SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    760401 7zo1:B (2.4) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 36306733
    760402 7zo1:B (2.4) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 36306733
    760403 7zo2:A (1.49) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    760404 7zo2:A (1.49) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    760405 7zo2:A (1.49) BS03 DQM 3.5.2.6 GO:0008270 ... P52700 36924941
    760406 7zo3:A (1.43) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    760407 7zo3:A (1.43) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    760408 7zo3:A (1.43) BS03 JNQ 3.5.2.6 GO:0008270 ... P52700 36924941
    760409 7zo4:A (1.43) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    760410 7zo4:A (1.43) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    760411 7zo4:A (1.43) BS03 JOI 3.5.2.6 GO:0008270 ... P52700 36924941
    760412 7zo5:A (1.43) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    760413 7zo5:A (1.43) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    760414 7zo5:A (1.43) BS03 JO9 3.5.2.6 GO:0008270 ... P52700 36924941
    760415 7zo6:A (1.61) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    760416 7zo6:A (1.61) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    760417 7zo6:A (1.61) BS03 JNX 3.5.2.6 GO:0008270 ... P52700 36924941
    760418 7zo7:A (1.63) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    760419 7zo7:A (1.63) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    760420 7zo7:A (1.63) BS03 JOU 3.5.2.6 GO:0008270 ... P52700 36924941
    760421 7zo9:A (3.5) BS01 ADP 7.5.2.3 GO:0005515 ... Q2YQ73 36456825
    760422 7zo9:A (3.5) BS02 VO4 7.5.2.3 GO:0005515 ... Q2YQ73 36456825
    760423 7zo9:B (3.5) BS01 ADP 7.5.2.3 GO:0005515 ... Q2YQ73 36456825
    760424 7zo9:B (3.5) BS02 VO4 7.5.2.3 GO:0005515 ... Q2YQ73 36456825
    760425 7zoa:A (4.0) BS01 BGC 7.5.2.3 GO:0005515 ... Q2YQ73 36456825
    760426 7zoa:B (4.0) BS01 BGC 7.5.2.3 GO:0005515 ... Q2YQ73 36456825
    760427 7zob:A (1.2) BS01 ZN N/A GO:0003824 ... N/A 36735785
    760428 7zob:B (1.2) BS01 ZN N/A GO:0003824 ... N/A 36735785
    760429 7zob:C (1.2) BS01 ZN N/A GO:0003824 ... N/A 36735785
    760430 7zob:D (1.2) BS01 ZN N/A GO:0003824 ... N/A 36735785
    760431 7zob:E (1.2) BS01 ZN N/A GO:0003824 ... N/A 36735785
    760432 7zob:F (1.2) BS01 ZN N/A GO:0003824 ... N/A 36735785
    760433 7zob:G (1.2) BS01 ZN N/A GO:0003824 ... N/A 36735785
    760434 7zob:H (1.2) BS01 ZN N/A GO:0003824 ... N/A 36735785
    760435 7zoc:A (1.91) BS01 ZN 3.4.24.3 GO:0004222 ... Q46085 N/A
    760436 7zoc:A (1.91) BS02 CA 3.4.24.3 GO:0004222 ... Q46085 N/A
    760437 7zoc:A (1.91) BS03 T8E 3.4.24.3 GO:0004222 ... Q46085 N/A
    760438 7zod:0 (2.56) BS01 rna ? GO:0000027 ... P0A7M2 35869078
    760439 7zod:1 (2.56) BS01 rna ? GO:0000027 ... P0A7M6 35869078
    760440 7zod:2 (2.56) BS01 rna ? GO:0000027 ... P0AG51 35869078
    760441 7zod:3 (2.56) BS01 rna ? GO:0000027 ... P0A7N4 35869078
    760442 7zod:4 (2.56) BS01 rna ? GO:0000027 ... P0A7N9 35869078
    760443 7zod:6 (2.56) BS01 rna ? GO:0002181 ... P0A7P5 35869078
    760444 7zod:7 (2.56) BS01 rna ? GO:0002181 ... P0A7Q1 35869078
    760445 7zod:8 (2.56) BS01 rna ? GO:0003735 ... A0A2X1PTA3 35869078
    760446 7zod:c (2.56) BS01 rna ? GO:0000027 ... P60422 35869078
    760447 7zod:d (2.56) BS01 rna ? GO:0000027 ... P60438 35869078
    760448 7zod:e (2.56) BS01 rna ? GO:0001070 ... P60723 35869078
    760449 7zod:f (2.56) BS01 rna ? GO:0000027 ... P62399 35869078
    760450 7zod:f (2.56) BS02 rna ? GO:0000027 ... P62399 35869078
    760451 7zod:g (2.56) BS01 rna ? GO:0000027 ... P0AG55 35869078
    760452 7zod:h (2.56) BS01 rna ? GO:0002181 ... P0A7R1 35869078
    760453 7zod:j (2.56) BS01 rna ? GO:0002181 ... P0AA10 35869078
    760454 7zod:k (2.56) BS01 rna ? GO:0002181 ... P0ADY3 35869078
    760455 7zod:l (2.56) BS01 rna ? GO:0002181 ... P02413 35869078
    760456 7zod:m (2.56) BS01 rna ? GO:0000027 ... P0ADY7 35869078
    760457 7zod:n (2.56) BS01 rna ? GO:0000027 ... P0AG44 35869078
    760458 7zod:o (2.56) BS01 rna ? GO:0002181 ... P0C018 35869078
    760459 7zod:o (2.56) BS02 rna ? GO:0002181 ... P0C018 35869078
    760460 7zod:p (2.56) BS01 rna ? GO:0000027 ... P0A7K6 35869078
    760461 7zod:q (2.56) BS01 rna ? GO:0000027 ... P0A7L3 35869078
    760462 7zod:r (2.56) BS01 rna ? GO:0002181 ... P0AG48 35869078
    760463 7zod:s (2.56) BS01 rna ? GO:0002181 ... P61175 35869078
    760464 7zod:t (2.56) BS01 rna ? GO:0003735 ... P0ADZ0 35869078
    760465 7zod:u (2.56) BS01 rna ? GO:0000027 ... P60624 35869078
    760466 7zod:w (2.56) BS01 rna ? GO:0000027 ... P68919 35869078
    760467 7zod:y (2.56) BS01 rna ? GO:0000027 ... P0A7L8 35869078
    760468 7zod:y (2.56) BS02 rna ? GO:0000027 ... P0A7L8 35869078
    760469 7zoe:A (1.5) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    760470 7zoe:A (1.5) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    760471 7zof:A (1.74) BS01 JLL ? GO:0005576 ... P22629 N/A
    760472 7zof:B (1.74) BS01 JLL ? GO:0005576 ... P22629 N/A
    760473 7zof:C (1.74) BS01 JLL ? GO:0005576 ... P22629 N/A
    760474 7zof:D (1.74) BS01 JLL ? GO:0005576 ... P22629 N/A
    760475 7zog:A (1.8) BS01 JE5 6.1.1.6 GO:0000049 ... Q5CR27 36037410
    760476 7zog:A (1.8) BS02 LYS 6.1.1.6 GO:0000049 ... Q5CR27 36037410
    760477 7zog:B (1.8) BS01 JE5 6.1.1.6 GO:0000049 ... Q5CR27 36037410
    760478 7zog:B (1.8) BS02 LYS 6.1.1.6 GO:0000049 ... Q5CR27 36037410
    760479 7zog:C (1.8) BS01 JE5 6.1.1.6 GO:0000049 ... Q5CR27 36037410
    760480 7zog:C (1.8) BS02 LYS 6.1.1.6 GO:0000049 ... Q5CR27 36037410
    760481 7zog:D (1.8) BS01 JE5 6.1.1.6 GO:0000049 ... Q5CR27 36037410
    760482 7zog:D (1.8) BS02 LYS 6.1.1.6 GO:0000049 ... Q5CR27 36037410
    760483 7zok:A (-1.00) BS01 ZN ? N/A Q1D2V2 38809974
    760484 7zol:B (3.03) BS01 rna ? GO:0051607 ... A0A975GRY4 36471056
    760485 7zol:B (3.03) BS02 ZN ? GO:0051607 ... A0A975GRY4 36471056
    760486 7zol:B (3.03) BS03 ZN ? GO:0051607 ... A0A975GRY4 36471056
    760487 7zol:B (3.03) BS04 ZN ? GO:0051607 ... A0A975GRY4 36471056
    760488 7zon:A (1.77) BS01 BGC ? N/A A0A979GQH9 38653764
    760489 7zon:A (1.77) BS02 BGC ? N/A A0A979GQH9 38653764
    760490 7zon:A (1.77) BS03 BGC ? N/A A0A979GQH9 38653764
    760491 7zon:B (1.77) BS01 BGC ? N/A A0A979GQH9 38653764
    760492 7zoo:A (1.84) BS01 BGC ? N/A A0A979GQH9 38653764
    760493 7zoo:A (1.84) BS02 BGC ? N/A A0A979GQH9 38653764
    760494 7zoo:B (1.84) BS01 BGC ? N/A A0A979GQH9 38653764
    760495 7zop:A (1.68) BS01 BGC ? N/A A0A979GQH9 38653764
    760496 7zoq:B (3.2) BS01 rna ? GO:0051607 ... A0A975GRY4 36471056
    760497 7zoq:B (3.2) BS02 ZN ? GO:0051607 ... A0A975GRY4 36471056
    760498 7zoq:B (3.2) BS03 ZN ? GO:0051607 ... A0A975GRY4 36471056
    760499 7zoq:B (3.2) BS04 ZN ? GO:0051607 ... A0A975GRY4 36471056
    760500 7zos:A (1.9) BS01 HEM ? GO:0019825 ... V5QR23 36009334
    760501 7zos:A (1.9) BS02 FC6 ? GO:0019825 ... V5QR23 36009334
    760502 7zou:A (1.58) BS01 CL N/A GO:0005216 ... N/A 36309497
    760503 7zov:A (1.7) BS01 CL N/A GO:0005216 ... N/A 36309497
    760504 7zoy:A (1.91) BS01 CL N/A GO:0005216 ... N/A 36309497
    760505 7zoy:A (1.91) BS02 SO4 N/A GO:0005216 ... N/A 36309497
    760506 7zp2:A (2.292) BS01 EJG 2.1.3.2 GO:0004070 ... A0A5K1K910 36195578
    760507 7zp2:B (2.292) BS01 EJG 2.1.3.2 GO:0004070 ... A0A5K1K910 36195578
    760508 7zp7:A (1.7) BS01 JRP 3.8.2.2 GO:0005509 ... Q7SIG4 36130727
    760509 7zp7:B (1.7) BS01 JRP 3.8.2.2 GO:0005509 ... Q7SIG4 36130727
    760510 7zp8:0 (2.2) BS01 rna ? GO:0000027 ... P0A7M2 35869078
    760511 7zp8:1 (2.2) BS01 rna ? GO:0000027 ... P0A7M6 35869078
    760512 7zp8:2 (2.2) BS01 rna ? GO:0000027 ... P0AG51 35869078
    760513 7zp8:3 (2.2) BS01 rna ? GO:0000027 ... P0A7N4 35869078
    760514 7zp8:4 (2.2) BS01 rna ? GO:0000027 ... P0A7N9 35869078
    760515 7zp8:6 (2.2) BS01 rna ? GO:0002181 ... P0A7P5 35869078
    760516 7zp8:7 (2.2) BS01 rna ? GO:0002181 ... P0A7Q1 35869078
    760517 7zp8:8 (2.2) BS01 rna ? GO:0003735 ... A0A2X1PTA3 35869078
    760518 7zp8:c (2.2) BS01 rna ? GO:0000027 ... P60422 35869078
    760519 7zp8:d (2.2) BS01 rna ? GO:0000027 ... P60438 35869078
    760520 7zp8:e (2.2) BS01 rna ? GO:0001070 ... P60723 35869078
    760521 7zp8:f (2.2) BS01 rna ? GO:0000027 ... P62399 35869078
    760522 7zp8:f (2.2) BS02 rna ? GO:0000027 ... P62399 35869078
    760523 7zp8:f (2.2) BS03 rna ? GO:0000027 ... P62399 35869078
    760524 7zp8:g (2.2) BS01 rna ? GO:0000027 ... P0AG55 35869078
    760525 7zp8:h (2.2) BS01 rna ? GO:0002181 ... P0A7R1 35869078
    760526 7zp8:j (2.2) BS01 rna ? GO:0002181 ... P0AA10 35869078
    760527 7zp8:k (2.2) BS01 rna ? GO:0002181 ... P0ADY3 35869078
    760528 7zp8:l (2.2) BS01 rna ? GO:0002181 ... P02413 35869078
    760529 7zp8:m (2.2) BS01 rna ? GO:0000027 ... P0ADY7 35869078
    760530 7zp8:m (2.2) BS02 rna ? GO:0000027 ... P0ADY7 35869078
    760531 7zp8:n (2.2) BS01 rna ? GO:0000027 ... P0AG44 35869078
    760532 7zp8:o (2.2) BS01 rna ? GO:0002181 ... P0C018 35869078
    760533 7zp8:o (2.2) BS02 rna ? GO:0002181 ... P0C018 35869078
    760534 7zp8:p (2.2) BS01 rna ? GO:0000027 ... P0A7K6 35869078
    760535 7zp8:q (2.2) BS01 rna ? GO:0000027 ... P0A7L3 35869078
    760536 7zp8:r (2.2) BS01 rna ? GO:0002181 ... P0AG48 35869078
    760537 7zp8:s (2.2) BS01 rna ? GO:0002181 ... P61175 35869078
    760538 7zp8:t (2.2) BS01 rna ? GO:0000027 ... P0ADZ0 35869078
    760539 7zp8:u (2.2) BS01 rna ? GO:0000027 ... P60624 35869078
    760540 7zp8:w (2.2) BS01 rna ? GO:0000027 ... P68919 35869078
    760541 7zp8:w (2.2) BS02 rna ? GO:0000027 ... P68919 35869078
    760542 7zp8:y (2.2) BS01 rna ? GO:0000027 ... P0A7L8 35869078
    760543 7zp8:y (2.2) BS02 rna ? GO:0000027 ... P0A7L8 35869078
    760544 7zp8:y (2.2) BS03 rna ? GO:0000027 ... P0A7L8 35869078
    760545 7zp8:z (2.2) BS01 rna ? N/A P13466 35869078
    760546 7zp8:z (2.2) BS02 rna ? N/A P13466 35869078
    760547 7zp9:A (2.82) BS01 ADP ? GO:0005524 ... O87952 N/A
    760548 7zp9:B (2.82) BS01 ADP ? GO:0005524 ... O87952 N/A
    760549 7zp9:D (2.82) BS01 ADP ? GO:0005524 ... O87952 N/A
    760550 7zp9:D (2.82) BS02 MG ? GO:0005524 ... O87952 N/A
    760551 7zp9:E (2.82) BS01 ADP ? GO:0005524 ... O87952 N/A
    760552 7zp9:F (2.82) BS01 ADP ? GO:0005524 ... O87952 N/A
    760553 7zp9:H (2.82) BS01 ADP ? GO:0005524 ... O87952 N/A
    760554 7zp9:J (2.82) BS01 ADP ? GO:0005524 ... O87952 N/A
    760555 7zp9:L (2.82) BS01 ADP ? GO:0005524 ... O87952 N/A
    760556 7zpa:A (3.9) BS01 dna ? GO:0003700 ... Q5WKW3 37378428
    760557 7zpa:A (3.9) BS02 dna ? GO:0003700 ... Q5WKW3 37378428
    760558 7zpa:B (3.9) BS01 dna ? GO:0003700 ... Q5WKW3 37378428
    760559 7zpa:B (3.9) BS02 dna ? GO:0003700 ... Q5WKW3 37378428
    760560 7zpb:A (2.31) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 37250172
    760561 7zpb:A (2.31) BS02 FUC 3.1.1.8 GO:0001540 ... P06276 37250172
    760562 7zpb:A (2.31) BS03 JS0 3.1.1.8 GO:0001540 ... P06276 37250172
    760563 7zpc:A (1.4) BS01 JLC 2.7.11.22 GO:0000082 ... P24941 35943172
    760564 7zpd:A (1.4) BS01 JVC 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004252 ... Q32ZE1 38809037
    760565 7zpd:B (1.4) BS01 JVC 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003723 ... Q32ZE1 38809037
    760566 7zpf:A (2.54) BS01 ZN ? GO:0046872 ... Q2VL32 37973928
    760567 7zpf:B (2.54) BS01 ZN ? GO:0046872 ... Q2VL32 37973928
    760568 7zpf:C (2.54) BS01 ZN ? GO:0046872 ... Q2VL32 37973928
    760569 7zpf:D (2.54) BS01 ZN ? GO:0046872 ... Q2VL32 37973928
    760570 7zpg:A (1.16) BS01 JQX 3.1.1.23 GO:0004622 ... Q99685 36084029
    760571 7zpi:A (5.91) BS01 rna 3.1.26.3 GO:0000122 ... Q8R418 36332606
    760572 7zpj:A (3.81) BS01 rna 3.1.26.3 GO:0000122 ... Q8R418 36332606
    760573 7zpk:A (3.81) BS01 rna 3.1.26.3 GO:0000122 ... Q8R418 36332606
    760574 7zpk:C (3.81) BS01 rna ? GO:0003723 ... P97473 36332606
    760575 7zpl:A (3.12) BS01 rna 3.1.-.- GO:0003723 ... M9TI86 36596301
    760576 7zpl:B (3.12) BS01 rna 2.7.7.48 GO:0000166 ... M9TLW3 36596301
    760577 7zpl:B (3.12) BS02 MG 2.7.7.48 GO:0000166 ... M9TLW3 36596301
    760578 7zpl:D (3.12) BS01 rna 3.1.-.- GO:0003723 ... M9TI86 36596301
    760579 7zpl:E (3.12) BS01 rna 2.7.7.48 GO:0000166 ... M9TLW3 36596301
    760580 7zpo:A (3.24) BS01 ADP ? GO:0005524 ... O87952 N/A
    760581 7zpo:B (3.24) BS01 ADP ? GO:0005524 ... O87952 N/A
    760582 7zpo:D (3.24) BS01 ADP ? GO:0005524 ... O87952 N/A
    760583 7zpo:E (3.24) BS01 ADP ? GO:0005524 ... O87952 N/A
    760584 7zpo:F (3.24) BS01 ADP ? GO:0005524 ... O87952 N/A
    760585 7zpo:H (3.24) BS01 ADP ? GO:0005524 ... O87952 N/A
    760586 7zpo:J (3.24) BS01 ADP ? GO:0005524 ... O87952 N/A
    760587 7zpo:L (3.24) BS01 ADP ? GO:0005524 ... O87952 N/A
    760588 7zpp:A (4.5) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.4
    3.4.23.-
    3.6.1.23
    GO:0003676 ... P35956 28059770
    760589 7zpp:A (4.5) BS02 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.4
    3.4.23.-
    3.6.1.23
    GO:0003676 ... P35956 28059770
    760590 7zpp:A (4.5) BS03 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.4
    3.4.23.-
    3.6.1.23
    GO:0003676 ... P35956 28059770
    760591 7zpp:I (4.5) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.4
    3.4.23.-
    3.6.1.23
    GO:0003676 ... P35956 28059770
    760592 7zpp:I (4.5) BS02 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.4
    3.4.23.-
    3.6.1.23
    GO:0003676 ... P35956 28059770
    760593 7zpp:I (4.5) BS03 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.4
    3.4.23.-
    3.6.1.23
    GO:0003676 ... P35956 28059770
    760594 7zpq:AA (3.47) BS01 rna ? GO:0003735 ... P32905 36801861
    760595 7zpq:AB (3.47) BS01 rna ? GO:0000462 ... P33442 36801861
    760596 7zpq:AC (3.47) BS01 rna ? GO:0003723 ... P25443 36801861
    760597 7zpq:AD (3.47) BS01 rna ? GO:0000054 ... P05750 36801861
    760598 7zpq:AE (3.47) BS01 rna ? GO:0002181 ... P0CX35 36801861
    760599 7zpq:AF (3.47) BS01 rna ? GO:0000028 ... P26783 36801861
    760600 7zpq:AG (3.47) BS01 rna ? GO:0000462 ... P0CX37 36801861

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).