SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    755601 7yq8:B (3.9) BS04 EVP 5.6.2.2 GO:0000712 ... Q02880 38097570
    755602 7yq9:A (1.5) BS01 JLX ? N/A O60885 37402749
    755603 7yq9:B (1.5) BS01 JLX ? N/A O60885 37402749
    755604 7yqa:A (1.85) BS01 MG 4.1.2.42 GO:0016829 ... A0A1C9ZZ39 36748339
    755605 7yqa:B (1.85) BS01 MG 4.1.2.42 GO:0016829 ... A0A1C9ZZ39 36748339
    755606 7yqa:C (1.85) BS01 MG 4.1.2.42 GO:0016829 ... A0A1C9ZZ39 36748339
    755607 7yqa:D (1.85) BS01 MG 4.1.2.42 GO:0016829 ... A0A1C9ZZ39 36748339
    755608 7yqf:A (1.54) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37094153
    755609 7yqf:A (1.54) BS02 JN0 3.1.4.53 GO:0004114 ... Q08499 37094153
    755610 7yqf:B (1.54) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37094153
    755611 7yqf:B (1.54) BS02 JN0 3.1.4.53 GO:0004114 ... Q08499 37094153
    755612 7yqg:A (1.698) BS01 FUC ? N/A A0A2U9GLY1 36216242
    755613 7yqg:A (1.698) BS02 FUC ? N/A A0A2U9GLY1 36216242
    755614 7yqg:B (1.698) BS01 FUC ? N/A A0A2U9GLY1 36216242
    755615 7yqk:A (3.38) BS01 dna ? GO:0000786 ... P68431 36166692
    755616 7yqk:A (3.38) BS02 dna ? GO:0000786 ... P68431 36166692
    755617 7yqk:B (3.38) BS01 dna ? GO:0003677 ... P62805 36166692
    755618 7yqk:B (3.38) BS02 dna ? GO:0003677 ... P62805 36166692
    755619 7yqk:C (3.38) BS01 dna ? GO:0000786 ... P16104 36166692
    755620 7yqk:C (3.38) BS02 dna ? GO:0000786 ... P16104 36166692
    755621 7yqk:D (3.38) BS01 dna ? GO:0000786 ... O60814 36166692
    755622 7yqk:D (3.38) BS02 dna ? GO:0000786 ... O60814 36166692
    755623 7yqk:E (3.38) BS01 dna ? GO:0000786 ... P68431 36166692
    755624 7yqk:E (3.38) BS02 dna ? GO:0000786 ... P68431 36166692
    755625 7yqk:F (3.38) BS01 dna ? GO:0003677 ... P62805 36166692
    755626 7yqk:F (3.38) BS02 dna ? GO:0003677 ... P62805 36166692
    755627 7yqk:G (3.38) BS01 dna ? GO:0000786 ... P16104 36166692
    755628 7yqk:G (3.38) BS02 dna ? GO:0000786 ... P16104 36166692
    755629 7yqk:G (3.38) BS03 peptide ? GO:0000786 ... P16104 36166692
    755630 7yqk:H (3.38) BS01 dna ? GO:0000786 ... O60814 36166692
    755631 7yqk:H (3.38) BS02 dna ? GO:0000786 ... O60814 36166692
    755632 7yqk:H (3.38) BS03 peptide ? GO:0000786 ... O60814 36166692
    755633 7yqk:O (3.38) BS01 peptide ? N/A P0CG47 36166692
    755634 7yqq:A (2.22) BS01 NMN 2.4.2.12 GO:0009435 ... A0A0H2X5R2 38429435
    755635 7yqq:B (2.22) BS01 NMN 2.4.2.12 GO:0009435 ... A0A0H2X5R2 38429435
    755636 7yqr:A (2.0) BS01 NCA 2.4.2.12 GO:0009435 ... A0A0H2X5R2 38429435
    755637 7yqr:A (2.0) BS02 NCA 2.4.2.12 GO:0009435 ... A0A0H2X5R2 38429435
    755638 7yqr:B (2.0) BS01 NCA 2.4.2.12 GO:0009435 ... A0A0H2X5R2 38429435
    755639 7yqs:A (1.25) BS01 MAN ? GO:0016829 ... A0A8D5PZ14 38382672
    755640 7yqs:A (1.25) BS02 MAN ? GO:0016829 ... A0A8D5PZ14 38382672
    755641 7yqs:A (1.25) BS03 RAM ? GO:0016829 ... A0A8D5PZ14 38382672
    755642 7yqs:A (1.25) BS04 ACT ? GO:0016829 ... A0A8D5PZ14 38382672
    755643 7yqs:A (1.25) BS05 CA ? GO:0016829 ... A0A8D5PZ14 38382672
    755644 7yqx:I (3.72) BS01 FUC N/A N/A N/A 36270286
    755645 7yqy:I (3.74) BS01 FUC N/A N/A N/A 36270286
    755646 7yqy:J (3.74) BS01 FUC N/A N/A N/A 36270286
    755647 7yqz:J (3.84) BS01 FUC N/A N/A N/A 36270286
    755648 7yr2:A (3.3) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 36270286
    755649 7yr3:D (3.52) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 36270286
    755650 7yr3:G (3.52) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 36270286
    755651 7yr6:B (4.8) BS01 rna ? GO:0003723 ... O69078 36828938
    755652 7yr6:C (4.8) BS01 rna ? GO:0003723 ... O69078 36828938
    755653 7yr6:D (4.8) BS01 rna ? GO:0003723 ... O69078 36828938
    755654 7yr6:E (4.8) BS01 rna ? GO:0003723 ... O69078 36828938
    755655 7yr7:B (3.8) BS01 rna ? GO:0003723 ... O69078 36828938
    755656 7yr7:C (3.8) BS01 rna ? GO:0003723 ... O69078 36828938
    755657 7yr7:D (3.8) BS01 rna ? GO:0003723 ... O69078 36828938
    755658 7yr7:E (3.8) BS01 rna ? GO:0003723 ... O69078 36828938
    755659 7yr7:F (3.8) BS01 rna ? GO:0003723 ... O69078 36828938
    755660 7yr7:G (3.8) BS01 rna ? GO:0003723 ... O69078 36828938
    755661 7yr8:A (3.2) BS01 rna ? GO:0019013 ... G8EFI1 37124400
    755662 7yr9:A (1.7) BS01 ZN 7.1.1.8 GO:0008121 ... D1MZ11 37689761
    755663 7yr9:A (1.7) BS02 CL 7.1.1.8 GO:0008121 ... D1MZ11 37689761
    755664 7yr9:A (1.7) BS03 CL 7.1.1.8 GO:0008121 ... D1MZ11 37689761
    755665 7yr9:B (1.7) BS01 ZN 7.1.1.8 GO:0008121 ... D1MZ11 37689761
    755666 7yr9:B (1.7) BS02 CL 7.1.1.8 GO:0008121 ... D1MZ11 37689761
    755667 7yr9:B (1.7) BS03 CL 7.1.1.8 GO:0008121 ... D1MZ11 37689761
    755668 7yra:A (1.79) BS01 FES 7.1.1.8 GO:0008121 ... D1MZ11 37689761
    755669 7yra:B (1.79) BS01 FES 7.1.1.8 GO:0008121 ... D1MZ11 37689761
    755670 7yrb:A (1.51) BS01 ZN ? GO:0008270 ... B3KUR1 N/A
    755671 7yrb:A (1.51) BS02 ZN ? GO:0008270 ... B3KUR1 N/A
    755672 7yrb:A (1.51) BS03 ZN ? GO:0008270 ... B3KUR1 N/A
    755673 7yrd:A (3.2) BS01 dna ? GO:0000786 ... Q71DI3 37536340
    755674 7yrd:A (3.2) BS02 dna ? GO:0000786 ... Q71DI3 37536340
    755675 7yrd:B (3.2) BS01 dna ? GO:0000781 ... P62805 37536340
    755676 7yrd:B (3.2) BS02 dna ? GO:0000781 ... P62805 37536340
    755677 7yrd:C (3.2) BS01 dna ? GO:0000786 ... P0C0S5 37536340
    755678 7yrd:C (3.2) BS02 dna ? GO:0000786 ... P0C0S5 37536340
    755679 7yrd:D (3.2) BS01 dna ? GO:0000786 ... P06899 37536340
    755680 7yrd:D (3.2) BS02 dna ? GO:0000786 ... P06899 37536340
    755681 7yrd:E (3.2) BS01 dna ? GO:0000786 ... Q71DI3 37536340
    755682 7yrd:E (3.2) BS02 dna ? GO:0000786 ... Q71DI3 37536340
    755683 7yrd:F (3.2) BS01 dna ? GO:0000781 ... P62805 37536340
    755684 7yrd:F (3.2) BS02 dna ? GO:0000781 ... P62805 37536340
    755685 7yrd:G (3.2) BS01 dna ? GO:0000786 ... P0C0S5 37536340
    755686 7yrd:G (3.2) BS02 dna ? GO:0000786 ... P0C0S5 37536340
    755687 7yrd:H (3.2) BS01 dna ? GO:0000786 ... P06899 37536340
    755688 7yrd:H (3.2) BS02 dna ? GO:0000786 ... P06899 37536340
    755689 7yrd:K (3.2) BS01 dna 2.1.1.361
    2.1.1.362
    GO:0042799 ... Q4FZB7 37536340
    755690 7yrd:K (3.2) BS02 ZN 2.1.1.361
    2.1.1.362
    GO:0042799 ... Q4FZB7 37536340
    755691 7yrd:K (3.2) BS03 SAM 2.1.1.361
    2.1.1.362
    GO:0042799 ... Q4FZB7 37536340
    755692 7yrg:A (4.2) BS01 dna ? GO:0000786 ... P84233 37536340
    755693 7yrg:A (4.2) BS02 dna ? GO:0000786 ... P84233 37536340
    755694 7yrg:B (4.2) BS01 dna ? GO:0000786 ... P62799 37536340
    755695 7yrg:B (4.2) BS02 dna ? GO:0000786 ... P62799 37536340
    755696 7yrg:C (4.2) BS01 dna ? GO:0000786 ... P0C0S5 37536340
    755697 7yrg:C (4.2) BS02 dna ? GO:0000786 ... P0C0S5 37536340
    755698 7yrg:D (4.2) BS01 dna ? GO:0000786 ... P02281 37536340
    755699 7yrg:D (4.2) BS02 dna ? GO:0000786 ... P02281 37536340
    755700 7yrg:E (4.2) BS01 dna ? GO:0000786 ... P84233 37536340
    755701 7yrg:E (4.2) BS02 dna ? GO:0000786 ... P84233 37536340
    755702 7yrg:F (4.2) BS01 dna ? GO:0000786 ... P62799 37536340
    755703 7yrg:F (4.2) BS02 dna ? GO:0000786 ... P62799 37536340
    755704 7yrg:G (4.2) BS01 dna ? GO:0000786 ... P0C0S5 37536340
    755705 7yrg:G (4.2) BS02 dna ? GO:0000786 ... P0C0S5 37536340
    755706 7yrg:H (4.2) BS01 dna ? GO:0000786 ... P02281 37536340
    755707 7yrg:H (4.2) BS02 dna ? GO:0000786 ... P02281 37536340
    755708 7yrg:K (4.2) BS01 dna 2.1.1.361
    2.1.1.362
    GO:0042799 ... Q4FZB7 37536340
    755709 7yrg:K (4.2) BS02 ZN 2.1.1.361
    2.1.1.362
    GO:0042799 ... Q4FZB7 37536340
    755710 7yrg:K (4.2) BS03 SAM 2.1.1.361
    2.1.1.362
    GO:0042799 ... Q4FZB7 37536340
    755711 7yrg:L (4.2) BS01 dna 2.1.1.361
    2.1.1.362
    GO:0042799 ... Q4FZB7 37536340
    755712 7yrg:L (4.2) BS02 dna 2.1.1.361
    2.1.1.362
    GO:0042799 ... Q4FZB7 37536340
    755713 7yrg:L (4.2) BS03 ZN 2.1.1.361
    2.1.1.362
    GO:0042799 ... Q4FZB7 37536340
    755714 7yrg:L (4.2) BS04 SAM 2.1.1.361
    2.1.1.362
    GO:0042799 ... Q4FZB7 37536340
    755715 7yri:A (2.61) BS01 SAM 2.1.1.- N/A Q9W138 N/A
    755716 7yri:C (2.61) BS01 SAM 2.1.1.- N/A Q9W138 N/A
    755717 7yri:D (2.61) BS01 SAM 2.1.1.- N/A Q9W138 N/A
    755718 7yri:J (2.61) BS01 SAM 2.1.1.- N/A Q9W138 N/A
    755719 7yrj:A (2.35) BS01 SFG 2.1.1.- N/A Q9W138 N/A
    755720 7yrj:B (2.35) BS01 SFG 2.1.1.- N/A Q9W138 N/A
    755721 7yrj:C (2.35) BS01 SFG 2.1.1.- N/A Q9W138 N/A
    755722 7yrj:D (2.35) BS01 SFG 2.1.1.- N/A Q9W138 N/A
    755723 7yrk:A (0.92) BS01 JI6 3.2.1.17 GO:0003796 ... P00698 37106030
    755724 7yrk:A (0.92) BS02 74C 3.2.1.17 GO:0003796 ... P00698 37106030
    755725 7yrp:A (2.0) BS01 ZN 3.5.2.6 GO:0046872 ... F8UTU0 N/A
    755726 7yrp:A (2.0) BS02 ZN 3.5.2.6 GO:0046872 ... F8UTU0 N/A
    755727 7yrp:B (2.0) BS01 ZN 3.5.2.6 GO:0046872 ... F8UTU0 N/A
    755728 7yrp:B (2.0) BS02 ZN 3.5.2.6 GO:0046872 ... F8UTU0 N/A
    755729 7yrq:A (3.35) BS01 K9G 3.1.2.-
    7.6.2.-
    GO:0000038 ... P33897 36810450
    755730 7yrq:B (3.35) BS01 K9G 3.1.2.-
    7.6.2.-
    GO:0000038 ... P33897 36810450
    755731 7yrs:A (2.802) BS01 ZN 5.3.1.17 GO:0008270 ... C2JUP1 38239764
    755732 7yrs:B (2.802) BS01 ZN 5.3.1.17 GO:0008270 ... C2JUP1 38239764
    755733 7yrs:C (2.802) BS01 ZN 5.3.1.17 GO:0008270 ... C2JUP1 38239764
    755734 7yrs:D (2.802) BS01 ZN 5.3.1.17 GO:0008270 ... C2JUP1 38239764
    755735 7yrs:E (2.802) BS01 ZN 5.3.1.17 GO:0008270 ... C2JUP1 38239764
    755736 7yrs:F (2.802) BS01 ZN 5.3.1.17 GO:0008270 ... C2JUP1 38239764
    755737 7yry:A (3.0) BS01 ATP 7.1.2.2 GO:0005524 ... A3M142 37318822
    755738 7yry:B (3.0) BS01 ATP 7.1.2.2 GO:0005524 ... A3M142 37318822
    755739 7yry:C (3.0) BS01 ATP 7.1.2.2 GO:0005524 ... A3M142 37318822
    755740 7yry:D (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... A3M144 37318822
    755741 7yrz:A (1.79) BS01 4WI 2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0C6X1 36965419
    755742 7yrz:B (1.79) BS01 4WI 2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0C6X1 36965419
    755743 7ys6:A (3.0) BS01 SRO ? GO:0004930 ... P50406 36989299
    755744 7ys8:A (2.02) BS01 NAD 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755745 7ys8:B (2.02) BS01 NAD 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755746 7ys9:A (1.65) BS01 NAD 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755747 7ys9:A (1.65) BS02 UPG 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755748 7ys9:A (1.65) BS03 GDU 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755749 7ys9:B (1.65) BS01 NAD 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755750 7ys9:B (1.65) BS02 GDU 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755751 7ysa:A (1.95) BS01 NAD 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755752 7ysa:A (1.95) BS02 UPG 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755753 7ysa:B (1.95) BS01 NAD 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755754 7ysa:B (1.95) BS02 GDU 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755755 7yse:A (2.907) BS01 rna 6.1.1.14 GO:0000166 ... P00960 36753552
    755756 7yse:A (2.907) BS02 JPO 6.1.1.14 GO:0000166 ... P00960 36753552
    755757 7yse:A (2.907) BS03 MG 6.1.1.14 GO:0000166 ... P00960 36753552
    755758 7yse:B (2.907) BS01 rna 6.1.1.14 GO:0000166 ... P00960 36753552
    755759 7yse:B (2.907) BS02 JPO 6.1.1.14 GO:0000166 ... P00960 36753552
    755760 7yse:B (2.907) BS03 MG 6.1.1.14 GO:0000166 ... P00960 36753552
    755761 7yse:C (2.907) BS01 rna 6.1.1.14 GO:0000049 ... P00961 36753552
    755762 7yse:D (2.907) BS01 rna 6.1.1.14 GO:0000049 ... P00961 36753552
    755763 7ysf:A (2.4) BS01 dna ? N/A Q96C55 38086788
    755764 7ysf:A (2.4) BS02 dna ? N/A Q96C55 38086788
    755765 7ysf:A (2.4) BS03 ZN ? N/A Q96C55 38086788
    755766 7ysf:A (2.4) BS04 ZN ? N/A Q96C55 38086788
    755767 7ysf:A (2.4) BS05 ZN ? N/A Q96C55 38086788
    755768 7ysf:A (2.4) BS06 ZN ? N/A Q96C55 38086788
    755769 7ysh:A (2.74) BS01 ZN 3.2.1.31 GO:0003085 ... Q9UEF7 37286607
    755770 7ysh:B (2.74) BS01 SGN ? GO:0000165 ... Q9GZV9 37286607
    755771 7ysh:D (2.74) BS01 SGN 2.7.10.1 N/A P11362 37286607
    755772 7ysh:E (2.74) BS01 IDS 2.7.10.1 N/A P11362 37286607
    755773 7ysh:E (2.74) BS02 SGN 2.7.10.1 N/A P11362 37286607
    755774 7ysi:A (1.202) BS01 ZN 1.8.1.8 GO:0005737 ... A0A219CD23 36752373
    755775 7ysi:A (1.202) BS02 ZN 1.8.1.8 GO:0005737 ... A0A219CD23 36752373
    755776 7ysm:A (1.87) BS01 NAD 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755777 7ysm:A (1.87) BS02 UD2 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755778 7ysm:B (1.87) BS01 NAD 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755779 7ysm:B (1.87) BS02 UD2 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755780 7ysn:A (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 37749104
    755781 7ysn:B (3.5) BS01 G2P ? GO:0000226 ... P02554 37749104
    755782 7yso:A (3.6) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 37749104
    755783 7yso:B (3.6) BS01 GDP ? GO:0000226 ... P02554 37749104
    755784 7ysp:A (3.9) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 37749104
    755785 7ysp:B (3.9) BS01 GDP ? GO:0000226 ... P02554 37749104
    755786 7ysq:A (6.8) BS01 GTP 3.6.5.- GO:0000226 ... P06603 37749104
    755787 7ysq:B (6.8) BS01 GSP ? GO:0000226 ... Q24560 37749104
    755788 7ysq:B (6.8) BS02 GTP ? GO:0000226 ... Q24560 37749104
    755789 7ysq:D (6.8) BS01 GTP 3.6.5.- GO:0000226 ... P06603 37749104
    755790 7ysq:E (6.8) BS01 GTP 3.6.5.- GO:0000226 ... P06603 37749104
    755791 7ysq:F (6.8) BS01 GTP 3.6.5.- GO:0000226 ... P06603 37749104
    755792 7ysq:G (6.8) BS01 GSP ? GO:0000226 ... Q24560 37749104
    755793 7ysq:H (6.8) BS01 GSP ? GO:0000226 ... Q24560 37749104
    755794 7ysq:I (6.8) BS01 GTP ? GO:0000226 ... Q24560 37749104
    755795 7ysq:I (6.8) BS02 GSP ? GO:0000226 ... Q24560 37749104
    755796 7ysr:A (4.3) BS01 GTP 3.6.5.- GO:0000226 ... P06603 37749104
    755797 7ysr:B (4.3) BS01 GSP ? GO:0000226 ... Q24560 37749104
    755798 7ysr:C (4.3) BS01 GTP 3.6.5.- GO:0000226 ... P06603 37749104
    755799 7ysr:D (4.3) BS01 GSP ? GO:0000226 ... Q24560 37749104
    755800 7yst:A (1.88) BS01 NAD 5.1.3.2 GO:0003978 ... P9WN67 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).