SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    754001 7ymi:8 (3.3) BS13 CL7 ? GO:0009521 ... B0C3E6 38394197
    754002 7ymi:8 (3.3) BS14 CL7 ? GO:0009521 ... B0C3E6 38394197
    754003 7ymi:8 (3.3) BS15 CL7 ? GO:0009521 ... B0C3E6 38394197
    754004 7ymi:8 (3.3) BS16 CL7 ? GO:0009521 ... B0C3E6 38394197
    754005 7ymi:8 (3.3) BS17 ZEX ? GO:0009521 ... B0C3E6 38394197
    754006 7ymi:8 (3.3) BS18 ZEX ? GO:0009521 ... B0C3E6 38394197
    754007 7ymi:8 (3.3) BS19 ZEX ? GO:0009521 ... B0C3E6 38394197
    754008 7ymi:A (3.3) BS01 peptide 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    754009 7ymi:A (3.3) BS02 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    754010 7ymi:A (3.3) BS03 PHO 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    754011 7ymi:A (3.3) BS04 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    754012 7ymi:A (3.3) BS05 8CT 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    754013 7ymi:A (3.3) BS06 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    754014 7ymi:A (3.3) BS07 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    754015 7ymi:A (3.3) BS08 FE2 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    754016 7ymi:A (3.3) BS09 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    754017 7ymi:A (3.3) BS10 PHO 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    754018 7ymi:B (3.3) BS01 CL7 ? GO:0009521 ... B0CFM2 38394197
    754019 7ymi:B (3.3) BS02 CL7 ? GO:0009521 ... B0CFM2 38394197
    754020 7ymi:B (3.3) BS03 CL7 ? GO:0009521 ... B0CFM2 38394197
    754021 7ymi:B (3.3) BS04 CL7 ? GO:0009521 ... B0CFM2 38394197
    754022 7ymi:B (3.3) BS05 CL7 ? GO:0009521 ... B0CFM2 38394197
    754023 7ymi:B (3.3) BS06 CL7 ? GO:0009521 ... B0CFM2 38394197
    754024 7ymi:B (3.3) BS07 CL7 ? GO:0009521 ... B0CFM2 38394197
    754025 7ymi:B (3.3) BS08 CL7 ? GO:0009521 ... B0CFM2 38394197
    754026 7ymi:B (3.3) BS09 CL7 ? GO:0009521 ... B0CFM2 38394197
    754027 7ymi:B (3.3) BS10 CL7 ? GO:0009521 ... B0CFM2 38394197
    754028 7ymi:B (3.3) BS11 CL7 ? GO:0009521 ... B0CFM2 38394197
    754029 7ymi:B (3.3) BS12 CL7 ? GO:0009521 ... B0CFM2 38394197
    754030 7ymi:B (3.3) BS13 CL7 ? GO:0009521 ... B0CFM2 38394197
    754031 7ymi:B (3.3) BS14 CL7 ? GO:0009521 ... B0CFM2 38394197
    754032 7ymi:B (3.3) BS15 CL7 ? GO:0009521 ... B0CFM2 38394197
    754033 7ymi:B (3.3) BS16 CL7 ? GO:0009521 ... B0CFM2 38394197
    754034 7ymi:B (3.3) BS17 8CT ? GO:0009521 ... B0CFM2 38394197
    754035 7ymi:B (3.3) BS18 8CT ? GO:0009521 ... B0CFM2 38394197
    754036 7ymi:B (3.3) BS19 CL7 ? GO:0009521 ... B0CFM2 38394197
    754037 7ymi:B (3.3) BS20 8CT ? GO:0009521 ... B0CFM2 38394197
    754038 7ymi:C (3.3) BS01 peptide ? GO:0005737 ... B0C1V7 38394197
    754039 7ymi:C (3.3) BS02 CL7 ? GO:0005737 ... B0C1V7 38394197
    754040 7ymi:C (3.3) BS03 CL7 ? GO:0005737 ... B0C1V7 38394197
    754041 7ymi:C (3.3) BS04 CL7 ? GO:0005737 ... B0C1V7 38394197
    754042 7ymi:C (3.3) BS05 CL7 ? GO:0005737 ... B0C1V7 38394197
    754043 7ymi:C (3.3) BS06 CL7 ? GO:0005737 ... B0C1V7 38394197
    754044 7ymi:C (3.3) BS07 CL7 ? GO:0005737 ... B0C1V7 38394197
    754045 7ymi:C (3.3) BS08 CL7 ? GO:0005737 ... B0C1V7 38394197
    754046 7ymi:C (3.3) BS09 CL7 ? GO:0005737 ... B0C1V7 38394197
    754047 7ymi:C (3.3) BS10 CL7 ? GO:0005737 ... B0C1V7 38394197
    754048 7ymi:C (3.3) BS11 CL7 ? GO:0005737 ... B0C1V7 38394197
    754049 7ymi:C (3.3) BS12 CL7 ? GO:0005737 ... B0C1V7 38394197
    754050 7ymi:C (3.3) BS13 CL7 ? GO:0005737 ... B0C1V7 38394197
    754051 7ymi:C (3.3) BS14 CL7 ? GO:0005737 ... B0C1V7 38394197
    754052 7ymi:C (3.3) BS15 8CT ? GO:0005737 ... B0C1V7 38394197
    754053 7ymi:C (3.3) BS16 8CT ? GO:0005737 ... B0C1V7 38394197
    754054 7ymi:C (3.3) BS17 CL7 ? GO:0005737 ... B0C1V7 38394197
    754055 7ymi:C (3.3) BS18 8CT ? GO:0005737 ... B0C1V7 38394197
    754056 7ymi:D (3.3) BS01 PHO 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    754057 7ymi:D (3.3) BS02 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    754058 7ymi:D (3.3) BS03 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    754059 7ymi:D (3.3) BS04 FE2 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    754060 7ymi:D (3.3) BS05 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    754061 7ymi:D (3.3) BS06 BCT 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    754062 7ymi:D (3.3) BS07 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    754063 7ymi:D (3.3) BS08 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    754064 7ymi:D (3.3) BS09 8CT 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    754065 7ymi:D (3.3) BS10 PHO 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    754066 7ymi:E (3.3) BS01 HEM ? GO:0005506 ... B0C6T2 38394197
    754067 7ymi:F (3.3) BS01 8CT ? GO:0005737 ... B0C2V2 38394197
    754068 7ymi:F (3.3) BS02 HEM ? GO:0005737 ... B0C2V2 38394197
    754069 7ymi:H (3.3) BS01 CL7 ? GO:0009523 ... B0CDZ2 38394197
    754070 7ymi:H (3.3) BS02 CL7 ? GO:0009523 ... B0CDZ2 38394197
    754071 7ymi:H (3.3) BS03 CL7 ? GO:0009523 ... B0CDZ2 38394197
    754072 7ymi:H (3.3) BS04 CL7 ? GO:0009523 ... B0CDZ2 38394197
    754073 7ymi:I (3.3) BS01 CL7 ? GO:0009523 ... B0C5R5 38394197
    754074 7ymi:I (3.3) BS02 CL7 ? GO:0009523 ... B0C5R5 38394197
    754075 7ymi:K (3.3) BS01 CL7 ? GO:0005737 ... B0C6Z7 38394197
    754076 7ymi:K (3.3) BS02 CL7 ? GO:0005737 ... B0C6Z7 38394197
    754077 7ymi:K (3.3) BS03 8CT ? GO:0005737 ... B0C6Z7 38394197
    754078 7ymi:L (3.3) BS01 peptide ? GO:0005737 ... B0C6T1 38394197
    754079 7ymi:M (3.3) BS01 peptide ? GO:0009523 ... B0CFM0 38394197
    754080 7ymi:Z (3.3) BS01 peptide ? GO:0009523 ... B0C0S7 38394197
    754081 7ymi:a (3.3) BS01 peptide 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    754082 7ymi:a (3.3) BS02 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    754083 7ymi:a (3.3) BS03 PHO 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    754084 7ymi:a (3.3) BS04 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    754085 7ymi:a (3.3) BS05 8CT 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    754086 7ymi:a (3.3) BS06 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    754087 7ymi:a (3.3) BS07 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    754088 7ymi:a (3.3) BS08 FE2 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    754089 7ymi:a (3.3) BS09 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    754090 7ymi:a (3.3) BS10 PHO 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    754091 7ymi:b (3.3) BS01 8CT ? GO:0009521 ... B0CFM2 38394197
    754092 7ymi:b (3.3) BS02 CL7 ? GO:0009521 ... B0CFM2 38394197
    754093 7ymi:b (3.3) BS03 CL7 ? GO:0009521 ... B0CFM2 38394197
    754094 7ymi:b (3.3) BS04 CL7 ? GO:0009521 ... B0CFM2 38394197
    754095 7ymi:b (3.3) BS05 CL7 ? GO:0009521 ... B0CFM2 38394197
    754096 7ymi:b (3.3) BS06 CL7 ? GO:0009521 ... B0CFM2 38394197
    754097 7ymi:b (3.3) BS07 CL7 ? GO:0009521 ... B0CFM2 38394197
    754098 7ymi:b (3.3) BS08 CL7 ? GO:0009521 ... B0CFM2 38394197
    754099 7ymi:b (3.3) BS09 CL7 ? GO:0009521 ... B0CFM2 38394197
    754100 7ymi:b (3.3) BS10 CL7 ? GO:0009521 ... B0CFM2 38394197
    754101 7ymi:b (3.3) BS11 CL7 ? GO:0009521 ... B0CFM2 38394197
    754102 7ymi:b (3.3) BS12 CL7 ? GO:0009521 ... B0CFM2 38394197
    754103 7ymi:b (3.3) BS13 CL7 ? GO:0009521 ... B0CFM2 38394197
    754104 7ymi:b (3.3) BS14 CL7 ? GO:0009521 ... B0CFM2 38394197
    754105 7ymi:b (3.3) BS15 CL7 ? GO:0009521 ... B0CFM2 38394197
    754106 7ymi:b (3.3) BS16 CL7 ? GO:0009521 ... B0CFM2 38394197
    754107 7ymi:b (3.3) BS17 CL7 ? GO:0009521 ... B0CFM2 38394197
    754108 7ymi:b (3.3) BS18 8CT ? GO:0009521 ... B0CFM2 38394197
    754109 7ymi:b (3.3) BS19 8CT ? GO:0009521 ... B0CFM2 38394197
    754110 7ymi:b (3.3) BS20 CL7 ? GO:0009521 ... B0CFM2 38394197
    754111 7ymi:c (3.3) BS01 peptide ? GO:0005737 ... B0C1V7 38394197
    754112 7ymi:c (3.3) BS02 CL7 ? GO:0005737 ... B0C1V7 38394197
    754113 7ymi:c (3.3) BS03 CL7 ? GO:0005737 ... B0C1V7 38394197
    754114 7ymi:c (3.3) BS04 CL7 ? GO:0005737 ... B0C1V7 38394197
    754115 7ymi:c (3.3) BS05 CL7 ? GO:0005737 ... B0C1V7 38394197
    754116 7ymi:c (3.3) BS06 CL7 ? GO:0005737 ... B0C1V7 38394197
    754117 7ymi:c (3.3) BS07 CL7 ? GO:0005737 ... B0C1V7 38394197
    754118 7ymi:c (3.3) BS08 CL7 ? GO:0005737 ... B0C1V7 38394197
    754119 7ymi:c (3.3) BS09 CL7 ? GO:0005737 ... B0C1V7 38394197
    754120 7ymi:c (3.3) BS10 CL7 ? GO:0005737 ... B0C1V7 38394197
    754121 7ymi:c (3.3) BS11 CL7 ? GO:0005737 ... B0C1V7 38394197
    754122 7ymi:c (3.3) BS12 CL7 ? GO:0005737 ... B0C1V7 38394197
    754123 7ymi:c (3.3) BS13 CL7 ? GO:0005737 ... B0C1V7 38394197
    754124 7ymi:c (3.3) BS14 CL7 ? GO:0005737 ... B0C1V7 38394197
    754125 7ymi:c (3.3) BS15 8CT ? GO:0005737 ... B0C1V7 38394197
    754126 7ymi:c (3.3) BS16 8CT ? GO:0005737 ... B0C1V7 38394197
    754127 7ymi:c (3.3) BS17 CL7 ? GO:0005737 ... B0C1V7 38394197
    754128 7ymi:c (3.3) BS18 8CT ? GO:0005737 ... B0C1V7 38394197
    754129 7ymi:d (3.3) BS01 PHO 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    754130 7ymi:d (3.3) BS02 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    754131 7ymi:d (3.3) BS03 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    754132 7ymi:d (3.3) BS04 FE2 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    754133 7ymi:d (3.3) BS05 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    754134 7ymi:d (3.3) BS06 BCT 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    754135 7ymi:d (3.3) BS07 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    754136 7ymi:d (3.3) BS08 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    754137 7ymi:d (3.3) BS09 8CT 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    754138 7ymi:d (3.3) BS10 PHO 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    754139 7ymi:e (3.3) BS01 HEM ? GO:0005506 ... B0C6T2 38394197
    754140 7ymi:f (3.3) BS01 8CT ? GO:0005737 ... B0C2V2 38394197
    754141 7ymi:f (3.3) BS02 HEM ? GO:0005737 ... B0C2V2 38394197
    754142 7ymi:h (3.3) BS01 CL7 ? GO:0009523 ... B0CDZ2 38394197
    754143 7ymi:h (3.3) BS02 CL7 ? GO:0009523 ... B0CDZ2 38394197
    754144 7ymi:h (3.3) BS03 CL7 ? GO:0009523 ... B0CDZ2 38394197
    754145 7ymi:h (3.3) BS04 CL7 ? GO:0009523 ... B0CDZ2 38394197
    754146 7ymi:i (3.3) BS01 CL7 ? GO:0009523 ... B0C5R5 38394197
    754147 7ymi:i (3.3) BS02 CL7 ? GO:0009523 ... B0C5R5 38394197
    754148 7ymi:k (3.3) BS01 CL7 ? GO:0005737 ... B0C6Z7 38394197
    754149 7ymi:k (3.3) BS02 CL7 ? GO:0005737 ... B0C6Z7 38394197
    754150 7ymi:k (3.3) BS03 8CT ? GO:0005737 ... B0C6Z7 38394197
    754151 7ymi:l (3.3) BS01 peptide ? GO:0005737 ... B0C6T1 38394197
    754152 7ymi:m (3.3) BS01 peptide ? GO:0009523 ... B0CFM0 38394197
    754153 7ymi:z (3.3) BS01 peptide ? GO:0009523 ... B0C0S7 38394197
    754154 7ymj:A (3.35) BS01 JGX ? GO:0004930 ... P35348
    P41145
    37339967
    754155 7ymk:A (2.25) BS01 peptide ? N/A P03372 38045063
    754156 7ymk:B (2.25) BS01 peptide ? N/A P03372 38045063
    754157 7ymk:B (2.25) BS02 IX0 ? N/A P03372 38045063
    754158 7yml:A (2.6) BS01 U10 ? GO:0005886 ... P02948 36792596
    754159 7yml:A (2.6) BS02 BCL ? GO:0005886 ... P02948 36792596
    754160 7yml:A (2.6) BS03 BCL ? GO:0005886 ... P02948 36792596
    754161 7yml:A (2.6) BS04 SPO ? GO:0005886 ... P02948 36792596
    754162 7yml:A (2.6) BS05 BCL ? GO:0005886 ... P02948 36792596
    754163 7yml:A (2.6) BS06 SPO ? GO:0005886 ... P02948 36792596
    754164 7yml:B (2.6) BS01 BCL ? GO:0005886 ... P02950 36792596
    754165 7yml:B (2.6) BS02 BCL ? GO:0005886 ... P02950 36792596
    754166 7yml:B (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    754167 7yml:B (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    754168 7yml:D (2.6) BS01 U10 ? GO:0005886 ... P02948 36792596
    754169 7yml:D (2.6) BS02 SPO ? GO:0005886 ... P02948 36792596
    754170 7yml:D (2.6) BS03 BCL ? GO:0005886 ... P02948 36792596
    754171 7yml:D (2.6) BS04 SPO ? GO:0005886 ... P02948 36792596
    754172 7yml:D (2.6) BS05 SPO ? GO:0005886 ... P02948 36792596
    754173 7yml:D (2.6) BS06 BCL ? GO:0005886 ... P02948 36792596
    754174 7yml:D (2.6) BS07 BCL ? GO:0005886 ... P02948 36792596
    754175 7yml:E (2.6) BS01 BCL ? GO:0005886 ... P02950 36792596
    754176 7yml:E (2.6) BS02 SPO ? GO:0005886 ... P02950 36792596
    754177 7yml:E (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    754178 7yml:E (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    754179 7yml:E (2.6) BS05 BCL ? GO:0005886 ... P02950 36792596
    754180 7yml:F (2.6) BS01 SPO ? GO:0005886 ... P02948 36792596
    754181 7yml:F (2.6) BS02 SPO ? GO:0005886 ... P02948 36792596
    754182 7yml:F (2.6) BS03 BCL ? GO:0005886 ... P02948 36792596
    754183 7yml:F (2.6) BS04 BCL ? GO:0005886 ... P02948 36792596
    754184 7yml:F (2.6) BS05 BCL ? GO:0005886 ... P02948 36792596
    754185 7yml:F (2.6) BS06 BCL ? GO:0005886 ... P02948 36792596
    754186 7yml:F (2.6) BS07 SPO ? GO:0005886 ... P02948 36792596
    754187 7yml:G (2.6) BS01 SPO ? GO:0005886 ... P02950 36792596
    754188 7yml:G (2.6) BS02 BCL ? GO:0005886 ... P02950 36792596
    754189 7yml:G (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    754190 7yml:G (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    754191 7yml:I (2.6) BS01 SPO ? GO:0005886 ... P02948 36792596
    754192 7yml:I (2.6) BS02 BCL ? GO:0005886 ... P02948 36792596
    754193 7yml:I (2.6) BS03 BCL ? GO:0005886 ... P02948 36792596
    754194 7yml:I (2.6) BS04 SPO ? GO:0005886 ... P02948 36792596
    754195 7yml:I (2.6) BS05 SPO ? GO:0005886 ... P02948 36792596
    754196 7yml:I (2.6) BS06 BCL ? GO:0005886 ... P02948 36792596
    754197 7yml:J (2.6) BS01 SPO ? GO:0005886 ... P02950 36792596
    754198 7yml:J (2.6) BS02 BCL ? GO:0005886 ... P02950 36792596
    754199 7yml:J (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    754200 7yml:J (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).