SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    755401 7y7h:D (2.51) BS01 rna ? GO:0000028 ... P0A7V8 37992713
    755402 7y7h:E (2.51) BS01 rna ? GO:0000028 ... P0A7W1 37992713
    755403 7y7h:F (2.51) BS01 rna ? GO:0002181 ... P02358 37992713
    755404 7y7h:G (2.51) BS01 rna ? GO:0000028 ... P02359 37992713
    755405 7y7h:H (2.51) BS01 rna ? GO:0000028 ... P0A7W7 37992713
    755406 7y7h:I (2.51) BS01 rna ? GO:0002181 ... P0A7X3 37992713
    755407 7y7h:I (2.51) BS02 rna ? GO:0002181 ... P0A7X3 37992713
    755408 7y7h:J (2.51) BS01 rna ? GO:0000049 ... P0A7R5 37992713
    755409 7y7h:K (2.51) BS01 rna ? GO:0002181 ... P0A7R9 37992713
    755410 7y7h:L (2.51) BS01 rna ? GO:0000049 ... P0A7S3 37992713
    755411 7y7h:M (2.51) BS01 rna ? GO:0000049 ... P0A7S9 37992713
    755412 7y7h:M (2.51) BS02 rna ? GO:0000049 ... P0A7S9 37992713
    755413 7y7h:N (2.51) BS01 rna ? GO:0000028 ... P0AG59 37992713
    755414 7y7h:O (2.51) BS01 rna ? GO:0000028 ... P0ADZ4 37992713
    755415 7y7h:O (2.51) BS02 rna ? GO:0000028 ... P0ADZ4 37992713
    755416 7y7h:P (2.51) BS01 rna ? GO:0000028 ... P0A7T3 37992713
    755417 7y7h:Q (2.51) BS01 rna ? GO:0000028 ... P0AG63 37992713
    755418 7y7h:R (2.51) BS01 rna ? GO:0002181 ... P0A7T7 37992713
    755419 7y7h:S (2.51) BS01 rna ? GO:0002181 ... P0A7U3 37992713
    755420 7y7h:T (2.51) BS01 rna ? GO:0000028 ... P0A7U7 37992713
    755421 7y7h:U (2.51) BS01 rna ? GO:0000028 ... P68679 37992713
    755422 7y7h:c (2.51) BS01 rna ? GO:0000027 ... P60422 37992713
    755423 7y7h:d (2.51) BS01 rna ? GO:0000027 ... P60438 37992713
    755424 7y7h:e (2.51) BS01 rna ? GO:0001070 ... P60723 37992713
    755425 7y7h:f (2.51) BS01 rna ? GO:0000027 ... P62399 37992713
    755426 7y7h:f (2.51) BS02 rna ? GO:0000027 ... P62399 37992713
    755427 7y7h:f (2.51) BS03 rna ? GO:0000027 ... P62399 37992713
    755428 7y7h:g (2.51) BS01 rna ? GO:0000027 ... P0AG55 37992713
    755429 7y7h:h (2.51) BS01 rna ? GO:0002181 ... P0A7R1 37992713
    755430 7y7h:i (2.51) BS01 rna ? GO:0002181 ... P0AA10 37992713
    755431 7y7h:j (2.51) BS01 rna ? GO:0002181 ... P0ADY3 37992713
    755432 7y7h:j (2.51) BS02 rna ? GO:0002181 ... P0ADY3 37992713
    755433 7y7h:k (2.51) BS01 rna ? GO:0002181 ... P02413 37992713
    755434 7y7h:l (2.51) BS01 rna ? GO:0000027 ... P0ADY7 37992713
    755435 7y7h:l (2.51) BS02 rna ? GO:0000027 ... P0ADY7 37992713
    755436 7y7h:l (2.51) BS03 rna ? GO:0000027 ... P0ADY7 37992713
    755437 7y7h:m (2.51) BS01 rna ? GO:0000027 ... P0AG44 37992713
    755438 7y7h:n (2.51) BS01 rna ? GO:0002181 ... P0C018 37992713
    755439 7y7h:n (2.51) BS02 rna ? GO:0002181 ... P0C018 37992713
    755440 7y7h:o (2.51) BS01 rna ? GO:0000027 ... P0A7K6 37992713
    755441 7y7h:o (2.51) BS02 rna ? GO:0000027 ... P0A7K6 37992713
    755442 7y7h:p (2.51) BS01 rna ? GO:0000027 ... P0A7L3 37992713
    755443 7y7h:q (2.51) BS01 rna ? GO:0002181 ... P0AG48 37992713
    755444 7y7h:r (2.51) BS01 rna ? GO:0002181 ... P61175 37992713
    755445 7y7h:s (2.51) BS01 rna ? GO:0000027 ... P0ADZ0 37992713
    755446 7y7h:t (2.51) BS01 rna ? GO:0000027 ... P60624 37992713
    755447 7y7h:u (2.51) BS01 rna ? GO:0000027 ... P68919 37992713
    755448 7y7h:v (2.51) BS01 rna ? GO:0000027 ... P0A7L8 37992713
    755449 7y7h:v (2.51) BS02 rna ? GO:0000027 ... P0A7L8 37992713
    755450 7y7h:v (2.51) BS03 rna ? GO:0000027 ... P0A7L8 37992713
    755451 7y7h:w (2.51) BS01 rna ? GO:0000027 ... P0A7M2 37992713
    755452 7y7h:x (2.51) BS01 rna ? GO:0000027 ... P0A7M6 37992713
    755453 7y7h:y (2.51) BS01 rna ? GO:0000027 ... P0AG51 37992713
    755454 7y7h:z (2.51) BS01 rna ? GO:0000027 ... P0A7N4 37992713
    755455 7y7i:A (3.42) BS01 dna ? GO:0000786 ... P68431
    Q6XXM1
    N/A
    755456 7y7i:A (3.42) BS02 dna ? GO:0000786 ... P68431
    Q6XXM1
    N/A
    755457 7y7i:B (3.42) BS01 dna ? GO:0000781 ... P62805 N/A
    755458 7y7i:C (3.42) BS01 dna ? GO:0000786 ... P04908 N/A
    755459 7y7i:C (3.42) BS02 dna ? GO:0000786 ... P04908 N/A
    755460 7y7i:D (3.42) BS01 dna ? GO:0000786 ... P06899 N/A
    755461 7y7i:D (3.42) BS02 dna ? GO:0000786 ... P06899 N/A
    755462 7y7i:E (3.42) BS01 dna ? GO:0000786 ... P68431
    Q6XXM1
    N/A
    755463 7y7i:E (3.42) BS02 dna ? GO:0000786 ... P68431
    Q6XXM1
    N/A
    755464 7y7i:F (3.42) BS01 dna ? GO:0000781 ... P62805 N/A
    755465 7y7i:F (3.42) BS02 dna ? GO:0000781 ... P62805 N/A
    755466 7y7i:G (3.42) BS01 dna ? GO:0000786 ... P04908 N/A
    755467 7y7i:G (3.42) BS02 dna ? GO:0000786 ... P04908 N/A
    755468 7y7i:H (3.42) BS01 dna ? GO:0000786 ... P06899 N/A
    755469 7y7i:H (3.42) BS02 dna ? GO:0000786 ... P06899 N/A
    755470 7y7l:A (-1.00) BS01 ZN ? GO:0008270 ... Q8TCF1 38537699
    755471 7y7l:A (-1.00) BS02 ZN ? GO:0008270 ... Q8TCF1 38537699
    755472 7y7o:A (1.9) BS01 ZN 3.1.-.- GO:0004222 ... P67136 36457189
    755473 7y7p:A (2.7) BS01 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755474 7y7p:A (2.7) BS02 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755475 7y7p:A (2.7) BS03 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755476 7y7p:A (2.7) BS04 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755477 7y7p:A (2.7) BS05 ZAN 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755478 7y7p:B (2.7) BS01 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755479 7y7p:B (2.7) BS02 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755480 7y7p:B (2.7) BS03 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755481 7y7p:B (2.7) BS04 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755482 7y7p:B (2.7) BS05 ZAN 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755483 7y7q:A (2.05) BS01 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755484 7y7q:A (2.05) BS02 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755485 7y7q:A (2.05) BS03 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755486 7y7q:A (2.05) BS04 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755487 7y7q:A (2.05) BS05 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755488 7y7q:A (2.05) BS06 GTP 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755489 7y7q:B (2.05) BS01 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755490 7y7q:B (2.05) BS02 GTP 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755491 7y7q:B (2.05) BS03 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755492 7y7q:B (2.05) BS04 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755493 7y7q:B (2.05) BS05 GTP 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755494 7y7r:A (2.1) BS01 dna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755495 7y7r:A (2.1) BS02 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755496 7y7r:A (2.1) BS03 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755497 7y7r:A (2.1) BS04 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755498 7y7r:A (2.1) BS05 GTP 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755499 7y7r:B (2.1) BS01 dna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755500 7y7r:B (2.1) BS02 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755501 7y7r:B (2.1) BS03 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755502 7y7r:B (2.1) BS04 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755503 7y7r:B (2.1) BS05 GTP 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755504 7y7s:A (2.7) BS01 dna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755505 7y7s:A (2.7) BS02 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755506 7y7s:A (2.7) BS03 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755507 7y7s:A (2.7) BS04 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755508 7y7s:A (2.7) BS05 ZAN 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755509 7y7s:B (2.7) BS01 dna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755510 7y7s:B (2.7) BS02 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755511 7y7s:B (2.7) BS03 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755512 7y7s:B (2.7) BS04 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755513 7y7s:B (2.7) BS05 ZAN 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755514 7y7t:A (2.5) BS01 dna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755515 7y7t:A (2.5) BS02 rna 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755516 7y7t:A (2.5) BS03 GTP 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755517 7y7t:A (2.5) BS04 MG 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755518 7y7t:A (2.5) BS05 MG 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755519 7y7t:B (2.5) BS01 MG 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755520 7y7t:B (2.5) BS02 MG 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755521 7y7t:B (2.5) BS03 ATP 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    755522 7y7u:A (1.89) BS01 ZN ? N/A A0ACD6B8Z8 36071959
    755523 7y7u:A (1.89) BS02 ZN ? N/A A0ACD6B8Z8 36071959
    755524 7y7u:B (1.89) BS01 ZN ? N/A A0ACD6B8Z8 36071959
    755525 7y7u:B (1.89) BS02 ZN ? N/A A0ACD6B8Z8 36071959
    755526 7y7w:A (2.4) BS01 ABU ? GO:0003333 ... P30531 37400655
    755527 7y7w:A (2.4) BS02 NA ? GO:0003333 ... P30531 37400655
    755528 7y7w:A (2.4) BS03 NA ? GO:0003333 ... P30531 37400655
    755529 7y7y:A (2.4) BS01 ID7 ? GO:0003333 ... P30531 37400655
    755530 7y7y:A (2.4) BS02 NA ? GO:0003333 ... P30531 37400655
    755531 7y7y:A (2.4) BS03 NA ? GO:0003333 ... P30531 37400655
    755532 7y7z:A (3.2) BS01 TGI ? GO:0003333 ... P30531 37400655
    755533 7y80:A (2.71) BS01 rna ? N/A A0A0B0EGF3 36477448
    755534 7y80:A (2.71) BS02 ZN ? N/A A0A0B0EGF3 36477448
    755535 7y80:A (2.71) BS03 ZN ? N/A A0A0B0EGF3 36477448
    755536 7y80:A (2.71) BS04 ZN ? N/A A0A0B0EGF3 36477448
    755537 7y80:A (2.71) BS05 ZN ? N/A A0A0B0EGF3 36477448
    755538 7y80:A (2.71) BS06 MG ? N/A A0A0B0EGF3 36477448
    755539 7y81:A (2.54) BS01 rna ? N/A A0A0B0EGF3 36477448
    755540 7y81:A (2.54) BS02 rna ? N/A A0A0B0EGF3 36477448
    755541 7y81:A (2.54) BS03 ZN ? N/A A0A0B0EGF3 36477448
    755542 7y81:A (2.54) BS04 ZN ? N/A A0A0B0EGF3 36477448
    755543 7y81:A (2.54) BS05 ZN ? N/A A0A0B0EGF3 36477448
    755544 7y81:A (2.54) BS06 MG ? N/A A0A0B0EGF3 36477448
    755545 7y81:A (2.54) BS07 ZN ? N/A A0A0B0EGF3 36477448
    755546 7y82:A (2.83) BS01 rna ? N/A A0A0B0EGF3 36477448
    755547 7y82:A (2.83) BS02 rna ? N/A A0A0B0EGF3 36477448
    755548 7y82:A (2.83) BS03 ZN ? N/A A0A0B0EGF3 36477448
    755549 7y82:A (2.83) BS04 ZN ? N/A A0A0B0EGF3 36477448
    755550 7y82:A (2.83) BS05 MG ? N/A A0A0B0EGF3 36477448
    755551 7y82:A (2.83) BS06 ZN ? N/A A0A0B0EGF3 36477448
    755552 7y83:A (2.93) BS01 rna ? N/A A0A0B0EGF3 36477448
    755553 7y83:A (2.93) BS02 rna ? N/A A0A0B0EGF3 36477448
    755554 7y83:A (2.93) BS03 ZN ? N/A A0A0B0EGF3 36477448
    755555 7y83:A (2.93) BS04 ZN ? N/A A0A0B0EGF3 36477448
    755556 7y83:A (2.93) BS05 ZN ? N/A A0A0B0EGF3 36477448
    755557 7y83:A (2.93) BS06 MG ? N/A A0A0B0EGF3 36477448
    755558 7y83:A (2.93) BS07 ZN ? N/A A0A0B0EGF3 36477448
    755559 7y83:D (2.93) BS01 rna ? N/A A0A0B0EKL4 36477448
    755560 7y84:A (2.61) BS01 rna ? N/A A0A0B0EGF3 36477448
    755561 7y84:A (2.61) BS02 ZN ? N/A A0A0B0EGF3 36477448
    755562 7y84:A (2.61) BS03 ZN ? N/A A0A0B0EGF3 36477448
    755563 7y84:A (2.61) BS04 ZN ? N/A A0A0B0EGF3 36477448
    755564 7y84:A (2.61) BS05 ZN ? N/A A0A0B0EGF3 36477448
    755565 7y84:A (2.61) BS06 MG ? N/A A0A0B0EGF3 36477448
    755566 7y85:A (2.73) BS01 rna ? N/A A0A0B0EGF3 36477448
    755567 7y85:A (2.73) BS02 rna ? N/A A0A0B0EGF3 36477448
    755568 7y85:A (2.73) BS03 ZN ? N/A A0A0B0EGF3 36477448
    755569 7y85:A (2.73) BS04 ZN ? N/A A0A0B0EGF3 36477448
    755570 7y85:A (2.73) BS05 ZN ? N/A A0A0B0EGF3 36477448
    755571 7y85:A (2.73) BS06 MG ? N/A A0A0B0EGF3 36477448
    755572 7y85:A (2.73) BS07 ZN ? N/A A0A0B0EGF3 36477448
    755573 7y85:D (2.73) BS01 rna ? N/A A0A0B0EKL4 36477448
    755574 7y88:A (1.87) BS01 GRG ? GO:0010333 ... F8JK18 35819825
    755575 7y88:A (1.87) BS02 MG ? GO:0010333 ... F8JK18 35819825
    755576 7y8a:1 (2.71) BS01 CLA N/A GO:0009765 ... N/A 36943796
    755577 7y8a:1 (2.71) BS02 CLA N/A GO:0009765 ... N/A 36943796
    755578 7y8a:1 (2.71) BS03 CLA N/A GO:0009765 ... N/A 36943796
    755579 7y8a:1 (2.71) BS04 CLA N/A GO:0009765 ... N/A 36943796
    755580 7y8a:1 (2.71) BS05 CLA N/A GO:0009765 ... N/A 36943796
    755581 7y8a:1 (2.71) BS06 CLA N/A GO:0009765 ... N/A 36943796
    755582 7y8a:1 (2.71) BS07 CLA N/A GO:0009765 ... N/A 36943796
    755583 7y8a:1 (2.71) BS08 CLA N/A GO:0009765 ... N/A 36943796
    755584 7y8a:1 (2.71) BS09 CLA N/A GO:0009765 ... N/A 36943796
    755585 7y8a:1 (2.71) BS10 KC2 N/A GO:0009765 ... N/A 36943796
    755586 7y8a:1 (2.71) BS11 CLA N/A GO:0009765 ... N/A 36943796
    755587 7y8a:1 (2.71) BS12 CLA N/A GO:0009765 ... N/A 36943796
    755588 7y8a:1 (2.71) BS13 CLA N/A GO:0009765 ... N/A 36943796
    755589 7y8a:1 (2.71) BS14 II0 N/A GO:0009765 ... N/A 36943796
    755590 7y8a:1 (2.71) BS15 II3 N/A GO:0009765 ... N/A 36943796
    755591 7y8a:1 (2.71) BS16 II0 N/A GO:0009765 ... N/A 36943796
    755592 7y8a:1 (2.71) BS17 II0 N/A GO:0009765 ... N/A 36943796
    755593 7y8a:1 (2.71) BS18 IHT N/A GO:0009765 ... N/A 36943796
    755594 7y8a:1 (2.71) BS19 II0 N/A GO:0009765 ... N/A 36943796
    755595 7y8a:2 (2.71) BS01 II0 N/A GO:0009765 ... N/A 36943796
    755596 7y8a:2 (2.71) BS02 CLA N/A GO:0009765 ... N/A 36943796
    755597 7y8a:2 (2.71) BS03 CLA N/A GO:0009765 ... N/A 36943796
    755598 7y8a:2 (2.71) BS04 CLA N/A GO:0009765 ... N/A 36943796
    755599 7y8a:2 (2.71) BS05 CLA N/A GO:0009765 ... N/A 36943796
    755600 7y8a:2 (2.71) BS06 CLA N/A GO:0009765 ... N/A 36943796

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).