SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    738001 7y0b:A (2.076) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 N/A
    738002 7y0b:A (2.076) BS02 FAD 1.3.8.1 GO:0003995 ... P16219 N/A
    738003 7y0b:A (2.076) BS03 7R3 1.3.8.1 GO:0003995 ... P16219 N/A
    738004 7y0b:B (2.076) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 N/A
    738005 7y0b:B (2.076) BS02 FAD 1.3.8.1 GO:0003995 ... P16219 N/A
    738006 7y0b:B (2.076) BS03 7R3 1.3.8.1 GO:0003995 ... P16219 N/A
    738007 7y0b:C (2.076) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 N/A
    738008 7y0b:C (2.076) BS02 FAD 1.3.8.1 GO:0003995 ... P16219 N/A
    738009 7y0b:D (2.076) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 N/A
    738010 7y0b:D (2.076) BS02 FAD 1.3.8.1 GO:0003995 ... P16219 N/A
    738011 7y0c:E (2.94) BS01 FUC ? N/A P0DTC2 36493787
    738012 7y0c:R (2.94) BS01 FUC ? N/A P0DTC2 36493787
    738013 7y0e:A (2.39) BS01 CA 3.4.21.122 GO:0016020 ... O15393 37990007
    738014 7y0e:B (2.39) BS01 CA 3.4.21.122 GO:0016020 ... O15393 37990007
    738015 7y0e:C (2.39) BS01 GBS 3.4.21.122 GO:0004252 ... O15393 37990007
    738016 7y0e:D (2.39) BS01 GBS 3.4.21.122 GO:0004252 ... O15393 37990007
    738017 7y0f:A (2.6) BS01 CA 3.4.21.122 GO:0016020 ... O15393 37990007
    738018 7y0f:B (2.6) BS01 CA 3.4.21.122 GO:0016020 ... O15393 37990007
    738019 7y0f:C (2.6) BS01 I9V 3.4.21.122 GO:0004252 ... O15393 37990007
    738020 7y0f:D (2.6) BS01 I9V 3.4.21.122 GO:0004252 ... O15393 37990007
    738021 7y0i:A (-1.00) BS01 peptide 2.1.1.359
    2.1.1.367
    N/A Q9NR48 36033518
    738022 7y0i:A (-1.00) BS02 ZN 2.1.1.359
    2.1.1.367
    N/A Q9NR48 36033518
    738023 7y0i:A (-1.00) BS03 ZN 2.1.1.359
    2.1.1.367
    N/A Q9NR48 36033518
    738024 7y0k:A (3.03) BS01 NDP ? GO:0000166 ... G8B6C8 N/A
    738025 7y0l:A (1.29) BS01 1MM 3.1.1.- GO:0016787 ... G9I933 37468532
    738026 7y0l:A (1.29) BS02 1MM 3.1.1.- GO:0016787 ... G9I933 37468532
    738027 7y0l:B (1.29) BS01 1MM 3.1.1.- GO:0016787 ... G9I933 37468532
    738028 7y0p:A (1.99) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738029 7y0p:A (1.99) BS02 HOA 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738030 7y0p:A (1.99) BS03 PCR 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738031 7y0p:A (1.99) BS04 IC6 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738032 7y0p:A (1.99) BS05 IC6 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738033 7y0p:A (1.99) BS06 PCR 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738034 7y0p:B (1.99) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738035 7y0p:B (1.99) BS02 HOA 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738036 7y0p:B (1.99) BS03 IC6 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738037 7y0p:B (1.99) BS04 IC6 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738038 7y0p:B (1.99) BS05 PCR 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738039 7y0q:A (2.31) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738040 7y0q:A (2.31) BS02 4MN 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738041 7y0q:B (2.31) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738042 7y0r:A (2.09) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738043 7y0r:A (2.09) BS02 HOA 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738044 7y0r:A (2.09) BS03 IC6 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738045 7y0r:A (2.09) BS04 IC6 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738046 7y0r:B (2.09) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738047 7y0r:B (2.09) BS02 IC6 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738048 7y0r:B (2.09) BS03 IC6 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738049 7y0s:A (2.06) BS01 peptide 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738050 7y0s:A (2.06) BS02 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738051 7y0s:A (2.06) BS03 HOA 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738052 7y0s:B (2.06) BS01 peptide 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738053 7y0s:B (2.06) BS02 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738054 7y0s:B (2.06) BS03 HOA 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738055 7y0t:A (1.89) BS01 peptide 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 37713467
    738056 7y0t:A (1.89) BS02 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 37713467
    738057 7y0t:B (1.89) BS01 peptide 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 37713467
    738058 7y0t:B (1.89) BS02 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 37713467
    738059 7y0u:A (2.0) BS01 peptide 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738060 7y0u:A (2.0) BS02 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738061 7y0u:A (2.0) BS03 HOA 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738062 7y0u:B (2.0) BS01 peptide 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738063 7y0u:B (2.0) BS02 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738064 7y0u:B (2.0) BS03 HOA 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    738065 7y0w:H (3.42) BS01 FUC N/A N/A N/A 36493787
    738066 7y0x:A (2.05) BS01 FAD ? GO:0000166 ... A0A125SZC1 37137912
    738067 7y0x:A (2.05) BS02 I55 ? GO:0000166 ... A0A125SZC1 37137912
    738068 7y0x:A (2.05) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    738069 7y0x:B (2.05) BS01 FAD ? GO:0000166 ... A0A125SZC1 37137912
    738070 7y0x:B (2.05) BS02 I55 ? GO:0000166 ... A0A125SZC1 37137912
    738071 7y0x:B (2.05) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    738072 7y0x:B (2.05) BS04 I55 ? GO:0000166 ... A0A125SZC1 37137912
    738073 7y0x:C (2.05) BS01 I55 ? GO:0000166 ... A0A125SZC1 37137912
    738074 7y0x:C (2.05) BS02 FAD ? GO:0000166 ... A0A125SZC1 37137912
    738075 7y0x:C (2.05) BS03 I55 ? GO:0000166 ... A0A125SZC1 37137912
    738076 7y0x:C (2.05) BS04 GLY ? GO:0000166 ... A0A125SZC1 37137912
    738077 7y0x:D (2.05) BS01 FAD ? GO:0000166 ... A0A125SZC1 37137912
    738078 7y0x:D (2.05) BS02 I55 ? GO:0000166 ... A0A125SZC1 37137912
    738079 7y0x:D (2.05) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    738080 7y0x:E (2.05) BS01 FAD ? GO:0000166 ... A0A125SZC1 37137912
    738081 7y0x:E (2.05) BS02 I55 ? GO:0000166 ... A0A125SZC1 37137912
    738082 7y0x:E (2.05) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    738083 7y0x:F (2.05) BS01 FAD ? GO:0000166 ... A0A125SZC1 37137912
    738084 7y0x:F (2.05) BS02 I55 ? GO:0000166 ... A0A125SZC1 37137912
    738085 7y0x:F (2.05) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    738086 7y0x:G (2.05) BS01 I55 ? GO:0000166 ... A0A125SZC1 37137912
    738087 7y0x:G (2.05) BS02 FAD ? GO:0000166 ... A0A125SZC1 37137912
    738088 7y0x:G (2.05) BS03 I55 ? GO:0000166 ... A0A125SZC1 37137912
    738089 7y0x:G (2.05) BS04 GLY ? GO:0000166 ... A0A125SZC1 37137912
    738090 7y0x:H (2.05) BS01 FAD ? GO:0000166 ... A0A125SZC1 37137912
    738091 7y0x:H (2.05) BS02 I55 ? GO:0000166 ... A0A125SZC1 37137912
    738092 7y0x:H (2.05) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    738093 7y10:A (2.1) BS01 PX6 ? N/A Q8GXC6 36716376
    738094 7y10:B (2.1) BS01 PX6 ? N/A Q8GXC6 36716376
    738095 7y11:A (1.95) BS01 D21 ? N/A Q8GXC6 36716376
    738096 7y11:B (1.95) BS01 D21 ? N/A Q8GXC6 36716376
    738097 7y12:R (3.1) BS01 BAL ? GO:0002033 ... P0ABE7
    Q8TDS7
    35840655
    738098 7y14:R (3.2) BS01 BAL ? GO:0002033 ... P0ABE7
    Q8TDS7
    35840655
    738099 7y1a:1 (6.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    738100 7y1a:1 (6.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    738101 7y1a:1 (6.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    738102 7y1a:A (6.3) BS01 PEB N/A N/A N/A 36922595
    738103 7y1a:A (6.3) BS02 PEB N/A N/A N/A 36922595
    738104 7y1a:p (6.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    738105 7y1a:p (6.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    738106 7y1a:p (6.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    738107 7y1a:q (6.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    738108 7y1a:q (6.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    738109 7y1a:q (6.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    738110 7y1a:r (6.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    738111 7y1a:r (6.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    738112 7y1a:s (6.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    738113 7y1a:s (6.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    738114 7y1a:s (6.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    738115 7y1a:t (6.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    738116 7y1a:t (6.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    738117 7y1a:u (6.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    738118 7y1a:u (6.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    738119 7y1a:u (6.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    738120 7y1a:v (6.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    738121 7y1a:v (6.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    738122 7y1a:w (6.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    738123 7y1a:w (6.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    738124 7y1a:w (6.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    738125 7y1a:w (6.3) BS04 PEB ? GO:0009507 ... P11393 36922595
    738126 7y1a:x (6.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    738127 7y1a:x (6.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    738128 7y1a:y (6.3) BS01 PEB ? GO:0009507 ... P11393 36922595
    738129 7y1a:y (6.3) BS02 PEB ? GO:0009507 ... P11393 36922595
    738130 7y1a:y (6.3) BS03 PEB ? GO:0009507 ... P11393 36922595
    738131 7y1a:z (6.3) BS01 PEB ? GO:0009507 ... P11392 36922595
    738132 7y1a:z (6.3) BS02 PEB ? GO:0009507 ... P11392 36922595
    738133 7y1a:z (6.3) BS03 PEB ? GO:0009507 ... P11392 36922595
    738134 7y1f:R (3.3) BS01 peptide ? GO:0004930 ... P41145 37285260
    738135 7y1g:A (2.3) BS01 I5G 2.7.11.11 GO:0000287 ... P17612 35839742
    738136 7y1g:B (2.3) BS01 I5G 2.7.11.11 GO:0000287 ... P17612 35839742
    738137 7y1g:B (2.3) BS02 ZN 2.7.11.11 GO:0000287 ... P17612 35839742
    738138 7y1h:A (1.99) BS01 F99 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 37212275
    738139 7y1h:A (1.99) BS02 ATP 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 37212275
    738140 7y1h:A (1.99) BS03 ZN 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 37212275
    738141 7y1h:B (1.99) BS01 F99 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 37212275
    738142 7y1h:B (1.99) BS02 ATP 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 37212275
    738143 7y1j:A (3.0) BS01 ATP ? GO:0000165 ... Q63563 37330603
    738144 7y1j:A (3.0) BS02 ATP ? GO:0000165 ... Q63563 37330603
    738145 7y1j:A (3.0) BS03 MG ? GO:0000165 ... Q63563 37330603
    738146 7y1j:A (3.0) BS04 BJX ? GO:0000165 ... Q63563 37330603
    738147 7y1k:A (3.8) BS01 ATP ? GO:0000165 ... Q63563 37330603
    738148 7y1k:A (3.8) BS02 MG ? GO:0000165 ... Q63563 37330603
    738149 7y1k:A (3.8) BS03 BJX ? GO:0000165 ... Q63563 37330603
    738150 7y1k:A (3.8) BS04 ADP ? GO:0000165 ... Q63563 37330603
    738151 7y1l:A (3.73) BS01 MG ? GO:0000165 ... Q63563 37330603
    738152 7y1l:A (3.73) BS02 ATP ? GO:0000165 ... Q63563 37330603
    738153 7y1l:A (3.73) BS03 ATP ? GO:0000165 ... Q63563 37330603
    738154 7y1l:A (3.73) BS04 BJX ? GO:0000165 ... Q63563 37330603
    738155 7y1m:A (3.57) BS01 MG ? GO:0000165 ... Q63563 37330603
    738156 7y1m:A (3.57) BS02 ATP ? GO:0000165 ... Q63563 37330603
    738157 7y1m:A (3.57) BS03 BJX ? GO:0000165 ... Q63563 37330603
    738158 7y1m:A (3.57) BS04 ADP ? GO:0000165 ... Q63563 37330603
    738159 7y1n:A (3.61) BS01 ADP ? GO:0000165 ... Q63563 37330603
    738160 7y1n:A (3.61) BS02 MG ? GO:0000165 ... Q63563 37330603
    738161 7y1n:A (3.61) BS03 ATP ? GO:0000165 ... Q63563 37330603
    738162 7y1n:A (3.61) BS04 BJX ? GO:0000165 ... Q63563 37330603
    738163 7y1p:B (2.602) BS01 I5L ? GO:0090090 ... O15169 N/A
    738164 7y1s:A (2.748) BS01 CO3 N/A GO:0005737 ... N/A N/A
    738165 7y1s:A (2.748) BS02 ZN N/A GO:0005737 ... N/A N/A
    738166 7y1s:A (2.748) BS03 ZN N/A GO:0005737 ... N/A N/A
    738167 7y1t:A (3.24) BS01 CA ? GO:0007155 ... P06756 36008481
    738168 7y1t:A (3.24) BS02 CA ? GO:0007155 ... P06756 36008481
    738169 7y1t:A (3.24) BS03 CA ? GO:0007155 ... P06756 36008481
    738170 7y1t:A (3.24) BS04 CA ? GO:0007155 ... P06756 36008481
    738171 7y1t:B (3.24) BS01 CA ? N/A P26012 36008481
    738172 7y1t:B (3.24) BS02 MN ? N/A P26012 36008481
    738173 7y1u:A (2.5) BS01 NAP 1.1.1.42 GO:0000166 ... A0A7M1LFL5 N/A
    738174 7y1u:A (2.5) BS02 MN 1.1.1.42 GO:0000166 ... A0A7M1LFL5 N/A
    738175 7y1w:A (2.5) BS01 ZN 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 37212275
    738176 7y1w:A (2.5) BS02 F9O 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 37212275
    738177 7y1w:A (2.5) BS03 ATP 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 37212275
    738178 7y1w:B (2.5) BS01 ZN 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 37212275
    738179 7y1w:B (2.5) BS02 F9O 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 37212275
    738180 7y24:E (3.25) BS01 peptide ? GO:0004930 ... P30874 36138141
    738181 7y26:E (3.3) BS01 peptide ? GO:0004930 ... P30874 36138141
    738182 7y27:E (3.48) BS01 peptide ? GO:0004930 ... P30874 36138141
    738183 7y28:A (2.29) BS01 F96 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 37212275
    738184 7y28:A (2.29) BS02 ATP 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 37212275
    738185 7y28:A (2.29) BS03 ZN 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 37212275
    738186 7y28:B (2.29) BS01 F96 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 37212275
    738187 7y28:B (2.29) BS02 ATP 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 37212275
    738188 7y2a:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    738189 7y2a:A (1.2) BS02 MNP 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    738190 7y2c:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    738191 7y2d:A (2.0) BS01 IC4 ? GO:0003677 ... P02768 N/A
    738192 7y2d:A (2.0) BS02 IC4 ? GO:0003677 ... P02768 N/A
    738193 7y2e:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    738194 7y2e:A (1.2) BS02 3NT 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    738195 7y2f:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    738196 7y2g:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    738197 7y2g:A (1.2) BS02 BCT 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    738198 7y2h:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    738199 7y2h:A (1.2) BS02 BCT 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    738200 7y2i:A (1.4) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).