SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    751201 7y7f:S (2.43) BS01 rna ? GO:0000028 ... P0A7U3 37992713
    751202 7y7f:T (2.43) BS01 rna ? GO:0000028 ... P0A7U7 37992713
    751203 7y7f:U (2.43) BS01 rna ? GO:0000028 ... P68679 37992713
    751204 7y7f:c (2.43) BS01 rna ? GO:0000027 ... P60422 37992713
    751205 7y7f:c (2.43) BS02 rna ? GO:0000027 ... P60422 37992713
    751206 7y7f:d (2.43) BS01 rna ? GO:0000027 ... P60438 37992713
    751207 7y7f:e (2.43) BS01 rna ? GO:0001070 ... P60723 37992713
    751208 7y7f:f (2.43) BS01 rna ? GO:0000027 ... P62399 37992713
    751209 7y7f:f (2.43) BS02 rna ? GO:0000027 ... P62399 37992713
    751210 7y7f:f (2.43) BS03 rna ? GO:0000027 ... P62399 37992713
    751211 7y7f:g (2.43) BS01 rna ? GO:0000027 ... P0AG55 37992713
    751212 7y7f:h (2.43) BS01 rna ? GO:0002181 ... P0A7R1 37992713
    751213 7y7f:i (2.43) BS01 rna ? GO:0002181 ... P0AA10 37992713
    751214 7y7f:j (2.43) BS01 rna ? GO:0002181 ... P0ADY3 37992713
    751215 7y7f:j (2.43) BS02 rna ? GO:0002181 ... P0ADY3 37992713
    751216 7y7f:k (2.43) BS01 rna ? GO:0002181 ... P02413 37992713
    751217 7y7f:l (2.43) BS01 rna ? GO:0000027 ... P0ADY7 37992713
    751218 7y7f:l (2.43) BS02 rna ? GO:0000027 ... P0ADY7 37992713
    751219 7y7f:l (2.43) BS03 rna ? GO:0000027 ... P0ADY7 37992713
    751220 7y7f:m (2.43) BS01 rna ? GO:0000027 ... P0AG44 37992713
    751221 7y7f:n (2.43) BS01 rna ? GO:0002181 ... P0C018 37992713
    751222 7y7f:n (2.43) BS02 rna ? GO:0002181 ... P0C018 37992713
    751223 7y7f:o (2.43) BS01 rna ? GO:0000027 ... P0A7K6 37992713
    751224 7y7f:o (2.43) BS02 rna ? GO:0000027 ... P0A7K6 37992713
    751225 7y7f:p (2.43) BS01 rna ? GO:0000027 ... P0A7L3 37992713
    751226 7y7f:q (2.43) BS01 rna ? GO:0002181 ... P0AG48 37992713
    751227 7y7f:r (2.43) BS01 rna ? GO:0002181 ... P61175 37992713
    751228 7y7f:s (2.43) BS01 rna ? GO:0000027 ... P0ADZ0 37992713
    751229 7y7f:t (2.43) BS01 rna ? GO:0000027 ... P60624 37992713
    751230 7y7f:u (2.43) BS01 rna ? GO:0000027 ... P68919 37992713
    751231 7y7f:v (2.43) BS01 rna ? GO:0000027 ... P0A7L8 37992713
    751232 7y7f:v (2.43) BS02 rna ? GO:0000027 ... P0A7L8 37992713
    751233 7y7f:v (2.43) BS03 rna ? GO:0000027 ... P0A7L8 37992713
    751234 7y7f:w (2.43) BS01 rna ? GO:0000027 ... P0A7M2 37992713
    751235 7y7f:x (2.43) BS01 rna ? GO:0000027 ... P0A7M6 37992713
    751236 7y7f:y (2.43) BS01 rna ? GO:0000027 ... P0AG51 37992713
    751237 7y7f:z (2.43) BS01 rna ? GO:0000027 ... P0A7N4 37992713
    751238 7y7g:0 (2.34) BS01 rna ? GO:0000027 ... P0A7N9 37992713
    751239 7y7g:1 (2.34) BS01 rna ? GO:0002181 ... P0A7P5 37992713
    751240 7y7g:2 (2.34) BS01 rna ? GO:0002181 ... P0A7Q1 37992713
    751241 7y7g:3 (2.34) BS01 rna ? GO:0002181 ... P0A7Q6 37992713
    751242 7y7g:4 (2.34) BS01 rna ? GO:0002181 ... P0A7M9 37992713
    751243 7y7g:4 (2.34) BS02 rna ? GO:0002181 ... P0A7M9 37992713
    751244 7y7g:B (2.34) BS01 rna ? GO:0000028 ... P0A7V0 37992713
    751245 7y7g:C (2.34) BS01 rna ? GO:0000028 ... P0A7V3 37992713
    751246 7y7g:D (2.34) BS01 rna ? GO:0000028 ... P0A7V8 37992713
    751247 7y7g:E (2.34) BS01 rna ? GO:0000028 ... P0A7W1 37992713
    751248 7y7g:F (2.34) BS01 rna ? GO:0002181 ... P02358 37992713
    751249 7y7g:G (2.34) BS01 rna ? GO:0000028 ... P02359 37992713
    751250 7y7g:H (2.34) BS01 rna ? GO:0000028 ... P0A7W7 37992713
    751251 7y7g:I (2.34) BS01 rna ? GO:0000049 ... P0A7X3 37992713
    751252 7y7g:I (2.34) BS02 rna ? GO:0000049 ... P0A7X3 37992713
    751253 7y7g:J (2.34) BS01 rna ? GO:0000049 ... P0A7R5 37992713
    751254 7y7g:K (2.34) BS01 rna ? GO:0002181 ... P0A7R9 37992713
    751255 7y7g:L (2.34) BS01 rna ? GO:0000049 ... P0A7S3 37992713
    751256 7y7g:M (2.34) BS01 rna ? GO:0000049 ... P0A7S9 37992713
    751257 7y7g:M (2.34) BS02 rna ? GO:0000049 ... P0A7S9 37992713
    751258 7y7g:N (2.34) BS01 rna ? GO:0000028 ... P0AG59 37992713
    751259 7y7g:O (2.34) BS01 rna ? GO:0000028 ... P0ADZ4 37992713
    751260 7y7g:O (2.34) BS02 rna ? GO:0000028 ... P0ADZ4 37992713
    751261 7y7g:P (2.34) BS01 rna ? GO:0000028 ... P0A7T3 37992713
    751262 7y7g:Q (2.34) BS01 rna ? GO:0000028 ... P0AG63 37992713
    751263 7y7g:R (2.34) BS01 rna ? GO:0002181 ... P0A7T7 37992713
    751264 7y7g:S (2.34) BS01 rna ? GO:0000028 ... P0A7U3 37992713
    751265 7y7g:T (2.34) BS01 rna ? GO:0000028 ... P0A7U7 37992713
    751266 7y7g:U (2.34) BS01 rna ? GO:0000028 ... P68679 37992713
    751267 7y7g:c (2.34) BS01 rna ? GO:0000027 ... P60422 37992713
    751268 7y7g:d (2.34) BS01 rna ? GO:0000027 ... P60438 37992713
    751269 7y7g:e (2.34) BS01 rna ? GO:0001070 ... P60723 37992713
    751270 7y7g:f (2.34) BS01 rna ? GO:0000027 ... P62399 37992713
    751271 7y7g:f (2.34) BS02 rna ? GO:0000027 ... P62399 37992713
    751272 7y7g:f (2.34) BS03 rna ? GO:0000027 ... P62399 37992713
    751273 7y7g:g (2.34) BS01 rna ? GO:0000027 ... P0AG55 37992713
    751274 7y7g:h (2.34) BS01 rna ? GO:0002181 ... P0A7R1 37992713
    751275 7y7g:i (2.34) BS01 rna ? GO:0002181 ... P0AA10 37992713
    751276 7y7g:j (2.34) BS01 rna ? GO:0002181 ... P0ADY3 37992713
    751277 7y7g:j (2.34) BS02 rna ? GO:0002181 ... P0ADY3 37992713
    751278 7y7g:k (2.34) BS01 rna ? GO:0002181 ... P02413 37992713
    751279 7y7g:l (2.34) BS01 rna ? GO:0000027 ... P0ADY7 37992713
    751280 7y7g:l (2.34) BS02 rna ? GO:0000027 ... P0ADY7 37992713
    751281 7y7g:l (2.34) BS03 rna ? GO:0000027 ... P0ADY7 37992713
    751282 7y7g:m (2.34) BS01 rna ? GO:0000027 ... P0AG44 37992713
    751283 7y7g:n (2.34) BS01 rna ? GO:0002181 ... P0C018 37992713
    751284 7y7g:n (2.34) BS02 rna ? GO:0002181 ... P0C018 37992713
    751285 7y7g:o (2.34) BS01 rna ? GO:0000027 ... P0A7K6 37992713
    751286 7y7g:o (2.34) BS02 rna ? GO:0000027 ... P0A7K6 37992713
    751287 7y7g:p (2.34) BS01 rna ? GO:0000027 ... P0A7L3 37992713
    751288 7y7g:q (2.34) BS01 rna ? GO:0002181 ... P0AG48 37992713
    751289 7y7g:r (2.34) BS01 rna ? GO:0002181 ... P61175 37992713
    751290 7y7g:s (2.34) BS01 rna ? GO:0000027 ... P0ADZ0 37992713
    751291 7y7g:t (2.34) BS01 rna ? GO:0000027 ... P60624 37992713
    751292 7y7g:u (2.34) BS01 rna ? GO:0000027 ... P68919 37992713
    751293 7y7g:v (2.34) BS01 rna ? GO:0000027 ... P0A7L8 37992713
    751294 7y7g:v (2.34) BS02 rna ? GO:0000027 ... P0A7L8 37992713
    751295 7y7g:v (2.34) BS03 rna ? GO:0000027 ... P0A7L8 37992713
    751296 7y7g:w (2.34) BS01 rna ? GO:0000027 ... P0A7M2 37992713
    751297 7y7g:x (2.34) BS01 rna ? GO:0000027 ... P0A7M6 37992713
    751298 7y7g:y (2.34) BS01 rna ? GO:0000027 ... P0AG51 37992713
    751299 7y7g:z (2.34) BS01 rna ? GO:0000027 ... P0A7N4 37992713
    751300 7y7h:0 (2.51) BS01 rna ? GO:0000027 ... P0A7N9 37992713
    751301 7y7h:1 (2.51) BS01 rna ? GO:0002181 ... P0A7P5 37992713
    751302 7y7h:2 (2.51) BS01 rna ? GO:0002181 ... P0A7Q1 37992713
    751303 7y7h:3 (2.51) BS01 rna ? GO:0002181 ... P0A7Q6 37992713
    751304 7y7h:4 (2.51) BS01 rna ? GO:0002181 ... P0A7M9 37992713
    751305 7y7h:B (2.51) BS01 rna ? GO:0000028 ... P0A7V0 37992713
    751306 7y7h:C (2.51) BS01 rna ? GO:0000028 ... P0A7V3 37992713
    751307 7y7h:D (2.51) BS01 rna ? GO:0000028 ... P0A7V8 37992713
    751308 7y7h:E (2.51) BS01 rna ? GO:0000028 ... P0A7W1 37992713
    751309 7y7h:F (2.51) BS01 rna ? GO:0002181 ... P02358 37992713
    751310 7y7h:G (2.51) BS01 rna ? GO:0000028 ... P02359 37992713
    751311 7y7h:H (2.51) BS01 rna ? GO:0000028 ... P0A7W7 37992713
    751312 7y7h:I (2.51) BS01 rna ? GO:0000049 ... P0A7X3 37992713
    751313 7y7h:I (2.51) BS02 rna ? GO:0000049 ... P0A7X3 37992713
    751314 7y7h:J (2.51) BS01 rna ? GO:0000049 ... P0A7R5 37992713
    751315 7y7h:K (2.51) BS01 rna ? GO:0002181 ... P0A7R9 37992713
    751316 7y7h:L (2.51) BS01 rna ? GO:0000049 ... P0A7S3 37992713
    751317 7y7h:M (2.51) BS01 rna ? GO:0000049 ... P0A7S9 37992713
    751318 7y7h:M (2.51) BS02 rna ? GO:0000049 ... P0A7S9 37992713
    751319 7y7h:N (2.51) BS01 rna ? GO:0000028 ... P0AG59 37992713
    751320 7y7h:O (2.51) BS01 rna ? GO:0000028 ... P0ADZ4 37992713
    751321 7y7h:O (2.51) BS02 rna ? GO:0000028 ... P0ADZ4 37992713
    751322 7y7h:P (2.51) BS01 rna ? GO:0000028 ... P0A7T3 37992713
    751323 7y7h:Q (2.51) BS01 rna ? GO:0000028 ... P0AG63 37992713
    751324 7y7h:R (2.51) BS01 rna ? GO:0002181 ... P0A7T7 37992713
    751325 7y7h:S (2.51) BS01 rna ? GO:0000028 ... P0A7U3 37992713
    751326 7y7h:T (2.51) BS01 rna ? GO:0000028 ... P0A7U7 37992713
    751327 7y7h:U (2.51) BS01 rna ? GO:0000028 ... P68679 37992713
    751328 7y7h:c (2.51) BS01 rna ? GO:0000027 ... P60422 37992713
    751329 7y7h:d (2.51) BS01 rna ? GO:0000027 ... P60438 37992713
    751330 7y7h:e (2.51) BS01 rna ? GO:0001070 ... P60723 37992713
    751331 7y7h:f (2.51) BS01 rna ? GO:0000027 ... P62399 37992713
    751332 7y7h:f (2.51) BS02 rna ? GO:0000027 ... P62399 37992713
    751333 7y7h:f (2.51) BS03 rna ? GO:0000027 ... P62399 37992713
    751334 7y7h:g (2.51) BS01 rna ? GO:0000027 ... P0AG55 37992713
    751335 7y7h:h (2.51) BS01 rna ? GO:0002181 ... P0A7R1 37992713
    751336 7y7h:i (2.51) BS01 rna ? GO:0002181 ... P0AA10 37992713
    751337 7y7h:j (2.51) BS01 rna ? GO:0002181 ... P0ADY3 37992713
    751338 7y7h:j (2.51) BS02 rna ? GO:0002181 ... P0ADY3 37992713
    751339 7y7h:k (2.51) BS01 rna ? GO:0002181 ... P02413 37992713
    751340 7y7h:l (2.51) BS01 rna ? GO:0000027 ... P0ADY7 37992713
    751341 7y7h:l (2.51) BS02 rna ? GO:0000027 ... P0ADY7 37992713
    751342 7y7h:l (2.51) BS03 rna ? GO:0000027 ... P0ADY7 37992713
    751343 7y7h:m (2.51) BS01 rna ? GO:0000027 ... P0AG44 37992713
    751344 7y7h:n (2.51) BS01 rna ? GO:0002181 ... P0C018 37992713
    751345 7y7h:n (2.51) BS02 rna ? GO:0002181 ... P0C018 37992713
    751346 7y7h:o (2.51) BS01 rna ? GO:0000027 ... P0A7K6 37992713
    751347 7y7h:o (2.51) BS02 rna ? GO:0000027 ... P0A7K6 37992713
    751348 7y7h:p (2.51) BS01 rna ? GO:0000027 ... P0A7L3 37992713
    751349 7y7h:q (2.51) BS01 rna ? GO:0002181 ... P0AG48 37992713
    751350 7y7h:r (2.51) BS01 rna ? GO:0002181 ... P61175 37992713
    751351 7y7h:s (2.51) BS01 rna ? GO:0000027 ... P0ADZ0 37992713
    751352 7y7h:t (2.51) BS01 rna ? GO:0000027 ... P60624 37992713
    751353 7y7h:u (2.51) BS01 rna ? GO:0000027 ... P68919 37992713
    751354 7y7h:v (2.51) BS01 rna ? GO:0000027 ... P0A7L8 37992713
    751355 7y7h:v (2.51) BS02 rna ? GO:0000027 ... P0A7L8 37992713
    751356 7y7h:v (2.51) BS03 rna ? GO:0000027 ... P0A7L8 37992713
    751357 7y7h:w (2.51) BS01 rna ? GO:0000027 ... P0A7M2 37992713
    751358 7y7h:x (2.51) BS01 rna ? GO:0000027 ... P0A7M6 37992713
    751359 7y7h:y (2.51) BS01 rna ? GO:0000027 ... P0AG51 37992713
    751360 7y7h:z (2.51) BS01 rna ? GO:0000027 ... P0A7N4 37992713
    751361 7y7i:A (3.42) BS01 dna ? GO:0000786 ... P68431
    Q6XXM1
    N/A
    751362 7y7i:A (3.42) BS02 dna ? GO:0000786 ... P68431
    Q6XXM1
    N/A
    751363 7y7i:B (3.42) BS01 dna ? GO:0000781 ... P62805 N/A
    751364 7y7i:C (3.42) BS01 dna ? GO:0000786 ... P04908 N/A
    751365 7y7i:C (3.42) BS02 dna ? GO:0000786 ... P04908 N/A
    751366 7y7i:D (3.42) BS01 dna ? GO:0000786 ... P06899 N/A
    751367 7y7i:D (3.42) BS02 dna ? GO:0000786 ... P06899 N/A
    751368 7y7i:E (3.42) BS01 dna ? GO:0000786 ... P68431
    Q6XXM1
    N/A
    751369 7y7i:E (3.42) BS02 dna ? GO:0000786 ... P68431
    Q6XXM1
    N/A
    751370 7y7i:F (3.42) BS01 dna ? GO:0000781 ... P62805 N/A
    751371 7y7i:F (3.42) BS02 dna ? GO:0000781 ... P62805 N/A
    751372 7y7i:G (3.42) BS01 dna ? GO:0000786 ... P04908 N/A
    751373 7y7i:G (3.42) BS02 dna ? GO:0000786 ... P04908 N/A
    751374 7y7i:H (3.42) BS01 dna ? GO:0000786 ... P06899 N/A
    751375 7y7i:H (3.42) BS02 dna ? GO:0000786 ... P06899 N/A
    751376 7y7l:A (-1.00) BS01 ZN ? GO:0008270 ... Q8TCF1 38537699
    751377 7y7l:A (-1.00) BS02 ZN ? GO:0008270 ... Q8TCF1 38537699
    751378 7y7o:A (1.9) BS01 ZN 3.1.-.- GO:0004222 ... P67136 36457189
    751379 7y7p:A (2.7) BS01 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751380 7y7p:A (2.7) BS02 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751381 7y7p:A (2.7) BS03 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751382 7y7p:A (2.7) BS04 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751383 7y7p:A (2.7) BS05 ZAN 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751384 7y7p:B (2.7) BS01 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751385 7y7p:B (2.7) BS02 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751386 7y7p:B (2.7) BS03 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751387 7y7p:B (2.7) BS04 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751388 7y7p:B (2.7) BS05 ZAN 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751389 7y7q:A (2.05) BS01 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751390 7y7q:A (2.05) BS02 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751391 7y7q:A (2.05) BS03 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751392 7y7q:A (2.05) BS04 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751393 7y7q:A (2.05) BS05 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751394 7y7q:A (2.05) BS06 GTP 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751395 7y7q:B (2.05) BS01 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751396 7y7q:B (2.05) BS02 GTP 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751397 7y7q:B (2.05) BS03 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751398 7y7q:B (2.05) BS04 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751399 7y7q:B (2.05) BS05 GTP 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    751400 7y7r:A (2.1) BS01 dna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).