 ... P68431 N/A
    736964 7xvm:P (2.84) BS01 dna ? GO:0000781 ... P62805 N/A
    736965 7xvm:P (2.84) BS02 dna ? GO:0000781 ... P62805 N/A
    736966 7xvm:Q (2.84) BS01 dna ? GO:0000786 ... P04908 N/A
    736967 7xvm:Q (2.84) BS02 dna ? GO:0000786 ... P04908 N/A
    736968 7xvm:R (2.84) BS01 dna ? GO:0000786 ... P06899 N/A
    736969 7xvm:R (2.84) BS02 dna ? GO:0000786 ... P06899 N/A
    736970 7xvm:U (2.84) BS01 dna ? GO:0000786 ... P02259 N/A
    736971 7xvm:U (2.84) BS02 dna ? GO:0000786 ... P02259 N/A
    736972 7xvm:U (2.84) BS03 dna ? GO:0000786 ... P02259 N/A
    736973 7xvm:V (2.84) BS01 dna ? GO:0000786 ... P02259 N/A
    736974 7xvm:V (2.84) BS02 dna ? GO:0000786 ... P02259 N/A
    736975 7xvn:A (2.302) BS01 dna ? GO:0003700 ... P51450 38309263
    736976 7xvn:A (2.302) BS02 dna ? GO:0003700 ... P51450 38309263
    736977 7xvn:A (2.302) BS03 ZN ? GO:0003700 ... P51450 38309263
    736978 7xvn:A (2.302) BS04 ZN ? GO:0003700 ... P51450 38309263
    736979 7xvn:B (2.302) BS01 dna ? GO:0003700 ... P51450 38309263
    736980 7xvn:B (2.302) BS02 dna ? GO:0003700 ... P51450 38309263
    736981 7xvn:B (2.302) BS03 ZN ? GO:0003700 ... P51450 38309263
    736982 7xvn:B (2.302) BS04 ZN ? GO:0003700 ... P51450 38309263
    736983 7xvn:C (2.302) BS01 dna ? GO:0003700 ... P51450 38309263
    736984 7xvn:C (2.302) BS02 dna ? GO:0003700 ... P51450 38309263
    736985 7xvn:C (2.302) BS03 ZN ? GO:0003700 ... P51450 38309263
    736986 7xvn:C (2.302) BS04 ZN ? GO:0003700 ... P51450 38309263
    736987 7xvn:D (2.302) BS01 dna ? GO:0003700 ... P51450 38309263
    736988 7xvn:D (2.302) BS02 dna ? GO:0003700 ... P51450 38309263
    736989 7xvn:D (2.302) BS03 ZN ? GO:0003700 ... P51450 38309263
    736990 7xvn:D (2.302) BS04 ZN ? GO:0003700 ... P51450 38309263
    736991 7xvr:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... A0A2P1GNP4 36191180
    736992 7xvr:B (2.4) BS01 CA 3.2.1.18 GO:0004308 ... A0A2P1GNP4 36191180
    736993 7xvu:A (1.6) BS01 G39 3.2.1.18 GO:0004308 ... A0A2P1GNP4 36191180
    736994 7xvu:A (1.6) BS02 CA 3.2.1.18 GO:0004308 ... A0A2P1GNP4 36191180
    736995 7xvu:B (1.6) BS01 G39 3.2.1.18 GO:0004308 ... A0A2P1GNP4 36191180
    736996 7xvu:B (1.6) BS02 CA 3.2.1.18 GO:0004308 ... A0A2P1GNP4 36191180
    736997 7xvv:A (1.85) BS01 ZMR 3.2.1.18 GO:0004308 ... A0A2P1GNP4 36191180
    736998 7xvv:A (1.85) BS02 CA 3.2.1.18 GO:0004308 ... A0A2P1GNP4 36191180
    736999 7xvv:B (1.85) BS01 ZMR 3.2.1.18 GO:0004308 ... A0A2P1GNP4 36191180
    737000 7xvv:B (1.85) BS02 CA 3.2.1.18 GO:0004308 ... A0A2P1GNP4 36191180

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).