SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    755001 7yni:A (3.26) BS02 KQC ? GO:0000017 ... P13866 37217492
    755002 7ynj:A (3.33) BS01 peptide ? GO:0000017 ... P31639 37217492
    755003 7ynj:A (3.33) BS02 GYP ? GO:0000017 ... P31639 37217492
    755004 7ynk:A (3.48) BS01 peptide ? GO:0000017 ... P31639 37217492
    755005 7ynm:A (2.9) BS01 TFX ? GO:0000122 ... P37840 N/A
    755006 7ynm:A (2.9) BS02 TFX ? GO:0000122 ... P37840 N/A
    755007 7ynm:B (2.9) BS01 TFX ? GO:0000122 ... P37840 N/A
    755008 7ynm:B (2.9) BS02 TFX ? GO:0000122 ... P37840 N/A
    755009 7ynm:C (2.9) BS01 TFX ? GO:0000122 ... P37840 N/A
    755010 7ynm:C (2.9) BS02 TFX ? GO:0000122 ... P37840 N/A
    755011 7ynm:D (2.9) BS01 TFX ? GO:0000122 ... P37840 N/A
    755012 7ynm:G (2.9) BS01 TFX ? GO:0000122 ... P37840 N/A
    755013 7ynm:G (2.9) BS02 TFX ? GO:0000122 ... P37840 N/A
    755014 7ynm:H (2.9) BS01 TFX ? GO:0000122 ... P37840 N/A
    755015 7ynm:H (2.9) BS02 TFX ? GO:0000122 ... P37840 N/A
    755016 7ynm:I (2.9) BS01 TFX ? GO:0000122 ... P37840 N/A
    755017 7ynm:J (2.9) BS01 TFX ? GO:0000122 ... P37840 N/A
    755018 7ynm:J (2.9) BS02 TFX ? GO:0000122 ... P37840 N/A
    755019 7ynp:D (2.8) BS01 IZM ? GO:0000122 ... P37840 N/A
    755020 7ynp:F (2.8) BS01 IZM ? GO:0000122 ... P37840 N/A
    755021 7ynw:A (2.79) BS01 J2F 6.1.1.1 GO:0000166 ... Q57834 36142308
    755022 7ynw:B (2.79) BS01 J2F 6.1.1.1 GO:0000166 ... Q57834 36142308
    755023 7ynx:A (2.3) BS01 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    755024 7ynx:A (2.3) BS02 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    755025 7ynx:A (2.3) BS03 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    755026 7ynx:A (2.3) BS04 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    755027 7ynx:A (2.3) BS05 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    755028 7ynx:A (2.3) BS06 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    755029 7ynx:A (2.3) BS07 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    755030 7ynx:A (2.3) BS08 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    755031 7ynx:B (2.3) BS01 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    755032 7ynx:B (2.3) BS02 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    755033 7ynx:B (2.3) BS03 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    755034 7ynx:B (2.3) BS04 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    755035 7ynx:B (2.3) BS05 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    755036 7ynx:B (2.3) BS06 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    755037 7ynx:B (2.3) BS07 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    755038 7ynx:B (2.3) BS08 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    755039 7ynz:A (3.5) BS01 MG ? GO:0005216 ... Q12791 N/A
    755040 7ynz:A (3.5) BS02 CA ? GO:0005216 ... Q12791 N/A
    755041 7ynz:A (3.5) BS03 CA ? GO:0005216 ... Q12791 N/A
    755042 7ynz:C (3.5) BS01 CA ? GO:0005216 ... Q12791 N/A
    755043 7ynz:C (3.5) BS02 MG ? GO:0005216 ... Q12791 N/A
    755044 7ynz:C (3.5) BS03 CA ? GO:0005216 ... Q12791 N/A
    755045 7ynz:E (3.5) BS01 CA ? GO:0005216 ... Q12791 N/A
    755046 7ynz:E (3.5) BS02 CA ? GO:0005216 ... Q12791 N/A
    755047 7ynz:G (3.5) BS01 CA ? GO:0005216 ... Q12791 N/A
    755048 7ynz:G (3.5) BS02 MG ? GO:0005216 ... Q12791 N/A
    755049 7ynz:G (3.5) BS03 CA ? GO:0005216 ... Q12791 N/A
    755050 7yo0:A (3.6) BS01 PGW ? GO:0005216 ... Q12791 N/A
    755051 7yo0:A (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    755052 7yo0:A (3.6) BS03 CA ? GO:0005216 ... Q12791 N/A
    755053 7yo0:C (3.6) BS01 PGW ? GO:0005216 ... Q12791 N/A
    755054 7yo0:C (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    755055 7yo0:C (3.6) BS03 CA ? GO:0005216 ... Q12791 N/A
    755056 7yo0:E (3.6) BS01 PGW ? GO:0005216 ... Q12791 N/A
    755057 7yo0:E (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    755058 7yo0:E (3.6) BS03 CA ? GO:0005216 ... Q12791 N/A
    755059 7yo0:G (3.6) BS01 PGW ? GO:0005216 ... Q12791 N/A
    755060 7yo0:G (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    755061 7yo0:G (3.6) BS03 CA ? GO:0005216 ... Q12791 N/A
    755062 7yo1:A (3.6) BS01 MG ? GO:0005216 ... Q12791 N/A
    755063 7yo1:A (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    755064 7yo1:A (3.6) BS03 CA ? GO:0005216 ... Q12791 N/A
    755065 7yo1:C (3.6) BS01 CA ? GO:0005216 ... Q12791 N/A
    755066 7yo1:C (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    755067 7yo1:E (3.6) BS01 CA ? GO:0005216 ... Q12791 N/A
    755068 7yo1:E (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    755069 7yo1:G (3.6) BS01 CA ? GO:0005216 ... Q12791 N/A
    755070 7yo1:G (3.6) BS02 MG ? GO:0005216 ... Q12791 N/A
    755071 7yo1:G (3.6) BS03 CA ? GO:0005216 ... Q12791 N/A
    755072 7yo3:A (3.1) BS01 MG ? GO:0005216 ... Q12791 N/A
    755073 7yo3:A (3.1) BS02 CA ? GO:0005216 ... Q12791 N/A
    755074 7yo3:A (3.1) BS03 CA ? GO:0005216 ... Q12791 N/A
    755075 7yo5:A (3.9) BS01 CA ? GO:0005216 ... Q12791 N/A
    755076 7yo5:A (3.9) BS02 CA ? GO:0005216 ... Q12791 N/A
    755077 7yo5:B (3.9) BS01 CA ? GO:0005216 ... Q12791 N/A
    755078 7yo5:B (3.9) BS02 CA ? GO:0005216 ... Q12791 N/A
    755079 7yo5:C (3.9) BS01 CA ? GO:0005216 ... Q12791 N/A
    755080 7yo5:C (3.9) BS02 CA ? GO:0005216 ... Q12791 N/A
    755081 7yo5:D (3.9) BS01 CA ? GO:0005216 ... Q12791 N/A
    755082 7yo5:D (3.9) BS02 CA ? GO:0005216 ... Q12791 N/A
    755083 7yo6:A (2.54) BS01 BKR 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    755084 7yo6:A (2.54) BS02 XYZ 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    755085 7yo6:B (2.54) BS01 BKR 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    755086 7yo6:B (2.54) BS02 XYL 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    755087 7yo7:A (1.81) BS01 BKR 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    755088 7yo7:A (1.81) BS02 XLS 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    755089 7yo7:B (1.81) BS01 MAN 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    755090 7yo7:B (1.81) BS02 BKR 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    755091 7yo7:B (1.81) BS03 XLS 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    755092 7yod:A (2.101) BS01 peptide 2.5.1.47 GO:0004124 ... P45040 N/A
    755093 7yoh:A (2.5) BS01 peptide 2.5.1.47 GO:0004124 ... P45040 N/A
    755094 7yoi:A (2.14) BS01 peptide 2.5.1.47 GO:0004124 ... P45040 N/A
    755095 7yoj:A (3.36) BS01 dna ? N/A A0A399WQY8 36650285
    755096 7yoj:A (3.36) BS02 dna ? N/A A0A399WQY8 36650285
    755097 7yoj:A (3.36) BS03 rna ? N/A A0A399WQY8 36650285
    755098 7yol:A (2.4) BS01 peptide 2.5.1.47 GO:0004124 ... P45040 N/A
    755099 7yom:A (2.8) BS01 peptide 2.5.1.47 GO:0004124 ... P45040 N/A
    755100 7yon:R (2.95) BS01 peptide ? GO:0001601 ... P49146 36525977
    755101 7yoo:R (3.11) BS01 peptide ? GO:0001601 ... P49146 36525977
    755102 7yop:A (2.20003) BS01 GDP ? GO:0003924 ... N/A 38718863
    755103 7yop:A (2.20003) BS02 GNP ? GO:0003924 ... N/A 38718863
    755104 7yop:B (2.20003) BS01 GDP ? GO:0003924 ... N/A 38718863
    755105 7yop:B (2.20003) BS02 GNP ? GO:0003924 ... N/A 38718863
    755106 7yoq:A (2.265) BS01 IY0 ? GO:0003676 ... Q58241 N/A
    755107 7yoq:B (2.265) BS01 IY0 ? GO:0003676 ... Q58241 N/A
    755108 7yor:A (2.53) BS01 IY9 ? GO:0003676 ... Q58241 N/A
    755109 7yor:B (2.53) BS01 IY9 ? GO:0003676 ... Q58241 N/A
    755110 7yos:A (2.17) BS01 MN ? GO:0003676 ... Q58241 N/A
    755111 7yos:B (2.17) BS01 MN ? GO:0003676 ... Q58241 N/A
    755112 7yoz:A (4.3) BS01 dna ? GO:0000786 ... P68431 36322721
    755113 7yoz:B (4.3) BS01 dna ? GO:0000781 ... P62805 36322721
    755114 7yoz:C (4.3) BS01 dna ? GO:0000786 ... P68431 36322721
    755115 7yoz:C (4.3) BS02 dna ? GO:0000786 ... P68431 36322721
    755116 7yoz:D (4.3) BS01 dna ? GO:0000781 ... P62805 36322721
    755117 7yoz:D (4.3) BS02 dna ? GO:0000781 ... P62805 36322721
    755118 7yoz:E (4.3) BS01 dna ? GO:0000786 ... P68431 36322721
    755119 7yoz:E (4.3) BS02 dna ? GO:0000786 ... P68431 36322721
    755120 7yoz:F (4.3) BS01 dna ? GO:0000781 ... P62805 36322721
    755121 7yoz:G (4.3) BS01 dna ? GO:0000786 ... P68431 36322721
    755122 7yoz:H (4.3) BS01 dna ? GO:0000781 ... P62805 36322721
    755123 7yp3:B (2.1) BS01 ELO ? GO:0000166 ... E5L4T5 36189743
    755124 7yp3:B (2.1) BS02 ELO ? GO:0000166 ... E5L4T5 36189743
    755125 7yp3:C (2.1) BS01 ELO ? GO:0000166 ... E5L4T5 36189743
    755126 7yp3:C (2.1) BS02 ELO ? GO:0000166 ... E5L4T5 36189743
    755127 7yp3:D (2.1) BS01 ELO ? GO:0000166 ... E5L4T5 36189743
    755128 7yp3:D (2.1) BS02 ELO ? GO:0000166 ... E5L4T5 36189743
    755129 7yp3:E (2.1) BS01 ELO ? GO:0000166 ... E5L4T5 36189743
    755130 7yp3:E (2.1) BS02 ELO ? GO:0000166 ... E5L4T5 36189743
    755131 7yp3:F (2.1) BS01 ELO ? GO:0000166 ... E5L4T5 36189743
    755132 7yp5:A (2.33) BS01 TYD ? GO:0000166 ... E5L4T5 36189743
    755133 7yp5:B (2.33) BS01 TYD ? GO:0000166 ... E5L4T5 36189743
    755134 7yp6:A (2.6) BS01 UDP ? GO:0000166 ... E5L4T5 36189743
    755135 7yp6:B (2.6) BS01 UDP ? GO:0000166 ... E5L4T5 36189743
    755136 7yp8:A (2.1) BS01 JIE 6.1.1.4 GO:0000166 ... B4RNT1 N/A
    755137 7yp8:A (2.1) BS02 ZN 6.1.1.4 GO:0000166 ... B4RNT1 N/A
    755138 7yp9:C (3.58) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 36631609
    755139 7yp9:C (3.58) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 36631609
    755140 7yp9:C (3.58) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 36631609
    755141 7yp9:D (3.58) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 36631609
    755142 7yp9:D (3.58) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 36631609
    755143 7yp9:D (3.58) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 36631609
    755144 7yp9:D (3.58) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36631609
    755145 7ypa:C (3.05) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 36631609
    755146 7ypa:C (3.05) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 36631609
    755147 7ypa:C (3.05) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 36631609
    755148 7ypa:D (3.05) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 36631609
    755149 7ypa:D (3.05) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 36631609
    755150 7ypa:D (3.05) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 36631609
    755151 7ypa:D (3.05) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36631609
    755152 7ypa:D (3.05) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36631609
    755153 7ypa:D (3.05) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 36631609
    755154 7ypb:C (3.48) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 36631609
    755155 7ypb:C (3.48) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 36631609
    755156 7ypb:D (3.48) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 36631609
    755157 7ypb:D (3.48) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 36631609
    755158 7ypb:D (3.48) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 36631609
    755159 7yph:B (3.68) BS01 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755160 7yph:D (3.68) BS01 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755161 7ypi:A (3.8) BS01 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755162 7ypi:B (3.8) BS01 AGS 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755163 7ypj:A (3.8) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755164 7ypj:B (3.8) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755165 7ypj:C (3.8) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755166 7ypj:D (3.8) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755167 7ypk:A (3.4) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755168 7ypk:B (3.4) BS01 peptide 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755169 7ypk:B (3.4) BS02 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755170 7ypk:C (3.4) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755171 7ypk:D (3.4) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755172 7ypk:E (3.4) BS01 peptide 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755173 7ypk:E (3.4) BS02 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755174 7ypk:F (3.4) BS01 peptide 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755175 7ypk:F (3.4) BS02 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755176 7ypk:F (3.4) BS03 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755177 7ypm:A (1.984) BS01 PLP ? GO:0005829 ... A0A318BC23 36300723
    755178 7ypm:A (1.984) BS02 ALA ? GO:0005829 ... A0A318BC23 36300723
    755179 7ypm:B (1.984) BS01 PLP ? GO:0005829 ... A0A318BC23 36300723
    755180 7ypm:B (1.984) BS02 ALA ? GO:0005829 ... A0A318BC23 36300723
    755181 7ypm:B (1.984) BS03 ALA ? GO:0005829 ... A0A318BC23 36300723
    755182 7ypm:B (1.984) BS04 PLP ? GO:0005829 ... A0A318BC23 36300723
    755183 7ypm:B (1.984) BS05 ALA ? GO:0005829 ... A0A318BC23 36300723
    755184 7ypm:C (1.984) BS01 PLP ? GO:0005829 ... A0A318BC23 36300723
    755185 7ypm:D (1.984) BS01 PLP ? GO:0005829 ... A0A318BC23 36300723
    755186 7ypm:D (1.984) BS02 PLP ? GO:0005829 ... A0A318BC23 36300723
    755187 7ypm:D (1.984) BS03 ALA ? GO:0005829 ... A0A318BC23 36300723
    755188 7ypm:D (1.984) BS04 ALA ? GO:0005829 ... A0A318BC23 36300723
    755189 7ypn:B (2.049) BS01 PLP ? GO:0005829 ... A0A318BC23 36300723
    755190 7ypn:B (2.049) BS02 PLP ? GO:0005829 ... A0A318BC23 36300723
    755191 7ypn:D (2.049) BS01 PLP ? GO:0005829 ... A0A318BC23 36300723
    755192 7ypn:D (2.049) BS02 PLP ? GO:0005829 ... A0A318BC23 36300723
    755193 7ypo:A (3.5) BS01 dna ? GO:0003677 ... Q91BW6 36477586
    755194 7ypo:B (3.5) BS01 dna ? GO:0003677 ... Q91BW6 36477586
    755195 7ypo:C (3.5) BS01 dna ? GO:0003677 ... Q91BW6 36477586
    755196 7ypo:D (3.5) BS01 dna ? GO:0003677 ... Q91BW6 36477586
    755197 7ypp:A (2.2) BS01 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    755198 7ypp:A (2.2) BS02 ZN 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    755199 7ypp:B (2.2) BS01 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    755200 7ypp:B (2.2) BS02 ZN 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).