SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    755801 7yst:A (1.88) BS02 UPG 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755802 7yst:B (1.88) BS01 NAD 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755803 7yst:B (1.88) BS02 UPG 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755804 7yst:B (1.88) BS03 GDU 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755805 7ysu:A (3.2) BS01 ZN 3.2.1.31 GO:0003085 ... Q9UEF7 37286607
    755806 7ysu:B (3.2) BS01 SGN ? GO:0008083 ... Q9GZV9 37286607
    755807 7ysu:C (3.2) BS01 IDS 2.7.10.1 N/A P22607 37286607
    755808 7ysu:C (3.2) BS02 SGN 2.7.10.1 N/A P22607 37286607
    755809 7ysu:C (3.2) BS03 IDS 2.7.10.1 N/A P22607 37286607
    755810 7ysu:E (3.2) BS01 SGN 2.7.10.1 N/A P22607 37286607
    755811 7ysu:E (3.2) BS02 SGN 2.7.10.1 N/A P22607 37286607
    755812 7ysu:E (3.2) BS03 IDS 2.7.10.1 N/A P22607 37286607
    755813 7ysu:E (3.2) BS04 SGN 2.7.10.1 N/A P22607 37286607
    755814 7ysu:E (3.2) BS05 CU 2.7.10.1 N/A P22607 37286607
    755815 7ysw:A (3.03) BS01 ZN 3.2.1.31 GO:0003085 ... Q9UEF7 37286607
    755816 7ysw:B (3.03) BS01 SGN ? GO:0008083 ... Q9GZV9 37286607
    755817 7ysw:C (3.03) BS01 IDS 2.7.10.1 N/A P22455 37286607
    755818 7ysw:C (3.03) BS02 SGN 2.7.10.1 N/A P22455 37286607
    755819 7ysw:C (3.03) BS03 IDS 2.7.10.1 N/A P22455 37286607
    755820 7ysw:E (3.03) BS01 SGN 2.7.10.1 N/A P22455 37286607
    755821 7ysw:E (3.03) BS02 SGN 2.7.10.1 N/A P22455 37286607
    755822 7ysw:E (3.03) BS03 SGN 2.7.10.1 N/A P22455 37286607
    755823 7ysx:A (1.65) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37094153
    755824 7ysx:A (1.65) BS02 JU3 3.1.4.53 GO:0004114 ... Q08499 37094153
    755825 7ysx:B (1.65) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37094153
    755826 7ysx:B (1.65) BS02 JU3 3.1.4.53 GO:0004114 ... Q08499 37094153
    755827 7ysy:A (2.16) BS01 NAD 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755828 7ysy:A (2.16) BS02 UD2 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755829 7ysy:B (2.16) BS01 NAD 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755830 7ysy:B (2.16) BS02 UD2 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755831 7ysz:A (2.30004) BS01 GDP ? GO:0003924 ... N/A 38718863
    755832 7ysz:A (2.30004) BS02 GDP ? GO:0003924 ... N/A 38718863
    755833 7ysz:B (2.30004) BS01 GDP ? GO:0003924 ... N/A 38718863
    755834 7ysz:B (2.30004) BS02 GDP ? GO:0003924 ... N/A 38718863
    755835 7yt0:A (1.76) BS01 NAD 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755836 7yt0:A (1.76) BS02 GDU 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755837 7yt0:B (1.76) BS01 NAD 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755838 7yt0:B (1.76) BS02 GDU 5.1.3.2 GO:0003978 ... P9WN67 N/A
    755839 7yta:A (2.31) BS01 peptide ? N/A A0A1S4CD95 36149781
    755840 7yta:B (2.31) BS01 peptide ? N/A A0A1S4CD95 36149781
    755841 7yta:C (2.31) BS01 peptide ? N/A A0A1S4CD95 36149781
    755842 7ytb:A (3.0) BS01 RET ? GO:0005216 ... A0A977XLG0 36859551
    755843 7ytb:B (3.0) BS01 RET ? GO:0005216 ... A0A977XLG0 36859551
    755844 7ytf:A (2.65) BS01 45D ? GO:0009579 ... A0A2K8SVQ4 37070859
    755845 7ytj:D (3.0) BS01 IHP 2.7.4.1 GO:0000329 ... P47075 36759618
    755846 7ytj:D (3.0) BS02 IHP 2.7.4.1 GO:0000329 ... P47075 36759618
    755847 7ytj:D (3.0) BS03 IHP 2.7.4.1 GO:0000329 ... P47075 36759618
    755848 7ytj:E (3.0) BS01 IHP ? GO:0000329 ... Q02725 36759618
    755849 7ytl:A (2.62) BS01 FAD ? GO:0000166 ... E1BR24 37739943
    755850 7ytl:A (2.62) BS02 UQ1 ? GO:0000166 ... E1BR24 37739943
    755851 7ytp:A (2.77) BS01 JRI ? GO:0019865 ... B3Y653 37544422
    755852 7ytp:A (2.77) BS02 JRI ? GO:0019865 ... B3Y653 37544422
    755853 7ytp:B (2.77) BS01 JRI ? GO:0019865 ... B3Y653 37544422
    755854 7ytp:B (2.77) BS02 JRI ? GO:0019865 ... B3Y653 37544422
    755855 7ytq:A (1.6) BS01 peptide ? N/A Q9UJ71 N/A
    755856 7ytq:A (1.6) BS02 CA ? N/A Q9UJ71 N/A
    755857 7ytq:A (1.6) BS03 JMI ? N/A Q9UJ71 N/A
    755858 7ytq:B (1.6) BS01 peptide ? N/A Q9UJ71 N/A
    755859 7ytq:B (1.6) BS02 CA ? N/A Q9UJ71 N/A
    755860 7ytq:B (1.6) BS03 JMI ? N/A Q9UJ71 N/A
    755861 7ytq:C (1.6) BS01 TRP ? N/A Q9UJ71 N/A
    755862 7ytq:C (1.6) BS02 CA ? N/A Q9UJ71 N/A
    755863 7ytq:C (1.6) BS03 JMI ? N/A Q9UJ71 N/A
    755864 7ytq:C (1.6) BS04 TRP ? N/A Q9UJ71 N/A
    755865 7ytq:D (1.6) BS01 TRP ? N/A Q9UJ71 N/A
    755866 7ytq:D (1.6) BS02 TRP ? N/A Q9UJ71 N/A
    755867 7ytq:D (1.6) BS03 CA ? N/A Q9UJ71 N/A
    755868 7ytq:D (1.6) BS04 JMI ? N/A Q9UJ71 N/A
    755869 7ytv:A (3.866) BS01 NAP 1.8.1.9 GO:0000166 ... A0A229Y1X4 37037064
    755870 7ytv:A (3.866) BS02 FAD 1.8.1.9 GO:0000166 ... A0A229Y1X4 37037064
    755871 7ytv:B (3.866) BS01 NAP 1.8.1.9 GO:0000166 ... A0A229Y1X4 37037064
    755872 7ytv:B (3.866) BS02 FAD 1.8.1.9 GO:0000166 ... A0A229Y1X4 37037064
    755873 7ytw:A (3.2) BS01 NA ? GO:0005737 ... Q9Z2J0 36914666
    755874 7ytw:A (3.2) BS02 NA ? GO:0005737 ... Q9Z2J0 36914666
    755875 7ytw:A (3.2) BS03 ASC ? GO:0005737 ... Q9Z2J0 36914666
    755876 7ytw:B (3.2) BS01 NA ? GO:0005737 ... Q9Z2J0 36914666
    755877 7ytw:B (3.2) BS02 NA ? GO:0005737 ... Q9Z2J0 36914666
    755878 7ytw:B (3.2) BS03 ASC ? GO:0005737 ... Q9Z2J0 36914666
    755879 7ytx:A (2.9) BS01 JRI ? GO:0002224 ... Q9NR97 37544422
    755880 7ytx:A (2.9) BS02 JRI ? GO:0002224 ... Q9NR97 37544422
    755881 7ytx:B (2.9) BS01 JRI ? GO:0002224 ... Q9NR97 37544422
    755882 7ytx:B (2.9) BS02 JRI ? GO:0002224 ... Q9NR97 37544422
    755883 7yu3:R (3.5) BS01 K6L ? GO:0001965 ... Q92633 36109516
    755884 7yu4:A (3.7) BS01 K6L ? GO:0001965 ... Q92633 36109516
    755885 7yu5:R (3.7) BS01 K6L ? GO:0001965 ... Q92633 36109516
    755886 7yu6:R (3.9) BS01 K6L ? GO:0001965 ... Q92633 36109516
    755887 7yu7:R (4.5) BS01 K6L ? GO:0001965 ... Q92633 36109516
    755888 7yu8:R (5.6) BS01 K6L ? GO:0001965 ... Q92633 36109516
    755889 7yua:A (2.5) BS01 GDP ? GO:0046872 ... G8HX37 N/A
    755890 7yua:A (2.5) BS02 MG ? GO:0046872 ... G8HX37 N/A
    755891 7yua:A (2.5) BS03 MG ? GO:0046872 ... G8HX37 N/A
    755892 7yua:A (2.5) BS04 MG ? GO:0046872 ... G8HX37 N/A
    755893 7yua:B (2.5) BS01 GDP ? GO:0046872 ... G8HX37 N/A
    755894 7yua:B (2.5) BS02 MG ? GO:0046872 ... G8HX37 N/A
    755895 7yua:B (2.5) BS03 MG ? GO:0046872 ... G8HX37 N/A
    755896 7yua:B (2.5) BS04 MG ? GO:0046872 ... G8HX37 N/A
    755897 7yua:C (2.5) BS01 GDP ? GO:0046872 ... G8HX37 N/A
    755898 7yua:C (2.5) BS02 MG ? GO:0046872 ... G8HX37 N/A
    755899 7yua:D (2.5) BS01 GDP ? GO:0046872 ... G8HX37 N/A
    755900 7yua:D (2.5) BS02 MG ? GO:0046872 ... G8HX37 N/A
    755901 7yua:D (2.5) BS03 MG ? GO:0046872 ... G8HX37 N/A
    755902 7yub:R (3.22) BS01 S1P ? GO:0001782 ... Q8IVW8 38123825
    755903 7yud:R (2.98) BS01 J89 ? GO:0001782 ... Q8IVW8 38123825
    755904 7yue:A (2.35) BS01 peptide N/A N/A N/A 36691733
    755905 7yui:B (2.599) BS01 ZN 2.3.2.31 N/A Q9BYM8 37831767
    755906 7yui:B (2.599) BS02 ZN 2.3.2.31 N/A Q9BYM8 37831767
    755907 7yui:B (2.599) BS03 ZN 2.3.2.31 N/A Q9BYM8 37831767
    755908 7yui:B (2.599) BS04 ZN 2.3.2.31 N/A Q9BYM8 37831767
    755909 7yui:B (2.599) BS05 ZN 2.3.2.31 N/A Q9BYM8 37831767
    755910 7yuj:A (1.865) BS01 ZN 2.3.2.31 GO:0008270 ... Q9BYM8 37831767
    755911 7yuj:A (1.865) BS02 ZN 2.3.2.31 GO:0008270 ... Q9BYM8 37831767
    755912 7yuj:A (1.865) BS03 ZN 2.3.2.31 GO:0008270 ... Q9BYM8 37831767
    755913 7yuj:A (1.865) BS04 ZN 2.3.2.31 GO:0008270 ... Q9BYM8 37831767
    755914 7yuj:A (1.865) BS05 ZN 2.3.2.31 GO:0008270 ... Q9BYM8 37831767
    755915 7yuj:B (1.865) BS01 ZN 2.3.2.31 GO:0008270 ... Q9BYM8 37831767
    755916 7yuj:B (1.865) BS02 ZN 2.3.2.31 GO:0008270 ... Q9BYM8 37831767
    755917 7yuj:B (1.865) BS03 ZN 2.3.2.31 GO:0008270 ... Q9BYM8 37831767
    755918 7yuj:B (1.865) BS04 ZN 2.3.2.31 GO:0008270 ... Q9BYM8 37831767
    755919 7yuj:B (1.865) BS05 ZN 2.3.2.31 GO:0008270 ... Q9BYM8 37831767
    755920 7yuk:A (2.11) BS01 dna ? GO:0003677 ... Q8N9N5 37086783
    755921 7yuk:A (2.11) BS02 dna ? GO:0003677 ... Q8N9N5 37086783
    755922 7yul:A (1.82) BS01 dna ? GO:0003677 ... Q5SZJ8 37086783
    755923 7yul:A (1.82) BS02 GOA ? GO:0003677 ... Q5SZJ8 37086783
    755924 7yun:A (2.13) BS01 dna ? GO:0003677 ... Q5SZJ8 37086783
    755925 7yun:A (2.13) BS02 dna ? GO:0003677 ... Q5SZJ8 37086783
    755926 7yun:B (2.13) BS01 dna ? GO:0003677 ... Q5SZJ8 37086783
    755927 7yun:B (2.13) BS02 dna ? GO:0003677 ... Q5SZJ8 37086783
    755928 7yuv:A (3.8) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755929 7yuv:B (3.8) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755930 7yuv:C (3.8) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755931 7yuw:A (3.6) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755932 7yuw:B (3.6) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755933 7yuw:C (3.6) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755934 7yuw:D (3.6) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755935 7yux:A (3.8) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755936 7yux:B (3.8) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755937 7yux:C (3.8) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755938 7yux:D (3.8) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755939 7yux:E (3.8) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 37957149
    755940 7yuy:F (3.5) BS01 BGC 2.4.1.34 GO:0000148 ... P38631 36949198
    755941 7yuz:A (1.878) BS01 peptide 3.6.5.2 GO:0000139 ... P01116 37874670
    755942 7yuz:A (1.878) BS02 GDP 3.6.5.2 GO:0000139 ... P01116 37874670
    755943 7yv1:A (1.454) BS01 peptide 3.6.5.2 GO:0000139 ... P01116 37874670
    755944 7yv1:A (1.454) BS02 GDP 3.6.5.2 GO:0000139 ... P01116 37874670
    755945 7yv4:A (1.58) BS01 JXY 3.4.19.12 GO:0004843 ... P15374 37012254
    755946 7yv8:A (2.94) BS01 ZN 3.4.-.-
    3.4.17.23
    GO:0006508 ... A0A1U7QTA1 37479708
    755947 7yva:A (2.93) BS01 ZN 4.1.2.13 GO:0004332 ... Q9URB4 N/A
    755948 7yva:B (2.93) BS01 ZN 4.1.2.13 GO:0004332 ... Q9URB4 N/A
    755949 7yva:B (2.93) BS02 LPA 4.1.2.13 GO:0004332 ... Q9URB4 N/A
    755950 7yvb:A (3.0) BS01 peptide ? GO:0005272 ... Q4TZI8 37550431
    755951 7yvb:B (3.0) BS01 peptide ? GO:0005272 ... Q4TZI8 37550431
    755952 7yvb:C (3.0) BS01 peptide ? GO:0005272 ... Q4TZI8 37550431
    755953 7yvq:A (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419
    755954 7yvq:A (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    755955 7yvq:A (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    755956 7yvq:B (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419
    755957 7yvq:B (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    755958 7yvq:B (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    755959 7yvq:C (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419
    755960 7yvq:C (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    755961 7yvq:C (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    755962 7yvq:D (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419
    755963 7yvq:D (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    755964 7yvq:D (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    755965 7yvq:E (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419
    755966 7yvq:E (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    755967 7yvq:E (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    755968 7yvq:F (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419
    755969 7yvq:F (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    755970 7yvq:F (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    755971 7yvq:G (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419
    755972 7yvq:G (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    755973 7yvq:G (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    755974 7yvs:A (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    755975 7yvs:A (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    755976 7yvs:A (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    755977 7yvs:B (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    755978 7yvs:B (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    755979 7yvs:B (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    755980 7yvs:C (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    755981 7yvs:C (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    755982 7yvs:C (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    755983 7yvs:D (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    755984 7yvs:D (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    755985 7yvs:D (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    755986 7yvs:E (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    755987 7yvs:E (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    755988 7yvs:E (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    755989 7yvs:F (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    755990 7yvs:F (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    755991 7yvs:F (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    755992 7yvs:G (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    755993 7yvs:G (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    755994 7yvs:G (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    755995 7yvu:A (3.2) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q8R0I0 37479708
    755996 7yvv:A (2.1) BS01 FE 1.13.11.27 GO:0003868 ... A0A7H8HIR4 N/A
    755997 7yvz:A (1.7) BS01 FES ? GO:0010506 ... A7LPG5 36533211
    755998 7yw2:A (2.23) BS01 HQG 2.7.1.160 GO:0000215 ... Q8K3A2 37334830
    755999 7yw2:A (2.23) BS02 GLY 2.7.1.160 GO:0000215 ... Q8K3A2 37334830
    756000 7yw2:A (2.23) BS03 GLY 2.7.1.160 GO:0000215 ... Q8K3A2 37334830

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).