SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    760401 7yz3:B (1.8) BS01 GDP ? GO:0000226 ... Q6B856 36807348
    760402 7yz5:A (2.11) BS01 GTP 3.6.5.- GO:0000226 ... P81947 36807348
    760403 7yz5:A (2.11) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    760404 7yz5:B (2.11) BS01 GDP ? GO:0000226 ... Q6B856 36807348
    760405 7yz6:A (2.1) BS01 GTP 3.6.5.- GO:0000226 ... P81947 36807348
    760406 7yz6:A (2.1) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    760407 7yz6:A (2.1) BS03 IBL 3.6.5.- GO:0000226 ... P81947 36807348
    760408 7yz6:B (2.1) BS01 IBL ? GO:0000226 ... Q6B856 36807348
    760409 7yz6:B (2.1) BS02 GTP ? GO:0000226 ... Q6B856 36807348
    760410 7yz7:A (0.98) BS01 dna ? GO:0003700 ... Q9I9E1 36435807
    760411 7yz7:A (0.98) BS02 dna ? GO:0003700 ... Q9I9E1 36435807
    760412 7yz9:A (1.97) BS01 MN 4.6.1.1 GO:0009190 ... P9WQ35 35980026
    760413 7yz9:A (1.97) BS02 MN 4.6.1.1 GO:0009190 ... P9WQ35 35980026
    760414 7yz9:A (1.97) BS03 ONM 4.6.1.1 GO:0009190 ... P9WQ35 35980026
    760415 7yza:A (1.18) BS01 dna ? GO:0003700 ... Q9I9E1 36435807
    760416 7yza:A (1.18) BS02 dna ? GO:0003700 ... Q9I9E1 36435807
    760417 7yzb:A (1.47) BS01 dna ? GO:0003700 ... O75593 36435807
    760418 7yzb:A (1.47) BS02 dna ? GO:0003700 ... O75593 36435807
    760419 7yzc:A (2.17) BS01 dna ? GO:0003700 ... Q9I9E1 36435807
    760420 7yzc:A (2.17) BS02 dna ? GO:0003700 ... Q9I9E1 36435807
    760421 7yzd:A (2.13) BS01 dna ? GO:0003700 ... Q9I9E1 36435807
    760422 7yzd:A (2.13) BS02 dna ? GO:0003700 ... Q9I9E1 36435807
    760423 7yze:A (1.99) BS01 dna ? GO:0003700 ... Q9Y261 36435807
    760424 7yze:A (1.99) BS02 dna ? GO:0003700 ... Q9Y261 36435807
    760425 7yzf:C (2.18) BS01 dna ? GO:0003700 ... Q9Y261 36435807
    760426 7yzf:C (2.18) BS02 dna ? GO:0003700 ... Q9Y261 36435807
    760427 7yzg:A (2.82) BS01 dna ? GO:0003700 ... P70056 36435807
    760428 7yzg:A (2.82) BS02 dna ? GO:0003700 ... P70056 36435807
    760429 7yzh:AAA (1.79) BS01 ZN 4.2.1.1 GO:0004089 ... A0A3Q0KSG2 35635137
    760430 7yzh:AAA (1.79) BS02 HFF 4.2.1.1 GO:0004089 ... A0A3Q0KSG2 35635137
    760431 7yzh:BBB (1.79) BS01 ZN 4.2.1.1 GO:0004089 ... A0A3Q0KSG2 35635137
    760432 7yzh:BBB (1.79) BS02 HFF 4.2.1.1 GO:0004089 ... A0A3Q0KSG2 35635137
    760433 7yzi:A (3.83) BS01 ONM 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    760434 7yzi:A (3.83) BS02 MN 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    760435 7yzi:A (3.83) BS03 MN 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    760436 7yzi:A (3.83) BS04 ONM 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    760437 7yzi:B (3.83) BS01 ONM 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    760438 7yzi:B (3.83) BS02 ONM 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    760439 7yzi:B (3.83) BS03 MN 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    760440 7yzi:B (3.83) BS04 MN 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    760441 7yzj:H (2.6) BS01 peptide N/A N/A N/A N/A
    760442 7yzj:L (2.6) BS01 peptide N/A N/A N/A N/A
    760443 7yzk:A (3.57) BS01 ONM 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    760444 7yzk:A (3.57) BS02 MN 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    760445 7yzk:A (3.57) BS03 MN 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    760446 7yzk:A (3.57) BS04 ONM 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    760447 7yzk:B (3.57) BS01 ONM 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    760448 7yzk:B (3.57) BS02 ONM 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    760449 7yzk:B (3.57) BS03 MN 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    760450 7yzk:B (3.57) BS04 MN 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    760451 7yzm:A (1.82) BS01 BJ8 ? GO:0016836 ... Q3AET9 35905315
    760452 7yzm:A (1.82) BS02 BU3 ? GO:0016836 ... Q3AET9 35905315
    760453 7yzm:A (1.82) BS03 BU3 ? GO:0016836 ... Q3AET9 35905315
    760454 7yzm:B (1.82) BS01 BJ8 ? GO:0016836 ... Q3AET9 35905315
    760455 7yzm:C (1.82) BS01 BJ8 ? GO:0016836 ... Q3AET9 35905315
    760456 7yzm:C (1.82) BS02 BU3 ? GO:0016836 ... Q3AET9 35905315
    760457 7yzm:C (1.82) BS03 BU3 ? GO:0016836 ... Q3AET9 35905315
    760458 7yzm:D (1.82) BS01 BJ8 ? GO:0016836 ... Q3AET9 35905315
    760459 7yzm:D (1.82) BS02 BU3 ? GO:0016836 ... Q3AET9 35905315
    760460 7yzm:D (1.82) BS03 BU3 ? GO:0016836 ... Q3AET9 35905315
    760461 7yzm:E (1.82) BS01 SF4 ? N/A Q3AET8 35905315
    760462 7yzm:E (1.82) BS02 ANP ? N/A Q3AET8 35905315
    760463 7yzm:E (1.82) BS03 BU3 ? N/A Q3AET8 35905315
    760464 7yzm:F (1.82) BS01 SF4 ? N/A Q3AET8 35905315
    760465 7yzm:F (1.82) BS02 ANP ? N/A Q3AET8 35905315
    760466 7yzm:F (1.82) BS03 BU3 ? N/A Q3AET8 35905315
    760467 7yzm:F (1.82) BS04 BU3 ? N/A Q3AET8 35905315
    760468 7yzm:F (1.82) BS05 BU3 ? N/A Q3AET8 35905315
    760469 7yzm:G (1.82) BS01 ANP ? N/A Q3AET8 35905315
    760470 7yzm:G (1.82) BS02 BU3 ? N/A Q3AET8 35905315
    760471 7yzm:G (1.82) BS03 BU3 ? N/A Q3AET8 35905315
    760472 7yzm:G (1.82) BS04 BU3 ? N/A Q3AET8 35905315
    760473 7yzm:G (1.82) BS05 SF4 ? N/A Q3AET8 35905315
    760474 7yzm:H (1.82) BS01 BU3 ? N/A Q3AET8 35905315
    760475 7yzm:H (1.82) BS02 SF4 ? N/A Q3AET8 35905315
    760476 7yzm:H (1.82) BS03 ANP ? N/A Q3AET8 35905315
    760477 7yzm:H (1.82) BS04 BU3 ? N/A Q3AET8 35905315
    760478 7yzm:H (1.82) BS05 BU3 ? N/A Q3AET8 35905315
    760479 7yzn:A (1.7) BS01 MG ? GO:0003743 ... Q9UZK7 35694843
    760480 7yzn:A (1.7) BS02 GTP ? GO:0003743 ... Q9UZK7 35694843
    760481 7yzo:A (3.4) BS01 dna ? GO:0000014 ... P0AG76 35987200
    760482 7yzo:A (3.4) BS02 dna ? GO:0000014 ... P0AG76 35987200
    760483 7yzo:A (3.4) BS03 MN ? GO:0000014 ... P0AG76 35987200
    760484 7yzo:A (3.4) BS04 MN ? GO:0000014 ... P0AG76 35987200
    760485 7yzo:B (3.4) BS01 MN ? GO:0000014 ... P0AG76 35987200
    760486 7yzo:B (3.4) BS02 MN ? GO:0000014 ... P0AG76 35987200
    760487 7yzo:C (3.4) BS01 dna ? GO:0000014 ... P13458 35987200
    760488 7yzo:C (3.4) BS02 dna ? GO:0000014 ... P13458 35987200
    760489 7yzo:C (3.4) BS03 ADP ? GO:0000014 ... P13458 35987200
    760490 7yzo:C (3.4) BS04 MG ? GO:0000014 ... P13458 35987200
    760491 7yzo:C (3.4) BS05 ADP ? GO:0000014 ... P13458 35987200
    760492 7yzo:D (3.4) BS01 dna ? GO:0000014 ... P13458 35987200
    760493 7yzo:D (3.4) BS02 dna ? GO:0000014 ... P13458 35987200
    760494 7yzo:D (3.4) BS03 ADP ? GO:0000014 ... P13458 35987200
    760495 7yzo:D (3.4) BS04 ADP ? GO:0000014 ... P13458 35987200
    760496 7yzo:D (3.4) BS05 MG ? GO:0000014 ... P13458 35987200
    760497 7yzp:A (4.0) BS01 dna ? GO:0000014 ... P0AG76 35987200
    760498 7yzp:A (4.0) BS02 MN ? GO:0000014 ... P0AG76 35987200
    760499 7yzp:A (4.0) BS03 MN ? GO:0000014 ... P0AG76 35987200
    760500 7yzp:B (4.0) BS01 MN ? GO:0000014 ... P0AG76 35987200
    760501 7yzp:B (4.0) BS02 MN ? GO:0000014 ... P0AG76 35987200
    760502 7yzp:C (4.0) BS01 dna ? GO:0000014 ... P13458 35987200
    760503 7yzp:C (4.0) BS02 ADP ? GO:0000014 ... P13458 35987200
    760504 7yzp:C (4.0) BS03 MG ? GO:0000014 ... P13458 35987200
    760505 7yzp:C (4.0) BS04 ADP ? GO:0000014 ... P13458 35987200
    760506 7yzp:D (4.0) BS01 dna ? GO:0000014 ... P13458 35987200
    760507 7yzp:D (4.0) BS02 ADP ? GO:0000014 ... P13458 35987200
    760508 7yzp:D (4.0) BS03 ADP ? GO:0000014 ... P13458 35987200
    760509 7yzq:A (1.96) BS01 BJ8 ? GO:0016836 ... Q3AET9 35905315
    760510 7yzq:B (1.96) BS01 BJ8 ? GO:0016836 ... Q3AET9 35905315
    760511 7yzq:B (1.96) BS02 BU3 ? GO:0016836 ... Q3AET9 35905315
    760512 7yzq:C (1.96) BS01 BJ8 ? GO:0016836 ... Q3AET9 35905315
    760513 7yzq:D (1.96) BS01 BJ8 ? GO:0016836 ... Q3AET9 35905315
    760514 7yzq:D (1.96) BS02 BU3 ? GO:0016836 ... Q3AET9 35905315
    760515 7yzq:E (1.96) BS01 ADP ? N/A Q3AET8 35905315
    760516 7yzq:E (1.96) BS02 ALF ? N/A Q3AET8 35905315
    760517 7yzq:E (1.96) BS03 SF4 ? N/A Q3AET8 35905315
    760518 7yzq:F (1.96) BS01 SF4 ? N/A Q3AET8 35905315
    760519 7yzq:F (1.96) BS02 ADP ? N/A Q3AET8 35905315
    760520 7yzq:F (1.96) BS03 ALF ? N/A Q3AET8 35905315
    760521 7yzq:G (1.96) BS01 ADP ? N/A Q3AET8 35905315
    760522 7yzq:G (1.96) BS02 ALF ? N/A Q3AET8 35905315
    760523 7yzq:G (1.96) BS03 SF4 ? N/A Q3AET8 35905315
    760524 7yzq:H (1.96) BS01 SF4 ? N/A Q3AET8 35905315
    760525 7yzq:H (1.96) BS02 ADP ? N/A Q3AET8 35905315
    760526 7yzq:H (1.96) BS03 ALF ? N/A Q3AET8 35905315
    760527 7yzr:A (6.92) BS01 MG 7.2.2.13 GO:0000166 ... P05024 35926706
    760528 7yzr:A (6.92) BS02 BEF 7.2.2.13 GO:0000166 ... P05024 35926706
    760529 7yzr:C (6.92) BS01 MG 7.2.2.13 GO:0000166 ... P05024 35926706
    760530 7yzr:C (6.92) BS02 BEF 7.2.2.13 GO:0000166 ... P05024 35926706
    760531 7yzs:AAA (1.8) BS01 YZT ? GO:0042597 ... A9CEY9 35341160
    760532 7yzt:A (1.85) BS01 HEM N/A GO:0004601 ... N/A 39818373
    760533 7yzt:B (1.85) BS01 HEM N/A GO:0004601 ... N/A 39818373
    760534 7yzt:C (1.85) BS01 HEM N/A GO:0004601 ... N/A 39818373
    760535 7yzu:A (1.59) BS01 DO7 ? GO:0042597 ... A9CEY9 35341160
    760536 7yzx:A (1.9) BS01 peptide 3.4.21.110 GO:0004252 ... P15926 36478677
    760537 7yzx:A (1.9) BS02 CA 3.4.21.110 GO:0004252 ... P15926 36478677
    760538 7yzz:A (1.29) BS01 ZN ? GO:0004035 ... Q93P54 36194497
    760539 7yzz:A (1.29) BS02 ZN ? GO:0004035 ... Q93P54 36194497
    760540 7yzz:A (1.29) BS03 MG ? GO:0004035 ... Q93P54 36194497
    760541 7yzz:A (1.29) BS04 PO4 ? GO:0004035 ... Q93P54 36194497
    760542 7yzz:A (1.29) BS05 CL ? GO:0004035 ... Q93P54 36194497
    760543 7yzz:A (1.29) BS06 MG ? GO:0004035 ... Q93P54 36194497
    760544 7yzz:B (1.29) BS01 ZN ? GO:0004035 ... Q93P54 36194497
    760545 7yzz:B (1.29) BS02 ZN ? GO:0004035 ... Q93P54 36194497
    760546 7yzz:B (1.29) BS03 MG ? GO:0004035 ... Q93P54 36194497
    760547 7yzz:B (1.29) BS04 PO4 ? GO:0004035 ... Q93P54 36194497
    760548 7yzz:B (1.29) BS05 MG ? GO:0004035 ... Q93P54 36194497
    760549 7z00:B (2.6) BS01 ZN ? GO:0004035 ... Q93P54 36194497
    760550 7z00:B (2.6) BS02 ZN ? GO:0004035 ... Q93P54 36194497
    760551 7z00:B (2.6) BS03 MG ? GO:0004035 ... Q93P54 36194497
    760552 7z00:B (2.6) BS04 PO4 ? GO:0004035 ... Q93P54 36194497
    760553 7z01:A (1.82) BS01 GTP 3.6.5.- GO:0000226 ... P81947 35290733
    760554 7z01:A (1.82) BS02 CA 3.6.5.- GO:0000226 ... P81947 35290733
    760555 7z01:A (1.82) BS03 I8R 3.6.5.- GO:0000226 ... P81947 35290733
    760556 7z01:B (1.82) BS01 GDP ? GO:0000226 ... Q6B856 35290733
    760557 7z01:B (1.82) BS02 I8R ? GO:0000226 ... Q6B856 35290733
    760558 7z02:A (2.36) BS01 GTP 3.6.5.- GO:0000226 ... P81947 35290733
    760559 7z02:A (2.36) BS02 MG 3.6.5.- GO:0000226 ... P81947 35290733
    760560 7z02:B (2.36) BS01 GDP ? GO:0000226 ... Q6B856 35290733
    760561 7z02:B (2.36) BS02 I8N ? GO:0000226 ... Q6B856 35290733
    760562 7z03:A (3.7) BS01 dna ? GO:0000014 ... P0AG76 35987200
    760563 7z03:A (3.7) BS02 dna ? GO:0000014 ... P0AG76 35987200
    760564 7z03:A (3.7) BS03 MN ? GO:0000014 ... P0AG76 35987200
    760565 7z03:A (3.7) BS04 MN ? GO:0000014 ... P0AG76 35987200
    760566 7z03:B (3.7) BS01 MN ? GO:0000014 ... P0AG76 35987200
    760567 7z03:B (3.7) BS02 MN ? GO:0000014 ... P0AG76 35987200
    760568 7z03:C (3.7) BS01 dna ? GO:0000014 ... P13458 35987200
    760569 7z03:C (3.7) BS02 ADP ? GO:0000014 ... P13458 35987200
    760570 7z03:C (3.7) BS03 MG ? GO:0000014 ... P13458 35987200
    760571 7z03:C (3.7) BS04 ADP ? GO:0000014 ... P13458 35987200
    760572 7z03:D (3.7) BS01 dna ? GO:0000014 ... P13458 35987200
    760573 7z03:D (3.7) BS02 dna ? GO:0000014 ... P13458 35987200
    760574 7z03:D (3.7) BS03 ADP ? GO:0000014 ... P13458 35987200
    760575 7z03:D (3.7) BS04 ADP ? GO:0000014 ... P13458 35987200
    760576 7z03:D (3.7) BS05 MG ? GO:0000014 ... P13458 35987200
    760577 7z04:A (7.5) BS01 BEF 7.2.2.13 GO:0000166 ... P05024 35926706
    760578 7z04:A (7.5) BS02 MG 7.2.2.13 GO:0000166 ... P05024 35926706
    760579 7z04:C (7.5) BS01 BEF 7.2.2.13 GO:0000166 ... P05024 35926706
    760580 7z04:C (7.5) BS02 MG 7.2.2.13 GO:0000166 ... P05024 35926706
    760581 7z05:A (2.33) BS01 SAH 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.1.-.-
    3.1.13.-
    3.4.21.-
    3.6.4.12
    3.6.4.13
    N/A Q008X6 36265859
    760582 7z0e:P (1.22) BS01 SQL ? GO:0005216 ... P02945 35484235
    760583 7z0f:A (2.396) BS01 GTP N/A GO:0005200 ... N/A 35507869
    760584 7z0f:B (2.396) BS01 GDP N/A GO:0003924 ... N/A 35507869
    760585 7z0g:A (3.487) BS01 GTP N/A GO:0005200 ... N/A 35507869
    760586 7z0g:B (3.487) BS01 GDP N/A GO:0003924 ... N/A 35507869
    760587 7z0g:R (3.487) BS01 GTP N/A GO:0005200 ... N/A 35507869
    760588 7z0g:S (3.487) BS01 GDP N/A GO:0003924 ... N/A 35507869
    760589 7z0h:A (2.6) BS01 ZN 2.7.7.6 GO:0000428 ... P04051 36977686
    760590 7z0h:A (2.6) BS02 ZN 2.7.7.6 GO:0000428 ... P04051 36977686
    760591 7z0h:A (2.6) BS03 MG 2.7.7.6 GO:0000428 ... P04051 36977686
    760592 7z0h:A (2.6) BS04 MG 2.7.7.6 GO:0000428 ... P04051 36977686
    760593 7z0h:B (2.6) BS01 peptide 2.7.7.6 GO:0003677 ... P22276 36977686
    760594 7z0h:C (2.6) BS01 peptide ? GO:0003677 ... P07703 36977686
    760595 7z0h:I (2.6) BS01 MG ? GO:0003676 ... Q04307 36977686
    760596 7z0h:I (2.6) BS02 ZN ? GO:0003676 ... Q04307 36977686
    760597 7z0h:J (2.6) BS01 ZN ? GO:0001172 ... P22139 36977686
    760598 7z0h:K (2.6) BS01 peptide ? GO:0000428 ... P28000 36977686
    760599 7z0h:L (2.6) BS01 ZN ? GO:0003677 ... P40422 36977686
    760600 7z0n:AAA (2.4) BS01 MAN 3.1.4.39 GO:0001953 ... Q64610 35440138

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).