SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    762001 7z87:B (2.91) BS01 dna 3.6.4.-
    4.2.99.-
    GO:0000723 ... P12956 36604499
    762002 7z87:B (2.91) BS02 dna 3.6.4.-
    4.2.99.-
    GO:0000723 ... P12956 36604499
    762003 7z87:C (2.91) BS01 dna 3.6.4.- GO:0000723 ... P13010 36604499
    762004 7z87:C (2.91) BS02 dna 3.6.4.- GO:0000723 ... P13010 36604499
    762005 7z88:A (3.33) BS01 dna 2.7.11.1 GO:0000460 ... P78527 36604499
    762006 7z88:A (3.33) BS02 dna 2.7.11.1 GO:0000460 ... P78527 36604499
    762007 7z88:A (3.33) BS03 1IX 2.7.11.1 GO:0000460 ... P78527 36604499
    762008 7z88:B (3.33) BS01 dna 3.6.4.-
    4.2.99.-
    GO:0000723 ... P12956 36604499
    762009 7z88:B (3.33) BS02 dna 3.6.4.-
    4.2.99.-
    GO:0000723 ... P12956 36604499
    762010 7z88:C (3.33) BS01 dna 3.6.4.- GO:0000723 ... P13010 36604499
    762011 7z88:C (3.33) BS02 dna 3.6.4.- GO:0000723 ... P13010 36604499
    762012 7z8b:R (2.8) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0000082 ... P62877 35982156
    762013 7z8b:R (2.8) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0000082 ... P62877 35982156
    762014 7z8b:R (2.8) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0000082 ... P62877 35982156
    762015 7z8d:H (2.14) BS01 NKP ? GO:0019684 ... P0C0Y7 N/A
    762016 7z8d:L (2.14) BS01 BCL ? GO:0009772 ... P0C0Y8 N/A
    762017 7z8d:L (2.14) BS02 BCL ? GO:0009772 ... P0C0Y8 N/A
    762018 7z8d:L (2.14) BS03 BPH ? GO:0009772 ... P0C0Y8 N/A
    762019 7z8d:L (2.14) BS04 BCL ? GO:0009772 ... P0C0Y8 N/A
    762020 7z8d:L (2.14) BS05 BPH ? GO:0009772 ... P0C0Y8 N/A
    762021 7z8d:L (2.14) BS06 FE ? GO:0009772 ... P0C0Y8 N/A
    762022 7z8d:M (2.14) BS01 BCL ? GO:0009772 ... P0C0Y9 N/A
    762023 7z8d:M (2.14) BS02 BPH ? GO:0009772 ... P0C0Y9 N/A
    762024 7z8d:M (2.14) BS03 NKP ? GO:0009772 ... P0C0Y9 N/A
    762025 7z8d:M (2.14) BS04 NKP ? GO:0009772 ... P0C0Y9 N/A
    762026 7z8d:M (2.14) BS05 U10 ? GO:0009772 ... P0C0Y9 N/A
    762027 7z8d:M (2.14) BS06 BCL ? GO:0009772 ... P0C0Y9 N/A
    762028 7z8d:M (2.14) BS07 BCL ? GO:0009772 ... P0C0Y9 N/A
    762029 7z8d:M (2.14) BS08 BPH ? GO:0009772 ... P0C0Y9 N/A
    762030 7z8d:M (2.14) BS09 FE ? GO:0009772 ... P0C0Y9 N/A
    762031 7z8d:M (2.14) BS10 SPN ? GO:0009772 ... P0C0Y9 N/A
    762032 7z8e:A (1.58) BS01 peptide ? GO:0015833 ... A0A222JNH8 36802165
    762033 7z8e:A (1.58) BS02 peptide ? GO:0015833 ... A0A222JNH8 36802165
    762034 7z8f:A (20.0) BS01 ADP ? N/A F2Z5G5 36071160
    762035 7z8f:B (20.0) BS01 ADP ? N/A F2Z5G5 36071160
    762036 7z8f:C (20.0) BS01 ADP ? N/A F2Z5G5 36071160
    762037 7z8f:D (20.0) BS01 ADP ? N/A F2Z5G5 36071160
    762038 7z8f:E (20.0) BS01 ADP ? N/A F2Z5G5 36071160
    762039 7z8f:F (20.0) BS01 ADP ? N/A F2Z5G5 36071160
    762040 7z8f:G (20.0) BS01 ADP ? N/A F2Z5G5 36071160
    762041 7z8f:H (20.0) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 36071160
    762042 7z8f:I (20.0) BS01 ADP ? N/A F2Z5G5 36071160
    762043 7z8f:J (20.0) BS01 ATP ? GO:0005200 ... I3LHK5 36071160
    762044 7z8f:e (20.0) BS01 ADP ? GO:0001673 ... Q14204 36071160
    762045 7z8f:e (20.0) BS02 ATP ? GO:0001673 ... Q14204 36071160
    762046 7z8f:e (20.0) BS03 ANP ? GO:0001673 ... Q14204 36071160
    762047 7z8f:e (20.0) BS04 ANP ? GO:0001673 ... Q14204 36071160
    762048 7z8f:f (20.0) BS01 ADP ? GO:0001673 ... Q14204 36071160
    762049 7z8f:f (20.0) BS02 ATP ? GO:0001673 ... Q14204 36071160
    762050 7z8f:f (20.0) BS03 ANP ? GO:0001673 ... Q14204 36071160
    762051 7z8f:f (20.0) BS04 ANP ? GO:0001673 ... Q14204 36071160
    762052 7z8f:m (20.0) BS01 ADP ? GO:0001673 ... Q14204 36071160
    762053 7z8f:m (20.0) BS02 ATP ? GO:0001673 ... Q14204 36071160
    762054 7z8f:m (20.0) BS03 ANP ? GO:0001673 ... Q14204 36071160
    762055 7z8f:m (20.0) BS04 ANP ? GO:0001673 ... Q14204 36071160
    762056 7z8f:n (20.0) BS01 ADP ? GO:0001673 ... Q14204 36071160
    762057 7z8f:n (20.0) BS02 ATP ? GO:0001673 ... Q14204 36071160
    762058 7z8f:n (20.0) BS03 ANP ? GO:0001673 ... Q14204 36071160
    762059 7z8f:n (20.0) BS04 ANP ? GO:0001673 ... Q14204 36071160
    762060 7z8g:A (3.52) BS01 ADP ? GO:0001673 ... Q14204 36071160
    762061 7z8g:A (3.52) BS02 ATP ? GO:0001673 ... Q14204 36071160
    762062 7z8g:A (3.52) BS03 MG ? GO:0001673 ... Q14204 36071160
    762063 7z8g:A (3.52) BS04 ANP ? GO:0001673 ... Q14204 36071160
    762064 7z8g:A (3.52) BS05 ANP ? GO:0001673 ... Q14204 36071160
    762065 7z8h:A (3.41) BS01 ADP ? GO:0001673 ... Q14204 36071160
    762066 7z8h:A (3.41) BS02 ATP ? GO:0001673 ... Q14204 36071160
    762067 7z8h:A (3.41) BS03 ANP ? GO:0001673 ... Q14204 36071160
    762068 7z8h:A (3.41) BS04 MG ? GO:0001673 ... Q14204 36071160
    762069 7z8i:A (3.3) BS01 ADP ? N/A F2Z5G5 36071160
    762070 7z8i:B (3.3) BS01 ADP ? N/A F2Z5G5 36071160
    762071 7z8i:C (3.3) BS01 ADP ? N/A F2Z5G5 36071160
    762072 7z8i:D (3.3) BS01 ADP ? N/A F2Z5G5 36071160
    762073 7z8i:E (3.3) BS01 ADP ? N/A F2Z5G5 36071160
    762074 7z8i:F (3.3) BS01 ADP ? N/A F2Z5G5 36071160
    762075 7z8l:f (4.9) BS01 ADP ? GO:0001673 ... Q14204 36071160
    762076 7z8l:f (4.9) BS02 ATP ? GO:0001673 ... Q14204 36071160
    762077 7z8l:f (4.9) BS03 ANP ? GO:0001673 ... Q14204 36071160
    762078 7z8l:f (4.9) BS04 ANP ? GO:0001673 ... Q14204 36071160
    762079 7z8m:G (3.37) BS01 ADP ? N/A F2Z5G5 36071160
    762080 7z8m:H (3.37) BS01 ADP 3.6.4.- GO:0001738 ... Q6QAQ1 36071160
    762081 7z8m:I (3.37) BS01 peptide ? N/A F2Z5G5 36071160
    762082 7z8m:I (3.37) BS02 ADP ? N/A F2Z5G5 36071160
    762083 7z8m:I (3.37) BS03 MG ? N/A F2Z5G5 36071160
    762084 7z8m:J (3.37) BS01 ATP ? GO:0005200 ... I3LHK5 36071160
    762085 7z8m:V (3.37) BS01 peptide ? GO:0005813 ... A0A286ZK88 36071160
    762086 7z8m:Y (3.37) BS01 ZN ? GO:0001725 ... A0A4X1TB62 36071160
    762087 7z8m:Y (3.37) BS02 ZN ? GO:0001725 ... A0A4X1TB62 36071160
    762088 7z8n:A (2.64) BS01 CA 2.7.13.3 GO:0000155 ... G3XD98 35767996
    762089 7z8n:B (2.64) BS01 CA 2.7.13.3 GO:0000155 ... G3XD98 35767996
    762090 7z8o:A (0.96) BS01 peptide ? N/A P0DTC2 37328472
    762091 7z8p:A (1.97) BS01 IFZ ? GO:0003723 ... Q9Y5A9 36110386
    762092 7z8p:B (1.97) BS01 IFZ ? GO:0003723 ... Q9Y5A9 36110386
    762093 7z8q:d (4.08) BS01 ZN 2.7.7.6 GO:0000287 ... P9WGY7 N/A
    762094 7z8q:d (4.08) BS02 ZN 2.7.7.6 GO:0000287 ... P9WGY7 N/A
    762095 7z8q:d (4.08) BS03 MG 2.7.7.6 GO:0000287 ... P9WGY7 N/A
    762096 7z8r:R (2.7) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0000082 ... P62877 37028429
    762097 7z8r:R (2.7) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0000082 ... P62877 37028429
    762098 7z8r:R (2.7) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0000082 ... P62877 37028429
    762099 7z8s:E (3.9) BS01 dna ? GO:0003677 ... G0S6C0 37106137
    762100 7z8s:E (3.9) BS02 dna ? GO:0003677 ... G0S6C0 37106137
    762101 7z8t:R (3.0) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0000082 ... P62877 37028429
    762102 7z8t:R (3.0) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0000082 ... P62877 37028429
    762103 7z8t:R (3.0) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0000082 ... P62877 37028429
    762104 7z8u:A (2.0) BS01 PRP 2.4.2.17 GO:0000105 ... Q4FQF7 36494361
    762105 7z8u:A (2.0) BS02 ATP 2.4.2.17 GO:0000105 ... Q4FQF7 36494361
    762106 7z8v:R (2.7) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0000082 ... P62877 37028429
    762107 7z8v:R (2.7) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0000082 ... P62877 37028429
    762108 7z8v:R (2.7) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0000082 ... P62877 37028429
    762109 7z8w:A (1.9) BS01 IHR ? GO:0003723 ... Q9Y5A9 36110386
    762110 7z8w:B (1.9) BS01 IHR ? GO:0003723 ... Q9Y5A9 36110386
    762111 7z8w:B (1.9) BS02 IHR ? GO:0003723 ... Q9Y5A9 36110386
    762112 7z8x:A (1.96) BS01 IGX ? GO:0003723 ... Q9Y5A9 36110386
    762113 7z8y:A (2.29) BS01 peptide ? N/A O94901 38291267
    762114 7z8y:B (2.29) BS01 peptide ? N/A O94901 38291267
    762115 7z8y:C (2.29) BS01 peptide ? N/A O94901 38291267
    762116 7z92:A (1.91) BS01 IGT ? GO:0003723 ... Q9Y5A9 36110386
    762117 7z92:B (1.91) BS01 IGT ? GO:0003723 ... Q9Y5A9 36110386
    762118 7z93:A (1.97) BS01 IHF ? GO:0003723 ... Q9Y5A9 36110386
    762119 7z93:B (1.97) BS01 IHF ? GO:0003723 ... Q9Y5A9 36110386
    762120 7z94:A (1.74) BS01 FAD ? N/A E6V140 36762980
    762121 7z94:A (1.74) BS02 IND ? N/A E6V140 36762980
    762122 7z94:A (1.74) BS03 IND ? N/A E6V140 36762980
    762123 7z94:A (1.74) BS04 IND ? N/A E6V140 36762980
    762124 7z94:A (1.74) BS05 IND ? N/A E6V140 36762980
    762125 7z94:A (1.74) BS06 IND ? N/A E6V140 36762980
    762126 7z94:A (1.74) BS07 IND ? N/A E6V140 36762980
    762127 7z94:A (1.74) BS08 IND ? N/A E6V140 36762980
    762128 7z97:A (1.46) BS01 FAD ? N/A E6V140 36762980
    762129 7z97:A (1.46) BS02 FK1 ? N/A E6V140 36762980
    762130 7z98:A (1.73) BS01 FAD ? N/A E6V140 36762980
    762131 7z98:A (1.73) BS02 16R ? N/A E6V140 36762980
    762132 7z99:A (1.92) BS01 FAD ? N/A E6V140 36762980
    762133 7z99:A (1.92) BS02 IH0 ? N/A E6V140 36762980
    762134 7z99:A (1.92) BS03 IH0 ? N/A E6V140 36762980
    762135 7z9c:A (3.06) BS01 dna 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762136 7z9c:A (3.06) BS02 dna 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762137 7z9c:B (3.06) BS01 dna 5.6.2.2 GO:0003677 ... P0AES6 36741192
    762138 7z9c:B (3.06) BS02 BWH 5.6.2.2 GO:0003677 ... P0AES6 36741192
    762139 7z9c:C (3.06) BS01 dna 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762140 7z9c:C (3.06) BS02 dna 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762141 7z9c:C (3.06) BS03 BWH 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762142 7z9c:D (3.06) BS01 dna 5.6.2.2 GO:0003677 ... P0AES6 36741192
    762143 7z9c:D (3.06) BS02 dna 5.6.2.2 GO:0003677 ... P0AES6 36741192
    762144 7z9d:A (1.88) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 35906527
    762145 7z9e:A (1.48) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 35906527
    762146 7z9f:A (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P07478 35775010
    762147 7z9f:X (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P07478 35775010
    762148 7z9g:A (3.25) BS01 dna 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762149 7z9g:A (3.25) BS02 dna 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762150 7z9g:A (3.25) BS03 IM0 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762151 7z9g:B (3.25) BS01 dna 5.6.2.2 GO:0003677 ... P0AES6 36741192
    762152 7z9g:C (3.25) BS01 dna 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762153 7z9g:C (3.25) BS02 dna 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762154 7z9g:C (3.25) BS03 IM0 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762155 7z9g:D (3.25) BS01 dna 5.6.2.2 GO:0003677 ... P0AES6 36741192
    762156 7z9g:D (3.25) BS02 dna 5.6.2.2 GO:0003677 ... P0AES6 36741192
    762157 7z9h:AAA (1.34) BS01 IIV 3.6.1.- N/A Q6PL18 36367089
    762158 7z9i:AAA (1.5) BS01 IJR 3.6.1.- N/A Q6PL18 36367089
    762159 7z9j:AAA (1.9) BS01 IIY 3.6.1.- N/A Q6PL18 36367089
    762160 7z9k:A (3.25) BS01 dna 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762161 7z9k:A (3.25) BS02 dna 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762162 7z9k:A (3.25) BS03 IL1 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762163 7z9k:B (3.25) BS01 dna 5.6.2.2 GO:0003677 ... P0AES6 36741192
    762164 7z9k:B (3.25) BS02 dna 5.6.2.2 GO:0003677 ... P0AES6 36741192
    762165 7z9k:B (3.25) BS03 IL1 5.6.2.2 GO:0003677 ... P0AES6 36741192
    762166 7z9k:C (3.25) BS01 dna 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762167 7z9k:C (3.25) BS02 dna 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762168 7z9k:C (3.25) BS03 IL1 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762169 7z9k:D (3.25) BS01 dna 5.6.2.2 GO:0003677 ... P0AES6 36741192
    762170 7z9k:D (3.25) BS02 dna 5.6.2.2 GO:0003677 ... P0AES6 36741192
    762171 7z9m:A (3.3) BS01 dna 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762172 7z9m:A (3.3) BS02 dna 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762173 7z9m:A (3.3) BS03 IL1 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762174 7z9m:B (3.3) BS01 dna 5.6.2.2 GO:0003677 ... P0AES6 36741192
    762175 7z9m:B (3.3) BS02 dna 5.6.2.2 GO:0003677 ... P0AES6 36741192
    762176 7z9m:C (3.3) BS01 dna 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762177 7z9m:C (3.3) BS02 dna 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762178 7z9m:C (3.3) BS03 IL1 5.6.2.2 GO:0003677 ... P0AES4 36741192
    762179 7z9m:D (3.3) BS01 dna 5.6.2.2 GO:0003677 ... P0AES6 36741192
    762180 7z9m:D (3.3) BS02 dna 5.6.2.2 GO:0003677 ... P0AES6 36741192
    762181 7z9n:AAA (1.34) BS01 IJ3 3.6.1.- N/A Q6PL18 36367089
    762182 7z9o:AAA (1.47) BS01 IK3 3.6.1.- N/A Q6PL18 36367089
    762183 7z9s:AAA (1.5) BS01 IJI 3.6.1.- N/A Q6PL18 36367089
    762184 7z9t:AAA (2.6) BS01 87B 2.7.11.24 GO:0000077 ... P47811 37308482
    762185 7z9t:BBB (2.6) BS01 87B 2.7.11.24 GO:0000077 ... P47811 37308482
    762186 7z9t:BBB (2.6) BS02 ATP 2.7.11.24 GO:0000077 ... P47811 37308482
    762187 7z9u:AAA (1.76) BS01 ARG 3.6.1.- N/A Q6PL18 36367089
    762188 7z9u:AAA (1.76) BS02 8WS 3.6.1.- N/A Q6PL18 36367089
    762189 7z9v:A (1.9) BS01 GZ6 2.7.7.15 GO:0003824 ... Q8IEE9 N/A
    762190 7z9v:A (1.9) BS02 IJ8 2.7.7.15 GO:0003824 ... Q8IEE9 N/A
    762191 7z9v:A (1.9) BS03 IJ8 2.7.7.15 GO:0003824 ... Q8IEE9 N/A
    762192 7z9w:AAA (0.988) BS01 BYZ ? N/A O60885 36367089
    762193 7z9y:AAA (1.04) BS01 PYZ ? N/A O60885 36367089
    762194 7z9y:AAA (1.04) BS02 PYZ ? N/A O60885 36367089
    762195 7z9z:AAA (2.5) BS01 PX9 ? GO:0005515 ... P02754 37610054
    762196 7za0:AAA (2.1) BS01 PX9 ? GO:0005515 ... P02754 37610054
    762197 7za1:E (4.1) BS01 MAN ? N/A F1LW30 36240740
    762198 7za1:F (4.1) BS01 MAN ? N/A F1LW30 36240740
    762199 7za1:H (4.1) BS01 MAN ? N/A F1LW30 36240740
    762200 7za2:E (4.6) BS01 MAN ? N/A F1LW30 36240740

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).