SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    758201 7ymi:b (3.3) BS17 CL7 ? GO:0009521 ... B0CFM2 38394197
    758202 7ymi:b (3.3) BS18 8CT ? GO:0009521 ... B0CFM2 38394197
    758203 7ymi:b (3.3) BS19 8CT ? GO:0009521 ... B0CFM2 38394197
    758204 7ymi:b (3.3) BS20 CL7 ? GO:0009521 ... B0CFM2 38394197
    758205 7ymi:c (3.3) BS01 peptide ? GO:0005737 ... B0C1V7 38394197
    758206 7ymi:c (3.3) BS02 CL7 ? GO:0005737 ... B0C1V7 38394197
    758207 7ymi:c (3.3) BS03 CL7 ? GO:0005737 ... B0C1V7 38394197
    758208 7ymi:c (3.3) BS04 CL7 ? GO:0005737 ... B0C1V7 38394197
    758209 7ymi:c (3.3) BS05 CL7 ? GO:0005737 ... B0C1V7 38394197
    758210 7ymi:c (3.3) BS06 CL7 ? GO:0005737 ... B0C1V7 38394197
    758211 7ymi:c (3.3) BS07 CL7 ? GO:0005737 ... B0C1V7 38394197
    758212 7ymi:c (3.3) BS08 CL7 ? GO:0005737 ... B0C1V7 38394197
    758213 7ymi:c (3.3) BS09 CL7 ? GO:0005737 ... B0C1V7 38394197
    758214 7ymi:c (3.3) BS10 CL7 ? GO:0005737 ... B0C1V7 38394197
    758215 7ymi:c (3.3) BS11 CL7 ? GO:0005737 ... B0C1V7 38394197
    758216 7ymi:c (3.3) BS12 CL7 ? GO:0005737 ... B0C1V7 38394197
    758217 7ymi:c (3.3) BS13 CL7 ? GO:0005737 ... B0C1V7 38394197
    758218 7ymi:c (3.3) BS14 CL7 ? GO:0005737 ... B0C1V7 38394197
    758219 7ymi:c (3.3) BS15 8CT ? GO:0005737 ... B0C1V7 38394197
    758220 7ymi:c (3.3) BS16 8CT ? GO:0005737 ... B0C1V7 38394197
    758221 7ymi:c (3.3) BS17 CL7 ? GO:0005737 ... B0C1V7 38394197
    758222 7ymi:c (3.3) BS18 8CT ? GO:0005737 ... B0C1V7 38394197
    758223 7ymi:d (3.3) BS01 PHO 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    758224 7ymi:d (3.3) BS02 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    758225 7ymi:d (3.3) BS03 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    758226 7ymi:d (3.3) BS04 FE2 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    758227 7ymi:d (3.3) BS05 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    758228 7ymi:d (3.3) BS06 BCT 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    758229 7ymi:d (3.3) BS07 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    758230 7ymi:d (3.3) BS08 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    758231 7ymi:d (3.3) BS09 8CT 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    758232 7ymi:d (3.3) BS10 PHO 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    758233 7ymi:e (3.3) BS01 HEM ? GO:0005506 ... B0C6T2 38394197
    758234 7ymi:f (3.3) BS01 8CT ? GO:0005737 ... B0C2V2 38394197
    758235 7ymi:f (3.3) BS02 HEM ? GO:0005737 ... B0C2V2 38394197
    758236 7ymi:h (3.3) BS01 CL7 ? GO:0009523 ... B0CDZ2 38394197
    758237 7ymi:h (3.3) BS02 CL7 ? GO:0009523 ... B0CDZ2 38394197
    758238 7ymi:h (3.3) BS03 CL7 ? GO:0009523 ... B0CDZ2 38394197
    758239 7ymi:h (3.3) BS04 CL7 ? GO:0009523 ... B0CDZ2 38394197
    758240 7ymi:i (3.3) BS01 CL7 ? GO:0009523 ... B0C5R5 38394197
    758241 7ymi:i (3.3) BS02 CL7 ? GO:0009523 ... B0C5R5 38394197
    758242 7ymi:k (3.3) BS01 CL7 ? GO:0005737 ... B0C6Z7 38394197
    758243 7ymi:k (3.3) BS02 CL7 ? GO:0005737 ... B0C6Z7 38394197
    758244 7ymi:k (3.3) BS03 8CT ? GO:0005737 ... B0C6Z7 38394197
    758245 7ymi:l (3.3) BS01 peptide ? GO:0005737 ... B0C6T1 38394197
    758246 7ymi:m (3.3) BS01 peptide ? GO:0009523 ... B0CFM0 38394197
    758247 7ymi:z (3.3) BS01 peptide ? GO:0009523 ... B0C0S7 38394197
    758248 7ymj:A (3.35) BS01 JGX ? GO:0004930 ... P35348
    P41145
    37339967
    758249 7ymk:A (2.25) BS01 peptide ? N/A P03372 38045063
    758250 7ymk:B (2.25) BS01 peptide ? N/A P03372 38045063
    758251 7ymk:B (2.25) BS02 IX0 ? N/A P03372 38045063
    758252 7yml:A (2.6) BS01 U10 ? GO:0005886 ... P02948 36792596
    758253 7yml:A (2.6) BS02 BCL ? GO:0005886 ... P02948 36792596
    758254 7yml:A (2.6) BS03 BCL ? GO:0005886 ... P02948 36792596
    758255 7yml:A (2.6) BS04 SPO ? GO:0005886 ... P02948 36792596
    758256 7yml:A (2.6) BS05 BCL ? GO:0005886 ... P02948 36792596
    758257 7yml:A (2.6) BS06 SPO ? GO:0005886 ... P02948 36792596
    758258 7yml:B (2.6) BS01 BCL ? GO:0005886 ... P02950 36792596
    758259 7yml:B (2.6) BS02 BCL ? GO:0005886 ... P02950 36792596
    758260 7yml:B (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    758261 7yml:B (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    758262 7yml:D (2.6) BS01 U10 ? GO:0005886 ... P02948 36792596
    758263 7yml:D (2.6) BS02 SPO ? GO:0005886 ... P02948 36792596
    758264 7yml:D (2.6) BS03 BCL ? GO:0005886 ... P02948 36792596
    758265 7yml:D (2.6) BS04 SPO ? GO:0005886 ... P02948 36792596
    758266 7yml:D (2.6) BS05 SPO ? GO:0005886 ... P02948 36792596
    758267 7yml:D (2.6) BS06 BCL ? GO:0005886 ... P02948 36792596
    758268 7yml:D (2.6) BS07 BCL ? GO:0005886 ... P02948 36792596
    758269 7yml:E (2.6) BS01 BCL ? GO:0005886 ... P02950 36792596
    758270 7yml:E (2.6) BS02 SPO ? GO:0005886 ... P02950 36792596
    758271 7yml:E (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    758272 7yml:E (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    758273 7yml:E (2.6) BS05 BCL ? GO:0005886 ... P02950 36792596
    758274 7yml:F (2.6) BS01 SPO ? GO:0005886 ... P02948 36792596
    758275 7yml:F (2.6) BS02 SPO ? GO:0005886 ... P02948 36792596
    758276 7yml:F (2.6) BS03 BCL ? GO:0005886 ... P02948 36792596
    758277 7yml:F (2.6) BS04 BCL ? GO:0005886 ... P02948 36792596
    758278 7yml:F (2.6) BS05 BCL ? GO:0005886 ... P02948 36792596
    758279 7yml:F (2.6) BS06 BCL ? GO:0005886 ... P02948 36792596
    758280 7yml:F (2.6) BS07 SPO ? GO:0005886 ... P02948 36792596
    758281 7yml:G (2.6) BS01 SPO ? GO:0005886 ... P02950 36792596
    758282 7yml:G (2.6) BS02 BCL ? GO:0005886 ... P02950 36792596
    758283 7yml:G (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    758284 7yml:G (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    758285 7yml:I (2.6) BS01 SPO ? GO:0005886 ... P02948 36792596
    758286 7yml:I (2.6) BS02 BCL ? GO:0005886 ... P02948 36792596
    758287 7yml:I (2.6) BS03 BCL ? GO:0005886 ... P02948 36792596
    758288 7yml:I (2.6) BS04 SPO ? GO:0005886 ... P02948 36792596
    758289 7yml:I (2.6) BS05 SPO ? GO:0005886 ... P02948 36792596
    758290 7yml:I (2.6) BS06 BCL ? GO:0005886 ... P02948 36792596
    758291 7yml:J (2.6) BS01 SPO ? GO:0005886 ... P02950 36792596
    758292 7yml:J (2.6) BS02 BCL ? GO:0005886 ... P02950 36792596
    758293 7yml:J (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    758294 7yml:J (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    758295 7yml:K (2.6) BS01 SPO ? GO:0005886 ... P02948 36792596
    758296 7yml:K (2.6) BS02 SPO ? GO:0005886 ... P02948 36792596
    758297 7yml:K (2.6) BS03 BCL ? GO:0005886 ... P02948 36792596
    758298 7yml:K (2.6) BS04 BCL ? GO:0005886 ... P02948 36792596
    758299 7yml:K (2.6) BS05 BCL ? GO:0005886 ... P02948 36792596
    758300 7yml:K (2.6) BS06 SPO ? GO:0005886 ... P02948 36792596
    758301 7yml:L (2.6) BS01 BCL ? GO:0009772 ... P19057 36792596
    758302 7yml:L (2.6) BS02 BPH ? GO:0009772 ... P19057 36792596
    758303 7yml:L (2.6) BS03 U10 ? GO:0009772 ... P19057 36792596
    758304 7yml:L (2.6) BS04 U10 ? GO:0009772 ... P19057 36792596
    758305 7yml:L (2.6) BS05 BCL ? GO:0009772 ... P19057 36792596
    758306 7yml:L (2.6) BS06 U10 ? GO:0009772 ... P19057 36792596
    758307 7yml:L (2.6) BS07 BCL ? GO:0009772 ... P19057 36792596
    758308 7yml:L (2.6) BS08 BPH ? GO:0009772 ... P19057 36792596
    758309 7yml:L (2.6) BS09 FE ? GO:0009772 ... P19057 36792596
    758310 7yml:L (2.6) BS10 U10 ? GO:0009772 ... P19057 36792596
    758311 7yml:M (2.6) BS01 BPH ? GO:0009772 ... P11847 36792596
    758312 7yml:M (2.6) BS02 BCL ? GO:0009772 ... P11847 36792596
    758313 7yml:M (2.6) BS03 BCL ? GO:0009772 ... P11847 36792596
    758314 7yml:M (2.6) BS04 BCL ? GO:0009772 ... P11847 36792596
    758315 7yml:M (2.6) BS05 BPH ? GO:0009772 ... P11847 36792596
    758316 7yml:M (2.6) BS06 FE ? GO:0009772 ... P11847 36792596
    758317 7yml:M (2.6) BS07 U10 ? GO:0009772 ... P11847 36792596
    758318 7yml:M (2.6) BS08 SPO ? GO:0009772 ... P11847 36792596
    758319 7yml:N (2.6) BS01 SPO ? GO:0005886 ... P02950 36792596
    758320 7yml:N (2.6) BS02 BCL ? GO:0005886 ... P02950 36792596
    758321 7yml:N (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    758322 7yml:N (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    758323 7yml:O (2.6) BS01 SPO ? GO:0005886 ... P02948 36792596
    758324 7yml:O (2.6) BS02 BCL ? GO:0005886 ... P02948 36792596
    758325 7yml:O (2.6) BS03 SPO ? GO:0005886 ... P02948 36792596
    758326 7yml:O (2.6) BS04 SPO ? GO:0005886 ... P02948 36792596
    758327 7yml:O (2.6) BS05 BCL ? GO:0005886 ... P02948 36792596
    758328 7yml:O (2.6) BS06 BCL ? GO:0005886 ... P02948 36792596
    758329 7yml:P (2.6) BS01 BCL ? GO:0005886 ... P02950 36792596
    758330 7yml:P (2.6) BS02 SPO ? GO:0005886 ... P02950 36792596
    758331 7yml:P (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    758332 7yml:P (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    758333 7yml:P (2.6) BS05 BCL ? GO:0005886 ... P02950 36792596
    758334 7yml:Q (2.6) BS01 SPO ? GO:0005886 ... P02948 36792596
    758335 7yml:Q (2.6) BS02 SPO ? GO:0005886 ... P02948 36792596
    758336 7yml:Q (2.6) BS03 BCL ? GO:0005886 ... P02948 36792596
    758337 7yml:Q (2.6) BS04 BCL ? GO:0005886 ... P02948 36792596
    758338 7yml:Q (2.6) BS05 BCL ? GO:0005886 ... P02948 36792596
    758339 7yml:Q (2.6) BS06 SPO ? GO:0005886 ... P02948 36792596
    758340 7yml:R (2.6) BS01 SPO ? GO:0005886 ... P02950 36792596
    758341 7yml:R (2.6) BS02 BCL ? GO:0005886 ... P02950 36792596
    758342 7yml:R (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    758343 7yml:R (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    758344 7yml:R (2.6) BS05 BCL ? GO:0005886 ... P02950 36792596
    758345 7yml:S (2.6) BS01 SPO ? GO:0005886 ... P02948 36792596
    758346 7yml:S (2.6) BS02 BCL ? GO:0005886 ... P02948 36792596
    758347 7yml:S (2.6) BS03 SPO ? GO:0005886 ... P02948 36792596
    758348 7yml:S (2.6) BS04 SPO ? GO:0005886 ... P02948 36792596
    758349 7yml:S (2.6) BS05 BCL ? GO:0005886 ... P02948 36792596
    758350 7yml:S (2.6) BS06 BCL ? GO:0005886 ... P02948 36792596
    758351 7yml:T (2.6) BS01 BCL ? GO:0005886 ... P02950 36792596
    758352 7yml:T (2.6) BS02 SPO ? GO:0005886 ... P02950 36792596
    758353 7yml:T (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    758354 7yml:T (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    758355 7yml:T (2.6) BS05 BCL ? GO:0005886 ... P02950 36792596
    758356 7yml:V (2.6) BS01 SPO ? GO:0005886 ... P02948 36792596
    758357 7yml:V (2.6) BS02 SPO ? GO:0005886 ... P02948 36792596
    758358 7yml:V (2.6) BS03 BCL ? GO:0005886 ... P02948 36792596
    758359 7yml:V (2.6) BS04 BCL ? GO:0005886 ... P02948 36792596
    758360 7yml:V (2.6) BS05 BCL ? GO:0005886 ... P02948 36792596
    758361 7yml:W (2.6) BS01 SPO ? GO:0005886 ... P02950 36792596
    758362 7yml:W (2.6) BS02 BCL ? GO:0005886 ... P02950 36792596
    758363 7yml:W (2.6) BS03 SPO ? GO:0005886 ... P02950 36792596
    758364 7yml:W (2.6) BS04 BCL ? GO:0005886 ... P02950 36792596
    758365 7yml:X (2.6) BS01 U10 ? GO:0005886 ... P26240 36792596
    758366 7yml:X (2.6) BS02 BCL ? GO:0005886 ... P26240 36792596
    758367 7yml:X (2.6) BS03 SPO ? GO:0005886 ... P26240 36792596
    758368 7yml:Y (2.6) BS01 SPO ? GO:0005886 ... P02948 36792596
    758369 7yml:Y (2.6) BS02 BCL ? GO:0005886 ... P02948 36792596
    758370 7yml:Y (2.6) BS03 BCL ? GO:0005886 ... P02948 36792596
    758371 7yml:Z (2.6) BS01 BCL ? GO:0005886 ... P02950 36792596
    758372 7ymm:11 (3.6) BS01 ZEX ? GO:0009521 ... B0C576 38394197
    758373 7ymm:11 (3.6) BS02 ZEX ? GO:0009521 ... B0C576 38394197
    758374 7ymm:11 (3.6) BS03 CL7 ? GO:0009521 ... B0C576 38394197
    758375 7ymm:11 (3.6) BS04 CL7 ? GO:0009521 ... B0C576 38394197
    758376 7ymm:11 (3.6) BS05 CL7 ? GO:0009521 ... B0C576 38394197
    758377 7ymm:11 (3.6) BS06 CL7 ? GO:0009521 ... B0C576 38394197
    758378 7ymm:11 (3.6) BS07 CL7 ? GO:0009521 ... B0C576 38394197
    758379 7ymm:11 (3.6) BS08 CL7 ? GO:0009521 ... B0C576 38394197
    758380 7ymm:11 (3.6) BS09 CL7 ? GO:0009521 ... B0C576 38394197
    758381 7ymm:11 (3.6) BS10 CL7 ? GO:0009521 ... B0C576 38394197
    758382 7ymm:11 (3.6) BS11 CL7 ? GO:0009521 ... B0C576 38394197
    758383 7ymm:11 (3.6) BS12 CL7 ? GO:0009521 ... B0C576 38394197
    758384 7ymm:11 (3.6) BS13 CL7 ? GO:0009521 ... B0C576 38394197
    758385 7ymm:11 (3.6) BS14 CL7 ? GO:0009521 ... B0C576 38394197
    758386 7ymm:11 (3.6) BS15 CL7 ? GO:0009521 ... B0C576 38394197
    758387 7ymm:11 (3.6) BS16 CL7 ? GO:0009521 ... B0C576 38394197
    758388 7ymm:11 (3.6) BS17 CL7 ? GO:0009521 ... B0C576 38394197
    758389 7ymm:11 (3.6) BS18 CL7 ? GO:0009521 ... B0C576 38394197
    758390 7ymm:11 (3.6) BS19 CL7 ? GO:0009521 ... B0C576 38394197
    758391 7ymm:11 (3.6) BS20 CL7 ? GO:0009521 ... B0C576 38394197
    758392 7ymm:11 (3.6) BS21 CL7 ? GO:0009521 ... B0C576 38394197
    758393 7ymm:11 (3.6) BS22 ZEX ? GO:0009521 ... B0C576 38394197
    758394 7ymm:11 (3.6) BS23 ZEX ? GO:0009521 ... B0C576 38394197
    758395 7ymm:12 (3.6) BS01 CL7 ? GO:0009521 ... B0C3E5 38394197
    758396 7ymm:12 (3.6) BS02 CL7 ? GO:0009521 ... B0C3E5 38394197
    758397 7ymm:12 (3.6) BS03 CL7 ? GO:0009521 ... B0C3E5 38394197
    758398 7ymm:12 (3.6) BS04 CL7 ? GO:0009521 ... B0C3E5 38394197
    758399 7ymm:12 (3.6) BS05 CL7 ? GO:0009521 ... B0C3E5 38394197
    758400 7ymm:12 (3.6) BS06 CL7 ? GO:0009521 ... B0C3E5 38394197

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).