SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    760601 7zpq:AH (3.47) BS01 rna ? GO:0002181 ... P26786 36801861
    760602 7zpq:AI (3.47) BS01 rna ? GO:0000462 ... P0CX39 36801861
    760603 7zpq:AI (3.47) BS02 rna ? GO:0000462 ... P0CX39 36801861
    760604 7zpq:AJ (3.47) BS01 rna ? GO:0000462 ... O13516 36801861
    760605 7zpq:AK (3.47) BS01 rna ? N/A Q08745 36801861
    760606 7zpq:AL (3.47) BS01 rna ? GO:0000028 ... P0CX47 36801861
    760607 7zpq:AM (3.47) BS01 rna ? GO:0003735 ... P48589 36801861
    760608 7zpq:AN (3.47) BS01 rna ? GO:0000462 ... P05756 36801861
    760609 7zpq:AO (3.47) BS01 rna ? GO:0000028 ... P39516 36801861
    760610 7zpq:AP (3.47) BS01 rna ? GO:0003723 ... Q01855 36801861
    760611 7zpq:AQ (3.47) BS01 rna ? GO:0000462 ... P0CX51 36801861
    760612 7zpq:AR (3.47) BS01 rna ? GO:0000028 ... P14127 36801861
    760613 7zpq:AS (3.47) BS01 rna ? GO:0000054 ... P0CX55 36801861
    760614 7zpq:AT (3.47) BS01 rna ? GO:0000028 ... P07280 36801861
    760615 7zpq:AU (3.47) BS01 rna ? GO:0003723 ... P38701 36801861
    760616 7zpq:AW (3.47) BS01 rna ? GO:0002181 ... P0C0W1 36801861
    760617 7zpq:AX (3.47) BS01 rna ? GO:0000462 ... P0CX29 36801861
    760618 7zpq:AY (3.47) BS01 rna ? GO:0000462 ... P0CX31 36801861
    760619 7zpq:AZ (3.47) BS01 rna ? N/A Q3E792 36801861
    760620 7zpq:Aa (3.47) BS01 rna ? GO:0003735 ... P39939 36801861
    760621 7zpq:Ab (3.47) BS01 rna ? GO:0000028 ... P35997 36801861
    760622 7zpq:Ac (3.47) BS01 rna ? GO:0000028 ... Q3E7X9 36801861
    760623 7zpq:Ad (3.47) BS01 rna ? GO:0002181 ... P41057 36801861
    760624 7zpq:Ad (3.47) BS02 ZN ? GO:0002181 ... P41057 36801861
    760625 7zpq:Ae (3.47) BS01 rna ? GO:0002181 ... P0CX33 36801861
    760626 7zpq:Af (3.47) BS01 rna ? GO:0003735 ... P05759 36801861
    760627 7zpq:Af (3.47) BS02 ZN ? GO:0003735 ... P05759 36801861
    760628 7zpq:Ag (3.47) BS01 rna ? GO:0001965 ... P38011 36801861
    760629 7zpq:BA (3.47) BS01 rna ? GO:0002181 ... P0CX45 36801861
    760630 7zpq:BA (3.47) BS02 rna ? GO:0002181 ... P0CX45 36801861
    760631 7zpq:BB (3.47) BS01 rna ? GO:0000027 ... P14126 36801861
    760632 7zpq:BC (3.47) BS01 rna ? GO:0002181 ... P10664 36801861
    760633 7zpq:BC (3.47) BS02 rna ? GO:0002181 ... P10664 36801861
    760634 7zpq:BD (3.47) BS01 rna ? GO:0000027 ... P26321 36801861
    760635 7zpq:BD (3.47) BS02 rna ? GO:0000027 ... P26321 36801861
    760636 7zpq:BE (3.47) BS01 rna ? GO:0000027 ... P05739 36801861
    760637 7zpq:BF (3.47) BS01 rna ? GO:0000463 ... P05737 36801861
    760638 7zpq:BF (3.47) BS02 rna ? GO:0000463 ... P05737 36801861
    760639 7zpq:BG (3.47) BS01 rna ? GO:0000470 ... P17076 36801861
    760640 7zpq:BG (3.47) BS02 rna ? GO:0000470 ... P17076 36801861
    760641 7zpq:BH (3.47) BS01 rna ? GO:0002181 ... P05738 36801861
    760642 7zpq:BI (3.47) BS01 rna ? GO:0000027 ... P41805 36801861
    760643 7zpq:BI (3.47) BS02 rna ? GO:0000027 ... P41805 36801861
    760644 7zpq:BJ (3.47) BS01 rna ? GO:0000027 ... Q3E757 36801861
    760645 7zpq:BJ (3.47) BS02 rna ? GO:0000027 ... Q3E757 36801861
    760646 7zpq:BJ (3.47) BS03 rna ? GO:0000027 ... Q3E757 36801861
    760647 7zpq:BK (3.47) BS01 rna ? GO:0002181 ... Q12690 36801861
    760648 7zpq:BK (3.47) BS02 rna ? GO:0002181 ... Q12690 36801861
    760649 7zpq:BL (3.47) BS01 rna ? GO:0000027 ... P36105 36801861
    760650 7zpq:BM (3.47) BS01 rna ? GO:0002181 ... P05748 36801861
    760651 7zpq:BM (3.47) BS02 rna ? GO:0002181 ... P05748 36801861
    760652 7zpq:BN (3.47) BS01 rna ? GO:0000470 ... P26784 36801861
    760653 7zpq:BO (3.47) BS01 rna ? GO:0000448 ... P05740 36801861
    760654 7zpq:BO (3.47) BS02 rna ? GO:0000448 ... P05740 36801861
    760655 7zpq:BP (3.47) BS01 rna ? GO:0002181 ... P0CX49 36801861
    760656 7zpq:BQ (3.47) BS01 rna ? GO:0002181 ... P0CX82 36801861
    760657 7zpq:BQ (3.47) BS02 rna ? GO:0002181 ... P0CX82 36801861
    760658 7zpq:BR (3.47) BS01 rna ? GO:0002181 ... P0CX23 36801861
    760659 7zpq:BR (3.47) BS02 rna ? GO:0002181 ... P0CX23 36801861
    760660 7zpq:BS (3.47) BS01 rna ? GO:0002181 ... Q02753 36801861
    760661 7zpq:BS (3.47) BS02 rna ? GO:0002181 ... Q02753 36801861
    760662 7zpq:BT (3.47) BS01 rna ? GO:0003735 ... P05749 36801861
    760663 7zpq:BU (3.47) BS01 rna ? GO:0002181 ... P0CX41 36801861
    760664 7zpq:BV (3.47) BS01 rna ? GO:0003735 ... P04449 36801861
    760665 7zpq:BW (3.47) BS01 rna ? GO:0003735 ... P04456 36801861
    760666 7zpq:BW (3.47) BS02 rna ? GO:0003735 ... P04456 36801861
    760667 7zpq:BX (3.47) BS01 rna ? GO:0002181 ... P05743 36801861
    760668 7zpq:BX (3.47) BS02 rna ? GO:0002181 ... P05743 36801861
    760669 7zpq:BY (3.47) BS01 rna ? GO:0002181 ... P0C2H6 36801861
    760670 7zpq:BZ (3.47) BS01 rna ? GO:0002181 ... P02406 36801861
    760671 7zpq:Ba (3.47) BS01 rna ? GO:0002181 ... P05747 36801861
    760672 7zpq:Bb (3.47) BS01 rna ? GO:0002181 ... P14120 36801861
    760673 7zpq:Bc (3.47) BS01 rna ? GO:0002181 ... P0C2H8 36801861
    760674 7zpq:Bd (3.47) BS01 rna ? GO:0002181 ... P38061 36801861
    760675 7zpq:Be (3.47) BS01 rna ? GO:0000027 ... P05744 36801861
    760676 7zpq:Bf (3.47) BS01 rna ? GO:0002181 ... P87262 36801861
    760677 7zpq:Bf (3.47) BS02 ZN ? GO:0002181 ... P87262 36801861
    760678 7zpq:Bg (3.47) BS01 rna ? GO:0000463 ... P0CX84 36801861
    760679 7zpq:Bg (3.47) BS02 rna ? GO:0000463 ... P0CX84 36801861
    760680 7zpq:Bh (3.47) BS01 rna ? GO:0002181 ... P05745 36801861
    760681 7zpq:Bi (3.47) BS01 rna ? GO:0000448 ... P49166 36801861
    760682 7zpq:Bi (3.47) BS02 rna ? GO:0000448 ... P49166 36801861
    760683 7zpq:Bi (3.47) BS03 ZN ? GO:0000448 ... P49166 36801861
    760684 7zpq:Bj (3.47) BS01 rna ? GO:0002181 ... P49167 36801861
    760685 7zpq:Bk (3.47) BS01 rna ? GO:0002181 ... P04650 36801861
    760686 7zpq:Bk (3.47) BS02 rna ? GO:0002181 ... P04650 36801861
    760687 7zpq:Bl (3.47) BS01 rna ? GO:0003735 ... P0CH08 36801861
    760688 7zpq:Bl (3.47) BS02 ZN ? GO:0003735 ... P0CH08 36801861
    760689 7zpq:Bn (3.47) BS01 rna ? GO:0002181 ... P0CX27 36801861
    760690 7zpq:Bn (3.47) BS02 ZN ? GO:0002181 ... P0CX27 36801861
    760691 7zpq:Bo (3.47) BS01 rna ? GO:0002181 ... P0CX25 36801861
    760692 7zpq:Bo (3.47) BS02 ZN ? GO:0002181 ... P0CX25 36801861
    760693 7zpq:CA (3.47) BS01 rna 3.6.4.13 GO:0002181 ... P53327 36801861
    760694 7zpq:CC (3.47) BS01 ZN ? GO:0005515 ... P36119 36801861
    760695 7zpq:CC (3.47) BS02 ZN ? GO:0005515 ... P36119 36801861
    760696 7zpr:A (3.56) BS01 ADP ? GO:0005524 ... O87952 N/A
    760697 7zpr:B (3.56) BS01 ADP ? GO:0005524 ... O87952 N/A
    760698 7zpr:D (3.56) BS01 ADP ? GO:0005524 ... O87952 N/A
    760699 7zpr:D (3.56) BS02 MG ? GO:0005524 ... O87952 N/A
    760700 7zpr:E (3.56) BS01 ADP ? GO:0005524 ... O87952 N/A
    760701 7zpr:F (3.56) BS01 ADP ? GO:0005524 ... O87952 N/A
    760702 7zpr:H (3.56) BS01 ADP ? GO:0005524 ... O87952 N/A
    760703 7zpr:J (3.56) BS01 ADP ? GO:0005524 ... O87952 N/A
    760704 7zpr:L (3.56) BS01 ADP ? GO:0005524 ... O87952 N/A
    760705 7zps:A (1.56) BS01 HEC ? GO:0046872 ... G1UBD5 37100286
    760706 7zps:A (1.56) BS02 NO ? GO:0046872 ... G1UBD5 37100286
    760707 7zps:B (1.56) BS01 HEC ? GO:0046872 ... G1UBD5 37100286
    760708 7zps:B (1.56) BS02 NO ? GO:0046872 ... G1UBD5 37100286
    760709 7zpu:M (1.96) BS01 ATP ? GO:0000902 ... A0A150MJ77 37818717
    760710 7zpw:A (1.8) BS01 SIW N/A N/A N/A N/A
    760711 7zpw:D (1.8) BS01 SIW N/A N/A N/A N/A
    760712 7zpy:A (1.9) BS01 peptide 3.1.-.- GO:0003723 ... C3W5X6 36265804
    760713 7zpz:A (1.57) BS01 SIW N/A N/A N/A N/A
    760714 7zq1:B (1.52) BS01 JVL 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003723 ... Q32ZE1 38809037
    760715 7zq2:A (1.6) BS01 SIW N/A N/A N/A N/A
    760716 7zq2:A (1.6) BS02 SIW N/A N/A N/A N/A
    760717 7zq2:A (1.6) BS03 SIW N/A N/A N/A N/A
    760718 7zq2:A (1.6) BS04 SIW N/A N/A N/A N/A
    760719 7zq3:O (1.5) BS01 NDP 1.2.1.13 GO:0005515 ... P50362 35793584
    760720 7zq3:R (1.5) BS01 NDP 1.2.1.13 GO:0005515 ... P50362 35793584
    760721 7zq4:O (1.7) BS01 NDP 1.2.1.13 GO:0005515 ... P50362 35793584
    760722 7zq4:R (1.7) BS01 NDP 1.2.1.13 GO:0005515 ... P50362 35793584
    760723 7zq5:0 (2.7) BS01 rna ? GO:0000027 ... P0A7M2 35869078
    760724 7zq5:1 (2.7) BS01 rna ? GO:0000027 ... P0A7M6 35869078
    760725 7zq5:2 (2.7) BS01 rna ? GO:0000027 ... P0AG51 35869078
    760726 7zq5:2 (2.7) BS02 rna ? GO:0000027 ... P0AG51 35869078
    760727 7zq5:3 (2.7) BS01 rna ? GO:0000027 ... P0A7N4 35869078
    760728 7zq5:4 (2.7) BS01 rna ? GO:0000027 ... P0A7N9 35869078
    760729 7zq5:6 (2.7) BS01 rna ? GO:0002181 ... P0A7P5 35869078
    760730 7zq5:7 (2.7) BS01 rna ? GO:0002181 ... P0A7Q1 35869078
    760731 7zq5:8 (2.7) BS01 rna ? GO:0002181 ... P0A7Q6 35869078
    760732 7zq5:c (2.7) BS01 rna ? GO:0000027 ... P60422 35869078
    760733 7zq5:d (2.7) BS01 rna ? GO:0000027 ... P60438 35869078
    760734 7zq5:e (2.7) BS01 rna ? GO:0001070 ... P60723 35869078
    760735 7zq5:f (2.7) BS01 rna ? GO:0000027 ... P62399 35869078
    760736 7zq5:f (2.7) BS02 rna ? GO:0000027 ... P62399 35869078
    760737 7zq5:g (2.7) BS01 rna ? GO:0000027 ... P0AG55 35869078
    760738 7zq5:h (2.7) BS01 rna ? GO:0002181 ... P0A7R1 35869078
    760739 7zq5:j (2.7) BS01 rna ? GO:0002181 ... P0AA10 35869078
    760740 7zq5:k (2.7) BS01 rna ? GO:0002181 ... P0ADY3 35869078
    760741 7zq5:l (2.7) BS01 rna ? GO:0002181 ... P02413 35869078
    760742 7zq5:m (2.7) BS01 rna ? GO:0000027 ... P0ADY7 35869078
    760743 7zq5:m (2.7) BS02 rna ? GO:0000027 ... P0ADY7 35869078
    760744 7zq5:n (2.7) BS01 rna ? GO:0000027 ... P0AG44 35869078
    760745 7zq5:o (2.7) BS01 rna ? GO:0002181 ... P0C018 35869078
    760746 7zq5:o (2.7) BS02 rna ? GO:0002181 ... P0C018 35869078
    760747 7zq5:p (2.7) BS01 rna ? GO:0000027 ... P0A7K6 35869078
    760748 7zq5:q (2.7) BS01 rna ? GO:0000027 ... P0A7L3 35869078
    760749 7zq5:r (2.7) BS01 rna ? GO:0002181 ... P0AG48 35869078
    760750 7zq5:s (2.7) BS01 rna ? GO:0002181 ... P61175 35869078
    760751 7zq5:t (2.7) BS01 rna ? GO:0000027 ... P0ADZ0 35869078
    760752 7zq5:u (2.7) BS01 rna ? GO:0003723 ... P60624 35869078
    760753 7zq5:w (2.7) BS01 rna ? GO:0000027 ... P68919 35869078
    760754 7zq5:y (2.7) BS01 rna ? GO:0000027 ... P0A7L8 35869078
    760755 7zq5:y (2.7) BS02 rna ? GO:0000027 ... P0A7L8 35869078
    760756 7zq6:0 (2.75) BS01 rna ? GO:0000027 ... P0A7M2 35869078
    760757 7zq6:1 (2.75) BS01 rna ? GO:0000027 ... P0A7M6 35869078
    760758 7zq6:2 (2.75) BS01 rna ? GO:0000027 ... P0AG51 35869078
    760759 7zq6:2 (2.75) BS02 rna ? GO:0000027 ... P0AG51 35869078
    760760 7zq6:3 (2.75) BS01 rna ? GO:0000027 ... P0A7N4 35869078
    760761 7zq6:4 (2.75) BS01 rna ? GO:0000027 ... P0A7N9 35869078
    760762 7zq6:6 (2.75) BS01 rna ? GO:0002181 ... P0A7P5 35869078
    760763 7zq6:7 (2.75) BS01 rna ? GO:0002181 ... P0A7Q1 35869078
    760764 7zq6:8 (2.75) BS01 rna ? GO:0003735 ... A0A2X1PTA3 35869078
    760765 7zq6:c (2.75) BS01 rna ? GO:0000027 ... P60422 35869078
    760766 7zq6:d (2.75) BS01 rna ? GO:0000027 ... P60438 35869078
    760767 7zq6:e (2.75) BS01 rna ? GO:0001070 ... P60723 35869078
    760768 7zq6:f (2.75) BS01 rna ? GO:0000027 ... P62399 35869078
    760769 7zq6:f (2.75) BS02 rna ? GO:0000027 ... P62399 35869078
    760770 7zq6:f (2.75) BS03 rna ? GO:0000027 ... P62399 35869078
    760771 7zq6:g (2.75) BS01 rna ? GO:0000027 ... P0AG55 35869078
    760772 7zq6:h (2.75) BS01 rna ? GO:0002181 ... P0A7R1 35869078
    760773 7zq6:j (2.75) BS01 rna ? GO:0002181 ... P0AA10 35869078
    760774 7zq6:k (2.75) BS01 rna ? GO:0002181 ... P0ADY3 35869078
    760775 7zq6:l (2.75) BS01 rna ? GO:0002181 ... P02413 35869078
    760776 7zq6:m (2.75) BS01 rna ? GO:0000027 ... P0ADY7 35869078
    760777 7zq6:m (2.75) BS02 rna ? GO:0000027 ... P0ADY7 35869078
    760778 7zq6:n (2.75) BS01 rna ? GO:0000027 ... P0AG44 35869078
    760779 7zq6:o (2.75) BS01 rna ? GO:0002181 ... P0C018 35869078
    760780 7zq6:o (2.75) BS02 rna ? GO:0002181 ... P0C018 35869078
    760781 7zq6:p (2.75) BS01 rna ? GO:0000027 ... P0A7K6 35869078
    760782 7zq6:q (2.75) BS01 rna ? GO:0000027 ... P0A7L3 35869078
    760783 7zq6:r (2.75) BS01 rna ? GO:0002181 ... P0AG48 35869078
    760784 7zq6:s (2.75) BS01 rna ? GO:0002181 ... P61175 35869078
    760785 7zq6:t (2.75) BS01 rna ? GO:0000027 ... P0ADZ0 35869078
    760786 7zq6:u (2.75) BS01 rna ? GO:0000027 ... P60624 35869078
    760787 7zq6:w (2.75) BS01 rna ? GO:0000027 ... P68919 35869078
    760788 7zq6:y (2.75) BS01 rna ? GO:0000027 ... P0A7L8 35869078
    760789 7zq6:y (2.75) BS02 rna ? GO:0000027 ... P0A7L8 35869078
    760790 7zq9:1 (2.74) BS01 CLA ? GO:0009416 ... Q05093 36229605
    760791 7zq9:1 (2.74) BS02 CHL ? GO:0009416 ... Q05093 36229605
    760792 7zq9:1 (2.74) BS03 CLA ? GO:0009416 ... Q05093 36229605
    760793 7zq9:1 (2.74) BS04 CLA ? GO:0009416 ... Q05093 36229605
    760794 7zq9:1 (2.74) BS05 CLA ? GO:0009416 ... Q05093 36229605
    760795 7zq9:1 (2.74) BS06 CHL ? GO:0009416 ... Q05093 36229605
    760796 7zq9:1 (2.74) BS07 CHL ? GO:0009416 ... Q05093 36229605
    760797 7zq9:1 (2.74) BS08 CLA ? GO:0009416 ... Q05093 36229605
    760798 7zq9:1 (2.74) BS09 CLA ? GO:0009416 ... Q05093 36229605
    760799 7zq9:1 (2.74) BS10 CLA ? GO:0009416 ... Q05093 36229605
    760800 7zq9:1 (2.74) BS11 CLA ? GO:0009416 ... Q05093 36229605

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).