SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 3775 3776 3777 3778 3779 3780 3781 3782 3783 3784 3785 3786 3787 3788 3789 3790 3791 3792 3793 3794 3795 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    756801 7z20:f (2.29) BS01 rna ? GO:0000027 ... P62399 35869078
    756802 7z20:f (2.29) BS02 rna ? GO:0000027 ... P62399 35869078
    756803 7z20:f (2.29) BS03 rna ? GO:0000027 ... P62399 35869078
    756804 7z20:g (2.29) BS01 rna ? GO:0000027 ... P0AG55 35869078
    756805 7z20:h (2.29) BS01 rna ? GO:0002181 ... P0A7R1 35869078
    756806 7z20:j (2.29) BS01 rna ? GO:0002181 ... P0AA10 35869078
    756807 7z20:k (2.29) BS01 rna ? GO:0002181 ... P0ADY3 35869078
    756808 7z20:l (2.29) BS01 rna ? GO:0002181 ... P02413 35869078
    756809 7z20:m (2.29) BS01 rna ? GO:0000027 ... P0ADY7 35869078
    756810 7z20:m (2.29) BS02 rna ? GO:0000027 ... P0ADY7 35869078
    756811 7z20:n (2.29) BS01 rna ? GO:0000027 ... P0AG44 35869078
    756812 7z20:o (2.29) BS01 rna ? GO:0002181 ... P0C018 35869078
    756813 7z20:o (2.29) BS02 rna ? GO:0002181 ... P0C018 35869078
    756814 7z20:p (2.29) BS01 rna ? GO:0000027 ... P0A7K6 35869078
    756815 7z20:q (2.29) BS01 rna ? GO:0000027 ... P0A7L3 35869078
    756816 7z20:r (2.29) BS01 rna ? GO:0002181 ... P0AG48 35869078
    756817 7z20:s (2.29) BS01 rna ? GO:0002181 ... P61175 35869078
    756818 7z20:t (2.29) BS01 rna ? GO:0003735 ... P0ADZ0 35869078
    756819 7z20:u (2.29) BS01 rna ? GO:0000027 ... P60624 35869078
    756820 7z20:w (2.29) BS01 rna ? GO:0000027 ... P68919 35869078
    756821 7z20:y (2.29) BS01 rna ? GO:0000027 ... P0A7L8 35869078
    756822 7z20:y (2.29) BS02 rna ? GO:0000027 ... P0A7L8 35869078
    756823 7z20:y (2.29) BS03 rna ? GO:0000027 ... P0A7L8 35869078
    756824 7z20:z (2.29) BS01 rna ? N/A P13466 35869078
    756825 7z20:z (2.29) BS02 rna ? N/A P13466 35869078
    756826 7z24:A (3.32) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 35858448
    756827 7z25:A (1.35) BS01 CA 3.4.21.4 GO:0004175 ... P00760 35475323
    756828 7z25:A (1.35) BS02 IAF 3.4.21.4 GO:0004175 ... P00760 35475323
    756829 7z26:A (1.9) BS01 rna ? GO:0003723 ... Q9Y5A9 36110386
    756830 7z26:B (1.9) BS01 rna ? GO:0003723 ... Q9Y5A9 36110386
    756831 7z28:A (1.55) BS01 ZN 3.4.11.- GO:0001525 ... Q9NZ08 35833347
    756832 7z28:A (1.55) BS02 I88 3.4.11.- GO:0001525 ... Q9NZ08 35833347
    756833 7z29:A (3.38) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 35858448
    756834 7z2a:A (4.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 36384964
    756835 7z2a:H (4.3) BS01 G2P ? GO:0000226 ... P02554 36384964
    756836 7z2b:A (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 36384964
    756837 7z2b:H (3.3) BS01 G2P ? GO:0000226 ... P02554 36384964
    756838 7z2b:K (3.3) BS01 ANP ? GO:0003777 ... A0A509AB64 36384964
    756839 7z2b:K (3.3) BS02 MG ? GO:0003777 ... A0A509AB64 36384964
    756840 7z2c:A (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 36384964
    756841 7z2c:H (4.1) BS01 G2P ? GO:0000226 ... P02554 36384964
    756842 7z2d:A (3.38) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 35858448
    756843 7z2d:A (3.38) BS02 T27 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 35858448
    756844 7z2d:B (3.38) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003964 ... P03366 35858448
    756845 7z2e:A (3.45) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 35858448
    756846 7z2e:A (3.45) BS02 T27 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 35858448
    756847 7z2g:A (3.65) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 35858448
    756848 7z2g:A (3.65) BS02 2KW 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 35858448
    756849 7z2g:B (3.65) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003964 ... P03366 35858448
    756850 7z2h:A (3.58) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 35858448
    756851 7z2h:A (3.58) BS02 2KW 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 35858448
    756852 7z2h:B (3.58) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003964 ... P03366 35858448
    756853 7z2i:A (1.09) BS01 CA 3.4.21.4 GO:0004175 ... P00760 35475323
    756854 7z2i:A (1.09) BS02 I9O 3.4.21.4 GO:0004175 ... P00760 35475323
    756855 7z2j:A (1.657) BS01 SAH 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.1.-.-
    3.1.13.-
    3.4.21.-
    3.6.4.12
    3.6.4.13
    N/A Q008X6 36265859
    756856 7z2l:A (2.56) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 N/A
    756857 7z2l:A (2.56) BS02 KYN 1.13.11.52 GO:0002376 ... P14902 N/A
    756858 7z2l:B (2.56) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 N/A
    756859 7z2l:B (2.56) BS02 KYN 1.13.11.52 GO:0002376 ... P14902 N/A
    756860 7z2l:B (2.56) BS03 KYN 1.13.11.52 GO:0002376 ... P14902 N/A
    756861 7z2l:B (2.56) BS04 KYN 1.13.11.52 GO:0002376 ... P14902 N/A
    756862 7z2l:C (2.56) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 N/A
    756863 7z2l:D (2.56) BS01 KYN 1.13.11.52 GO:0002376 ... P14902 N/A
    756864 7z2l:D (2.56) BS02 HEM 1.13.11.52 GO:0002376 ... P14902 N/A
    756865 7z2n:A (2.17) BS01 GTP 3.6.5.- GO:0000226 ... P81947 35939994
    756866 7z2n:A (2.17) BS02 CA 3.6.5.- GO:0000226 ... P81947 35939994
    756867 7z2n:B (2.17) BS01 GDP ? GO:0000226 ... Q6B856 35939994
    756868 7z2n:B (2.17) BS02 IAZ ? GO:0000226 ... Q6B856 35939994
    756869 7z2n:C (2.17) BS01 GTP 3.6.5.- GO:0000226 ... P81947 35939994
    756870 7z2n:C (2.17) BS02 CA 3.6.5.- GO:0000226 ... P81947 35939994
    756871 7z2n:D (2.17) BS01 GDP ? GO:0000226 ... Q6B856 35939994
    756872 7z2n:F (2.17) BS01 ACP N/A GO:0036211 ... N/A 35939994
    756873 7z2o:A (1.5) BS01 IAJ 2.4.2.- GO:0003950 ... Q460N3 36598465
    756874 7z2p:A (2.0) BS01 GTP 3.6.5.- GO:0000226 ... P81947 35939994
    756875 7z2p:B (2.0) BS01 GDP ? GO:0000226 ... Q6B856 35939994
    756876 7z2p:B (2.0) BS02 NW6 ? GO:0000226 ... Q6B856 35939994
    756877 7z2p:C (2.0) BS01 GTP 3.6.5.- GO:0000226 ... P81947 35939994
    756878 7z2p:D (2.0) BS01 GDP ? GO:0000226 ... Q6B856 35939994
    756879 7z2p:D (2.0) BS02 NW6 ? GO:0000226 ... Q6B856 35939994
    756880 7z2p:F (2.0) BS01 ACP N/A GO:0036211 ... N/A 35939994
    756881 7z2q:A (2.0) BS01 IAO 2.4.2.- GO:0003950 ... Q460N3 36598465
    756882 7z2s:A (1.72) BS01 IHS 3.1.3.-
    3.6.1.-
    GO:0003924 ... P07102 35683026
    756883 7z2t:A (1.41) BS01 IHS 3.1.3.-
    3.6.1.-
    GO:0003924 ... P07102 35683026
    756884 7z2t:A (1.41) BS02 PO4 3.1.3.-
    3.6.1.-
    GO:0003924 ... P07102 35683026
    756885 7z2u:A (1.9) BS01 FER 3.1.1.73 GO:0016787 ... D7RU28 36569051
    756886 7z2u:A (1.9) BS02 FER 3.1.1.73 GO:0016787 ... D7RU28 36569051
    756887 7z2u:B (1.9) BS01 FER 3.1.1.73 GO:0016787 ... D7RU28 36569051
    756888 7z2u:B (1.9) BS02 FER 3.1.1.73 GO:0016787 ... D7RU28 36569051
    756889 7z2u:B (1.9) BS03 CA 3.1.1.73 GO:0016787 ... D7RU28 36569051
    756890 7z2v:A (1.45) BS01 CA 3.1.1.73 GO:0016787 ... D7RU28 36569051
    756891 7z2v:A (1.45) BS02 CA 3.1.1.73 GO:0016787 ... D7RU28 36569051
    756892 7z2v:B (1.45) BS01 CA 3.1.1.73 GO:0016787 ... D7RU28 36569051
    756893 7z2v:B (1.45) BS02 CA 3.1.1.73 GO:0016787 ... D7RU28 36569051
    756894 7z2w:A (1.42) BS01 IHS 3.1.3.-
    3.6.1.-
    GO:0003924 ... P07102 35683026
    756895 7z2w:A (1.42) BS02 PO4 3.1.3.-
    3.6.1.-
    GO:0003924 ... P07102 35683026
    756896 7z2y:A (1.86) BS01 IHS 3.1.3.-
    3.6.1.-
    GO:0003924 ... P07102 35683026
    756897 7z2y:A (1.86) BS02 IHS 3.1.3.-
    3.6.1.-
    GO:0003924 ... P07102 35683026
    756898 7z2z:A (3.07) BS01 rna 2.7.7.6 GO:0000428 ... P04051 36977686
    756899 7z2z:A (3.07) BS02 dna 2.7.7.6 GO:0000428 ... P04051 36977686
    756900 7z2z:A (3.07) BS03 dna 2.7.7.6 GO:0000428 ... P04051 36977686
    756901 7z2z:A (3.07) BS04 peptide 2.7.7.6 GO:0000428 ... P04051 36977686
    756902 7z2z:A (3.07) BS05 ZN 2.7.7.6 GO:0000428 ... P04051 36977686
    756903 7z2z:A (3.07) BS06 ZN 2.7.7.6 GO:0000428 ... P04051 36977686
    756904 7z2z:A (3.07) BS07 MG 2.7.7.6 GO:0000428 ... P04051 36977686
    756905 7z2z:A (3.07) BS08 4QM 2.7.7.6 GO:0000428 ... P04051 36977686
    756906 7z2z:A (3.07) BS09 MG 2.7.7.6 GO:0000428 ... P04051 36977686
    756907 7z2z:B (3.07) BS01 rna 2.7.7.6 GO:0000428 ... P22276 36977686
    756908 7z2z:B (3.07) BS02 dna 2.7.7.6 GO:0000428 ... P22276 36977686
    756909 7z2z:B (3.07) BS03 peptide 2.7.7.6 GO:0000428 ... P22276 36977686
    756910 7z2z:B (3.07) BS04 ZN 2.7.7.6 GO:0000428 ... P22276 36977686
    756911 7z2z:C (3.07) BS01 peptide ? GO:0000428 ... P07703 36977686
    756912 7z2z:I (3.07) BS01 MG ? GO:0000428 ... Q04307 36977686
    756913 7z2z:I (3.07) BS02 ZN ? GO:0000428 ... Q04307 36977686
    756914 7z2z:I (3.07) BS03 ZN ? GO:0000428 ... Q04307 36977686
    756915 7z2z:J (3.07) BS01 ZN ? GO:0000428 ... P22139 36977686
    756916 7z2z:K (3.07) BS01 peptide ? GO:0000428 ... P28000 36977686
    756917 7z2z:L (3.07) BS01 ZN ? GO:0003677 ... P40422 36977686
    756918 7z2z:O (3.07) BS01 dna ? GO:0000428 ... P32349 36977686
    756919 7z30:A (2.9) BS01 peptide 2.7.7.6 GO:0000428 ... P04051 36977686
    756920 7z30:A (2.9) BS02 ZN 2.7.7.6 GO:0000428 ... P04051 36977686
    756921 7z30:A (2.9) BS03 ZN 2.7.7.6 GO:0000428 ... P04051 36977686
    756922 7z30:A (2.9) BS04 MG 2.7.7.6 GO:0000428 ... P04051 36977686
    756923 7z30:A (2.9) BS05 MG 2.7.7.6 GO:0000428 ... P04051 36977686
    756924 7z30:B (2.9) BS01 peptide 2.7.7.6 GO:0000428 ... P22276 36977686
    756925 7z30:B (2.9) BS02 ZN 2.7.7.6 GO:0000428 ... P22276 36977686
    756926 7z30:C (2.9) BS01 peptide ? GO:0000428 ... P07703 36977686
    756927 7z30:I (2.9) BS01 MG ? GO:0000428 ... Q04307 36977686
    756928 7z30:I (2.9) BS02 ZN ? GO:0000428 ... Q04307 36977686
    756929 7z30:I (2.9) BS03 ZN ? GO:0000428 ... Q04307 36977686
    756930 7z30:J (2.9) BS01 ZN ? GO:0000428 ... P22139 36977686
    756931 7z30:K (2.9) BS01 peptide ? GO:0000428 ... P28000 36977686
    756932 7z30:L (2.9) BS01 ZN ? GO:0003677 ... P40422 36977686
    756933 7z31:A (2.76) BS01 peptide 2.7.7.6 GO:0000428 ... P04051 36977686
    756934 7z31:A (2.76) BS02 ZN 2.7.7.6 GO:0000428 ... P04051 36977686
    756935 7z31:A (2.76) BS03 ZN 2.7.7.6 GO:0000428 ... P04051 36977686
    756936 7z31:A (2.76) BS04 MG 2.7.7.6 GO:0000428 ... P04051 36977686
    756937 7z31:B (2.76) BS01 peptide 2.7.7.6 GO:0000428 ... P22276 36977686
    756938 7z31:B (2.76) BS02 ZN 2.7.7.6 GO:0000428 ... P22276 36977686
    756939 7z31:C (2.76) BS01 peptide ? GO:0000428 ... P07703 36977686
    756940 7z31:I (2.76) BS01 ZN ? GO:0000428 ... Q04307 36977686
    756941 7z31:J (2.76) BS01 ZN ? GO:0000428 ... P22139 36977686
    756942 7z31:K (2.76) BS01 peptide ? GO:0000428 ... P28000 36977686
    756943 7z31:L (2.76) BS01 ZN ? GO:0003677 ... P40422 36977686
    756944 7z34:4 (3.8) BS01 rna 3.-.-.- GO:0000055 ... Q03862 36097293
    756945 7z34:4 (3.8) BS02 rna 3.-.-.- GO:0000055 ... Q03862 36097293
    756946 7z34:A (3.8) BS01 rna ? GO:0002181 ... P0CX45 36097293
    756947 7z34:Aa (3.8) BS01 AGS 3.6.4.10 GO:0005515 ... P32794 36097293
    756948 7z34:Aa (3.8) BS02 AGS 3.6.4.10 GO:0005515 ... P32794 36097293
    756949 7z34:B (3.8) BS01 rna ? GO:0000027 ... P14126 36097293
    756950 7z34:C (3.8) BS01 rna ? GO:0002181 ... P10664 36097293
    756951 7z34:C (3.8) BS02 rna ? GO:0002181 ... P10664 36097293
    756952 7z34:D (3.8) BS01 rna ? GO:0000027 ... P26321 36097293
    756953 7z34:D (3.8) BS02 rna ? GO:0000027 ... P26321 36097293
    756954 7z34:E (3.8) BS01 rna ? GO:0000027 ... Q02326 36097293
    756955 7z34:F (3.8) BS01 rna ? GO:0000463 ... P05737 36097293
    756956 7z34:F (3.8) BS02 rna ? GO:0000463 ... P05737 36097293
    756957 7z34:G (3.8) BS01 rna ? GO:0000470 ... P17076 36097293
    756958 7z34:G (3.8) BS02 rna ? GO:0000470 ... P17076 36097293
    756959 7z34:H (3.8) BS01 rna ? GO:0002181 ... P05738 36097293
    756960 7z34:I (3.8) BS01 rna ? GO:0000055 ... Q08004 36097293
    756961 7z34:J (3.8) BS01 rna ? GO:0000027 ... P0C0W9 36097293
    756962 7z34:J (3.8) BS02 rna ? GO:0000027 ... P0C0W9 36097293
    756963 7z34:K (3.8) BS01 rna ? GO:0002181 ... P02406 36097293
    756964 7z34:L (3.8) BS01 rna ? GO:0002181 ... Q12690 36097293
    756965 7z34:M (3.8) BS01 rna ? GO:0000027 ... P36105 36097293
    756966 7z34:N (3.8) BS01 rna ? GO:0002181 ... P05748 36097293
    756967 7z34:N (3.8) BS02 rna ? GO:0002181 ... P05748 36097293
    756968 7z34:O (3.8) BS01 rna ? GO:0000470 ... P26784 36097293
    756969 7z34:P (3.8) BS01 rna ? GO:0000448 ... P05740 36097293
    756970 7z34:P (3.8) BS02 rna ? GO:0000448 ... P05740 36097293
    756971 7z34:Q (3.8) BS01 rna ? GO:0002181 ... P0CX49 36097293
    756972 7z34:R (3.8) BS01 rna ? GO:0002181 ... P0CX82 36097293
    756973 7z34:S (3.8) BS01 rna ? GO:0002181 ... P0CX23 36097293
    756974 7z34:S (3.8) BS02 rna ? GO:0002181 ... P0CX23 36097293
    756975 7z34:T (3.8) BS01 rna ? GO:0002181 ... Q02753 36097293
    756976 7z34:T (3.8) BS02 rna ? GO:0002181 ... Q02753 36097293
    756977 7z34:U (3.8) BS01 rna ? GO:0002181 ... P05749 36097293
    756978 7z34:V (3.8) BS01 rna ? GO:0002181 ... P0CX41 36097293
    756979 7z34:W (3.8) BS01 rna ? GO:0000027 ... P33201 36097293
    756980 7z34:X (3.8) BS01 rna ? GO:0000027 ... P04456 36097293
    756981 7z34:X (3.8) BS02 rna ? GO:0000027 ... P04456 36097293
    756982 7z34:Y (3.8) BS01 rna ? GO:0002181 ... P05743 36097293
    756983 7z34:Y (3.8) BS02 rna ? GO:0002181 ... P05743 36097293
    756984 7z34:Z (3.8) BS01 rna ? GO:0002181 ... P0C2H6 36097293
    756985 7z34:a (3.8) BS01 rna ? GO:0000027 ... P0CX53 36097293
    756986 7z34:b (3.8) BS01 rna ? GO:0000054 ... Q02892 36097293
    756987 7z34:b (3.8) BS02 MG ? GO:0000054 ... Q02892 36097293
    756988 7z34:c (3.8) BS01 rna ? GO:0002181 ... P14120 36097293
    756989 7z34:d (3.8) BS01 rna ? GO:0002181 ... P0C2H8 36097293
    756990 7z34:e (3.8) BS01 rna ? GO:0002181 ... P38061 36097293
    756991 7z34:f (3.8) BS01 rna ? GO:0000027 ... P05744 36097293
    756992 7z34:g (3.8) BS01 rna ? GO:0002181 ... P87262 36097293
    756993 7z34:h (3.8) BS01 rna ? GO:0000463 ... P0CX84 36097293
    756994 7z34:h (3.8) BS02 rna ? GO:0000463 ... P0CX84 36097293
    756995 7z34:i (3.8) BS01 rna ? GO:0002181 ... P05745 36097293
    756996 7z34:j (3.8) BS01 rna ? GO:0000448 ... P49166 36097293
    756997 7z34:j (3.8) BS02 rna ? GO:0000448 ... P49166 36097293
    756998 7z34:k (3.8) BS01 rna ? GO:0002181 ... P49167 36097293
    756999 7z34:l (3.8) BS01 rna ? GO:0002181 ... P04650 36097293
    757000 7z34:l (3.8) BS02 rna ? GO:0002181 ... P04650 36097293

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).