SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    738401 7y3f:B (2.62) BS44 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    738402 7y3f:B (2.62) BS45 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    738403 7y3f:B (2.62) BS46 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    738404 7y3f:B (2.62) BS47 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    738405 7y3f:B (2.62) BS48 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    738406 7y3f:B (2.62) BS49 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    738407 7y3f:B (2.62) BS50 CLA 1.97.1.12 GO:0000287 ... P58565 36805598
    738408 7y3f:B (2.62) BS51 PQN 1.97.1.12 GO:0000287 ... P58565 36805598
    738409 7y3f:C (2.62) BS01 SF4 1.97.1.12 GO:0009055 ... P0A410 36805598
    738410 7y3f:C (2.62) BS02 SF4 1.97.1.12 GO:0009055 ... P0A410 36805598
    738411 7y3f:F (2.62) BS01 peptide ? GO:0009522 ... P58564 36805598
    738412 7y3f:F (2.62) BS02 CLA ? GO:0009522 ... P58564 36805598
    738413 7y3f:F (2.62) BS03 CLA ? GO:0009522 ... P58564 36805598
    738414 7y3f:F (2.62) BS04 CLA ? GO:0009522 ... P58564 36805598
    738415 7y3f:F (2.62) BS05 CLA ? GO:0009522 ... P58564 36805598
    738416 7y3f:F (2.62) BS06 CLA ? GO:0009522 ... P58564 36805598
    738417 7y3f:F (2.62) BS07 CLA ? GO:0009522 ... P58564 36805598
    738418 7y3f:F (2.62) BS08 CLA ? GO:0009522 ... P58564 36805598
    738419 7y3f:I (2.62) BS01 CLA ? GO:0009522 ... P58560 36805598
    738420 7y3f:I (2.62) BS02 CLA ? GO:0009522 ... P58560 36805598
    738421 7y3f:I (2.62) BS03 CLA ? GO:0009522 ... P58560 36805598
    738422 7y3f:I (2.62) BS04 CLA ? GO:0009522 ... P58560 36805598
    738423 7y3f:J (2.62) BS01 CLA ? GO:0009522 ... P58568 36805598
    738424 7y3f:J (2.62) BS02 CLA ? GO:0009522 ... P58568 36805598
    738425 7y3f:J (2.62) BS03 CLA ? GO:0009522 ... P58568 36805598
    738426 7y3f:J (2.62) BS04 CLA ? GO:0009522 ... P58568 36805598
    738427 7y3f:J (2.62) BS05 CLA ? GO:0009522 ... P58568 36805598
    738428 7y3f:K (2.62) BS01 CLA N/A N/A N/A 36805598
    738429 7y3f:M (2.62) BS01 CLA ? GO:0009522 ... Q8YNB0 36805598
    738430 7y3f:M (2.62) BS02 CLA ? GO:0009522 ... Q8YNB0 36805598
    738431 7y3h:A (1.97) BS01 SAM N/A GO:0008168 ... N/A N/A
    738432 7y3h:A (1.97) BS02 IAH N/A GO:0008168 ... N/A N/A
    738433 7y3i:A (2.45) BS01 dna ? N/A Q9UJQ4 36257403
    738434 7y3i:A (2.45) BS02 dna ? N/A Q9UJQ4 36257403
    738435 7y3i:A (2.45) BS03 ZN ? N/A Q9UJQ4 36257403
    738436 7y3i:A (2.45) BS04 ZN ? N/A Q9UJQ4 36257403
    738437 7y3i:B (2.45) BS01 dna ? N/A Q9UJQ4 36257403
    738438 7y3i:B (2.45) BS02 dna ? N/A Q9UJQ4 36257403
    738439 7y3i:B (2.45) BS03 dna ? N/A Q9UJQ4 36257403
    738440 7y3i:B (2.45) BS04 ZN ? N/A Q9UJQ4 36257403
    738441 7y3i:B (2.45) BS05 ZN ? N/A Q9UJQ4 36257403
    738442 7y3j:H (2.6) BS01 peptide N/A N/A N/A 35839743
    738443 7y3j:L (2.6) BS01 peptide N/A N/A N/A 35839743
    738444 7y3k:A (2.501) BS01 dna ? N/A Q9UJQ4 36257403
    738445 7y3k:A (2.501) BS02 dna ? N/A Q9UJQ4 36257403
    738446 7y3k:A (2.501) BS03 ZN ? N/A Q9UJQ4 36257403
    738447 7y3k:A (2.501) BS04 ZN ? N/A Q9UJQ4 36257403
    738448 7y3k:B (2.501) BS01 dna ? N/A Q9UJQ4 36257403
    738449 7y3k:B (2.501) BS02 dna ? N/A Q9UJQ4 36257403
    738450 7y3k:B (2.501) BS03 ZN ? N/A Q9UJQ4 36257403
    738451 7y3k:B (2.501) BS04 ZN ? N/A Q9UJQ4 36257403
    738452 7y3l:A (2.5) BS01 dna ? N/A Q9BXA9 36257403
    738453 7y3l:A (2.5) BS02 dna ? N/A Q9BXA9 36257403
    738454 7y3l:A (2.5) BS03 ZN ? N/A Q9BXA9 36257403
    738455 7y3l:A (2.5) BS04 ZN ? N/A Q9BXA9 36257403
    738456 7y3m:A (2.723) BS01 dna ? N/A Q9UJQ4 36257403
    738457 7y3m:A (2.723) BS02 dna ? N/A Q9UJQ4 36257403
    738458 7y3m:A (2.723) BS03 ZN ? N/A Q9UJQ4 36257403
    738459 7y3m:A (2.723) BS04 ZN ? N/A Q9UJQ4 36257403
    738460 7y3m:B (2.723) BS01 dna ? N/A Q9UJQ4 36257403
    738461 7y3m:B (2.723) BS02 dna ? N/A Q9UJQ4 36257403
    738462 7y3m:B (2.723) BS03 ZN ? N/A Q9UJQ4 36257403
    738463 7y3m:B (2.723) BS04 ZN ? N/A Q9UJQ4 36257403
    738464 7y3m:C (2.723) BS01 dna ? N/A Q9UJQ4 36257403
    738465 7y3m:C (2.723) BS02 ZN ? N/A Q9UJQ4 36257403
    738466 7y3m:C (2.723) BS03 ZN ? N/A Q9UJQ4 36257403
    738467 7y3m:F (2.723) BS01 dna ? N/A Q9UJQ4 36257403
    738468 7y3m:F (2.723) BS02 dna ? N/A Q9UJQ4 36257403
    738469 7y3m:F (2.723) BS03 ZN ? N/A Q9UJQ4 36257403
    738470 7y3m:F (2.723) BS04 ZN ? N/A Q9UJQ4 36257403
    738471 7y3m:I (2.723) BS01 dna ? N/A Q9UJQ4 36257403
    738472 7y3m:I (2.723) BS02 dna ? N/A Q9UJQ4 36257403
    738473 7y3m:I (2.723) BS03 ZN ? N/A Q9UJQ4 36257403
    738474 7y3m:I (2.723) BS04 ZN ? N/A Q9UJQ4 36257403
    738475 7y3m:J (2.723) BS01 dna ? N/A Q9UJQ4 36257403
    738476 7y3m:J (2.723) BS02 dna ? N/A Q9UJQ4 36257403
    738477 7y3m:J (2.723) BS03 ZN ? N/A Q9UJQ4 36257403
    738478 7y3m:J (2.723) BS04 ZN ? N/A Q9UJQ4 36257403
    738479 7y3s:A (2.6) BS01 F9C 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 37212275
    738480 7y3s:A (2.6) BS02 ATP 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 37212275
    738481 7y3s:B (2.6) BS01 F9C 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 37212275
    738482 7y3s:B (2.6) BS02 ATP 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 37212275
    738483 7y3s:B (2.6) BS03 ZN 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 37212275
    738484 7y3u:A (2.5) BS01 MH0 1.11.1.7 GO:0004601 ... A0A8B9XNB5 N/A
    738485 7y3u:A (2.5) BS02 CA 1.11.1.7 GO:0004601 ... A0A8B9XNB5 N/A
    738486 7y3u:A (2.5) BS03 NO 1.11.1.7 GO:0004601 ... A0A8B9XNB5 N/A
    738487 7y3u:B (2.5) BS01 MH0 1.11.1.7 GO:0004601 ... A0A8B9XNB5 N/A
    738488 7y3u:B (2.5) BS02 CA 1.11.1.7 GO:0004601 ... A0A8B9XNB5 N/A
    738489 7y3u:B (2.5) BS03 NO 1.11.1.7 GO:0004601 ... A0A8B9XNB5 N/A
    738490 7y3v:A (2.43) BS01 PO4 2.5.1.-
    3.4.11.17
    GO:0004177 ... D1D8L6 35931602
    738491 7y3v:A (2.43) BS02 PO4 2.5.1.-
    3.4.11.17
    GO:0004177 ... D1D8L6 35931602
    738492 7y3v:A (2.43) BS03 CN9 2.5.1.-
    3.4.11.17
    GO:0004177 ... D1D8L6 35931602
    738493 7y3v:B (2.43) BS01 PO4 2.5.1.-
    3.4.11.17
    GO:0004177 ... D1D8L6 35931602
    738494 7y3v:B (2.43) BS02 PO4 2.5.1.-
    3.4.11.17
    GO:0004177 ... D1D8L6 35931602
    738495 7y3v:C (2.43) BS01 PO4 2.5.1.-
    3.4.11.17
    GO:0004177 ... D1D8L6 35931602
    738496 7y3v:C (2.43) BS02 PO4 2.5.1.-
    3.4.11.17
    GO:0004177 ... D1D8L6 35931602
    738497 7y3v:D (2.43) BS01 PO4 2.5.1.-
    3.4.11.17
    GO:0004177 ... D1D8L6 35931602
    738498 7y3v:D (2.43) BS02 PO4 2.5.1.-
    3.4.11.17
    GO:0004177 ... D1D8L6 35931602
    738499 7y3w:A (1.9) BS01 FE N/A GO:0016491 ... N/A 35862137
    738500 7y3w:B (1.9) BS01 FE N/A GO:0016491 ... N/A 35862137
    738501 7y3x:A (2.14) BS01 FE N/A GO:0016491 ... N/A 35862137
    738502 7y3x:B (2.14) BS01 FE N/A GO:0016491 ... N/A 35862137
    738503 7y3y:A (1.92) BS01 FE N/A GO:0016491 ... N/A 35862137
    738504 7y3y:B (1.92) BS01 FE N/A GO:0016491 ... N/A 35862137
    738505 7y41:C (4.1) BS01 rna ? GO:0002181 ... A0QSD4 37709237
    738506 7y41:C (4.1) BS02 MG ? GO:0002181 ... A0QSD4 37709237
    738507 7y41:C (4.1) BS03 MG ? GO:0002181 ... A0QSD4 37709237
    738508 7y41:C (4.1) BS04 MG ? GO:0002181 ... A0QSD4 37709237
    738509 7y41:D (4.1) BS01 rna ? GO:0003735 ... A0QSD1 37709237
    738510 7y41:E (4.1) BS01 rna ? GO:0003735 ... A0QSD2 37709237
    738511 7y41:E (4.1) BS02 MG ? GO:0003735 ... A0QSD2 37709237
    738512 7y41:F (4.1) BS01 rna ? GO:0000049 ... A0QSG1 37709237
    738513 7y41:F (4.1) BS02 rna ? GO:0000049 ... A0QSG1 37709237
    738514 7y41:F (4.1) BS03 MG ? GO:0000049 ... A0QSG1 37709237
    738515 7y41:G (4.1) BS01 rna ? GO:0002181 ... A0QSG4 37709237
    738516 7y41:I (4.1) BS01 rna ? GO:0003735 ... A0QS62 37709237
    738517 7y41:J (4.1) BS01 rna ? GO:0003735 ... A0QS45 37709237
    738518 7y41:K (4.1) BS01 rna ? GO:0003729 ... A0QSP8 37709237
    738519 7y41:L (4.1) BS01 rna ? GO:0003735 ... A0QSF9 37709237
    738520 7y41:M (4.1) BS01 rna ? GO:0003735 ... A0QSG8 37709237
    738521 7y41:N (4.1) BS01 rna ? GO:0000049 ... A0QSD8 37709237
    738522 7y41:N (4.1) BS02 MG ? GO:0000049 ... A0QSD8 37709237
    738523 7y41:N (4.1) BS03 MG ? GO:0000049 ... A0QSD8 37709237
    738524 7y41:O (4.1) BS01 rna ? GO:0003735 ... A0QSL9 37709237
    738525 7y41:P (4.1) BS01 rna ? GO:0003735 ... A0QSG5 37709237
    738526 7y41:P (4.1) BS02 rna ? GO:0003735 ... A0QSG5 37709237
    738527 7y41:Q (4.1) BS01 rna ? GO:0003735 ... A0QV42 37709237
    738528 7y41:R (4.1) BS01 rna ? GO:0000027 ... A0QYU6 37709237
    738529 7y41:S (4.1) BS01 rna ? GO:0003723 ... A0R151 37709237
    738530 7y41:T (4.1) BS01 rna ? GO:0003735 ... A0QSD6 37709237
    738531 7y41:U (4.1) BS01 rna ? GO:0003735 ... A0QSD3 37709237
    738532 7y41:V (4.1) BS01 rna ? GO:0003723 ... A0QSG0 37709237
    738533 7y41:V (4.1) BS02 MG ? GO:0003723 ... A0QSG0 37709237
    738534 7y41:W (4.1) BS01 rna ? GO:0003723 ... A0R3D2 37709237
    738535 7y41:W (4.1) BS02 rna ? GO:0003723 ... A0R3D2 37709237
    738536 7y41:X (4.1) BS01 rna ? GO:0003735 ... A0R150 37709237
    738537 7y41:Y (4.1) BS01 rna ? GO:0003735 ... A0QV03 37709237
    738538 7y41:Y (4.1) BS02 ZN ? GO:0003735 ... A0QV03 37709237
    738539 7y41:Z (4.1) BS01 rna ? GO:0003735 ... A0QSD9 37709237
    738540 7y41:a (4.1) BS01 rna ? GO:0003735 ... A0QSG7 37709237
    738541 7y41:a (4.1) BS02 rna ? GO:0003735 ... A0QSG7 37709237
    738542 7y41:b (4.1) BS01 rna ? GO:0003735 ... A0R3I9 37709237
    738543 7y41:c (4.1) BS01 rna ? GO:0003735 ... A0QS39 37709237
    738544 7y41:c (4.1) BS02 ZN ? GO:0003735 ... A0QS39 37709237
    738545 7y41:d (4.1) BS01 rna ? GO:0003735 ... A0R7K0 37709237
    738546 7y41:e (4.1) BS01 rna ? GO:0003735 ... A0QYU7 37709237
    738547 7y41:f (4.1) BS01 rna ? GO:0003735 ... A0QSL4 37709237
    738548 7y41:f (4.1) BS02 ZN ? GO:0003735 ... A0QSL4 37709237
    738549 7y41:g (4.1) BS01 rna ? GO:0003735 ... A0R215 37709237
    738550 7y41:g (4.1) BS02 ZN ? GO:0003735 ... A0R215 37709237
    738551 7y42:A (3.45) BS01 REA ? GO:0016020 ... P0DTC2 35862773
    738552 7y42:B (3.45) BS01 REA ? GO:0016020 ... P0DTC2 35862773
    738553 7y42:D (3.45) BS01 REA ? GO:0016020 ... P0DTC2 35862773
    738554 7y43:A (1.5) BS01 dna 2.3.1.48 GO:0003677 ... Q92794 36537216
    738555 7y43:A (1.5) BS02 dna 2.3.1.48 GO:0003677 ... Q92794 36537216
    738556 7y44:A (1.9) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 24813624
    738557 7y44:A (1.9) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 24813624
    738558 7y44:A (1.9) BS03 CU 7.1.1.9 GO:0004129 ... P00396 24813624
    738559 7y44:A (1.9) BS04 MG 7.1.1.9 GO:0004129 ... P00396 24813624
    738560 7y44:B (1.9) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 24813624
    738561 7y44:D (1.9) BS01 DMU ? GO:0006123 ... P00423 24813624
    738562 7y44:F (1.9) BS01 ZN ? GO:0005740 ... P00428 24813624
    738563 7y44:G (1.9) BS01 DMU ? GO:0005743 ... P07471 24813624
    738564 7y44:J (1.9) BS01 DMU ? GO:0006123 ... P07470 24813624
    738565 7y44:K (1.9) BS01 DMU ? GO:0006123 ... P13183 24813624
    738566 7y44:K (1.9) BS02 DMU ? GO:0006123 ... P13183 24813624
    738567 7y44:K (1.9) BS03 DMU ? GO:0006123 ... P13183 24813624
    738568 7y44:K (1.9) BS04 DMU ? GO:0006123 ... P13183 24813624
    738569 7y44:L (1.9) BS01 DMU ? GO:0006123 ... P00430 24813624
    738570 7y44:M (1.9) BS01 DMU ? GO:0006123 ... P10175 24813624
    738571 7y44:N (1.9) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 24813624
    738572 7y44:N (1.9) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 24813624
    738573 7y44:N (1.9) BS03 CU 7.1.1.9 GO:0004129 ... P00396 24813624
    738574 7y44:N (1.9) BS04 MG 7.1.1.9 GO:0004129 ... P00396 24813624
    738575 7y44:O (1.9) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 24813624
    738576 7y44:O (1.9) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 24813624
    738577 7y44:O (1.9) BS03 DMU 7.1.1.9 GO:0004129 ... P68530 24813624
    738578 7y44:P (1.9) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 24813624
    738579 7y44:P (1.9) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 24813624
    738580 7y44:P (1.9) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 24813624
    738581 7y44:Q (1.9) BS01 DMU ? GO:0006123 ... P00423 24813624
    738582 7y44:S (1.9) BS01 ZN ? GO:0005740 ... P00428 24813624
    738583 7y44:T (1.9) BS01 DMU ? GO:0005743 ... P07471 24813624
    738584 7y44:W (1.9) BS01 DMU ? GO:0006123 ... P07470 24813624
    738585 7y44:Z (1.9) BS01 DMU ? GO:0006123 ... P10175 24813624
    738586 7y45:A (3.3) BS01 CLR ? GO:0000166 ... Q4H132 35747985
    738587 7y45:A (3.3) BS02 CLR ? GO:0000166 ... Q4H132 35747985
    738588 7y45:B (3.3) BS01 CLR ? GO:0001671 ... C4IX13 35747985
    738589 7y45:C (3.3) BS01 CLR ? GO:0000166 ... Q4H132 35747985
    738590 7y45:C (3.3) BS02 CLR ? GO:0000166 ... Q4H132 35747985
    738591 7y45:D (3.3) BS01 CLR ? GO:0001671 ... C4IX13 35747985
    738592 7y46:A (7.2) BS01 ATP ? GO:0000166 ... Q4H132 35747985
    738593 7y46:A (7.2) BS02 CLR ? GO:0000166 ... Q4H132 35747985
    738594 7y46:A (7.2) BS03 CLR ? GO:0000166 ... Q4H132 35747985
    738595 7y46:B (7.2) BS01 CLR ? GO:0001671 ... C4IX13 35747985
    738596 7y46:B (7.2) BS02 CLR ? GO:0001671 ... C4IX13 35747985
    738597 7y46:C (7.2) BS01 ATP ? GO:0000166 ... Q4H132 35747985
    738598 7y46:C (7.2) BS02 CLR ? GO:0000166 ... Q4H132 35747985
    738599 7y46:C (7.2) BS03 CLR ? GO:0000166 ... Q4H132 35747985
    738600 7y46:D (7.2) BS01 CLR ? GO:0001671 ... C4IX13 35747985

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).