SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    762001 7zrs:AB (4.8) BS01 rna ? GO:0000462 ... P33442 36801861
    762002 7zrs:AB (4.8) BS02 rna ? GO:0000462 ... P33442 36801861
    762003 7zrs:AC (4.8) BS01 rna ? GO:0003723 ... P25443 36801861
    762004 7zrs:AD (4.8) BS01 rna ? GO:0000054 ... P05750 36801861
    762005 7zrs:AE (4.8) BS01 rna ? GO:0002181 ... P0CX35 36801861
    762006 7zrs:AF (4.8) BS01 rna ? GO:0000028 ... P26783 36801861
    762007 7zrs:AF (4.8) BS02 MG ? GO:0000028 ... P26783 36801861
    762008 7zrs:AG (4.8) BS01 rna ? GO:0000462 ... P0CX37 36801861
    762009 7zrs:AH (4.8) BS01 rna ? GO:0002181 ... P26786 36801861
    762010 7zrs:AI (4.8) BS01 rna ? GO:0000462 ... P0CX39 36801861
    762011 7zrs:AI (4.8) BS02 rna ? GO:0000462 ... P0CX39 36801861
    762012 7zrs:AJ (4.8) BS01 rna ? GO:0000462 ... O13516 36801861
    762013 7zrs:AK (4.8) BS01 rna ? N/A Q08745 36801861
    762014 7zrs:AL (4.8) BS01 rna ? GO:0000028 ... P0CX47 36801861
    762015 7zrs:AM (4.8) BS01 rna ? GO:0003735 ... P48589 36801861
    762016 7zrs:AN (4.8) BS01 rna ? GO:0000462 ... P05756 36801861
    762017 7zrs:AN (4.8) BS02 rna ? GO:0000462 ... P05756 36801861
    762018 7zrs:AO (4.8) BS01 rna ? GO:0000028 ... P39516 36801861
    762019 7zrs:AP (4.8) BS01 rna ? GO:0003723 ... Q01855 36801861
    762020 7zrs:AQ (4.8) BS01 rna ? GO:0000462 ... P0CX51 36801861
    762021 7zrs:AR (4.8) BS01 rna ? GO:0000028 ... P02407 36801861
    762022 7zrs:AS (4.8) BS01 rna ? GO:0000054 ... P0CX55 36801861
    762023 7zrs:AT (4.8) BS01 rna ? GO:0000028 ... P07280 36801861
    762024 7zrs:AU (4.8) BS01 rna ? GO:0003723 ... P38701 36801861
    762025 7zrs:AV (4.8) BS01 rna ? GO:0000447 ... P0C0V8 36801861
    762026 7zrs:AW (4.8) BS01 rna ? GO:0002181 ... P0C0W1 36801861
    762027 7zrs:AX (4.8) BS01 rna ? GO:0000462 ... P0CX29 36801861
    762028 7zrs:AY (4.8) BS01 rna ? GO:0000462 ... P0CX31 36801861
    762029 7zrs:AZ (4.8) BS01 rna ? N/A Q3E792 36801861
    762030 7zrs:AZ (4.8) BS02 rna ? N/A Q3E792 36801861
    762031 7zrs:Aa (4.8) BS01 rna ? GO:0003735 ... P39939 36801861
    762032 7zrs:Ab (4.8) BS01 rna ? GO:0000028 ... P35997 36801861
    762033 7zrs:Ac (4.8) BS01 rna ? GO:0000028 ... Q3E7X9 36801861
    762034 7zrs:Ad (4.8) BS01 rna ? GO:0002181 ... P41057 36801861
    762035 7zrs:Ad (4.8) BS02 ZN ? GO:0002181 ... P41057 36801861
    762036 7zrs:Ae (4.8) BS01 rna ? GO:0003735 ... P0CX33 36801861
    762037 7zrs:Af (4.8) BS01 rna ? GO:0003735 ... P05759 36801861
    762038 7zrs:Af (4.8) BS02 ZN ? GO:0003735 ... P05759 36801861
    762039 7zrs:Ag (4.8) BS01 rna ? GO:0001965 ... P38011 36801861
    762040 7zrs:BA (4.8) BS01 rna ? GO:0002181 ... P0CX45 36801861
    762041 7zrs:BA (4.8) BS02 rna ? GO:0002181 ... P0CX45 36801861
    762042 7zrs:BB (4.8) BS01 rna ? GO:0000027 ... P14126 36801861
    762043 7zrs:BC (4.8) BS01 rna ? GO:0002181 ... P10664 36801861
    762044 7zrs:BC (4.8) BS02 rna ? GO:0002181 ... P10664 36801861
    762045 7zrs:BD (4.8) BS01 rna ? GO:0000027 ... P26321 36801861
    762046 7zrs:BD (4.8) BS02 rna ? GO:0000027 ... P26321 36801861
    762047 7zrs:BE (4.8) BS01 rna ? GO:0000027 ... P05739 36801861
    762048 7zrs:BF (4.8) BS01 rna ? GO:0000463 ... P05737 36801861
    762049 7zrs:BF (4.8) BS02 rna ? GO:0000463 ... P05737 36801861
    762050 7zrs:BG (4.8) BS01 rna ? GO:0000470 ... P17076 36801861
    762051 7zrs:BG (4.8) BS02 rna ? GO:0000470 ... P17076 36801861
    762052 7zrs:BH (4.8) BS01 rna ? GO:0002181 ... P05738 36801861
    762053 7zrs:BI (4.8) BS01 rna ? GO:0000027 ... P41805 36801861
    762054 7zrs:BI (4.8) BS02 rna ? GO:0000027 ... P41805 36801861
    762055 7zrs:BJ (4.8) BS01 rna ? GO:0000027 ... Q3E757 36801861
    762056 7zrs:BJ (4.8) BS02 rna ? GO:0000027 ... Q3E757 36801861
    762057 7zrs:BK (4.8) BS01 rna ? GO:0002181 ... Q12690 36801861
    762058 7zrs:BK (4.8) BS02 rna ? GO:0002181 ... Q12690 36801861
    762059 7zrs:BL (4.8) BS01 rna ? GO:0000027 ... P36105 36801861
    762060 7zrs:BM (4.8) BS01 rna ? GO:0002181 ... P05748 36801861
    762061 7zrs:BM (4.8) BS02 rna ? GO:0002181 ... P05748 36801861
    762062 7zrs:BN (4.8) BS01 rna ? GO:0000470 ... P26784 36801861
    762063 7zrs:BO (4.8) BS01 rna ? GO:0000448 ... P05740 36801861
    762064 7zrs:BO (4.8) BS02 rna ? GO:0000448 ... P05740 36801861
    762065 7zrs:BP (4.8) BS01 rna ? GO:0002181 ... P0CX49 36801861
    762066 7zrs:BQ (4.8) BS01 rna ? GO:0002181 ... P0CX82 36801861
    762067 7zrs:BQ (4.8) BS02 rna ? GO:0002181 ... P0CX82 36801861
    762068 7zrs:BR (4.8) BS01 rna ? GO:0002181 ... P0CX23 36801861
    762069 7zrs:BR (4.8) BS02 rna ? GO:0002181 ... P0CX23 36801861
    762070 7zrs:BS (4.8) BS01 rna ? GO:0002181 ... Q02753 36801861
    762071 7zrs:BS (4.8) BS02 rna ? GO:0002181 ... Q02753 36801861
    762072 7zrs:BT (4.8) BS01 rna ? GO:0003735 ... P05749 36801861
    762073 7zrs:BU (4.8) BS01 rna ? GO:0002181 ... P0CX41 36801861
    762074 7zrs:BV (4.8) BS01 rna ? GO:0003735 ... P04449 36801861
    762075 7zrs:BW (4.8) BS01 rna ? GO:0003735 ... P04456 36801861
    762076 7zrs:BW (4.8) BS02 rna ? GO:0003735 ... P04456 36801861
    762077 7zrs:BX (4.8) BS01 rna ? GO:0002181 ... P05743 36801861
    762078 7zrs:BX (4.8) BS02 rna ? GO:0002181 ... P05743 36801861
    762079 7zrs:BY (4.8) BS01 rna ? GO:0002181 ... P0C2H6 36801861
    762080 7zrs:BZ (4.8) BS01 rna ? GO:0002181 ... P02406 36801861
    762081 7zrs:Ba (4.8) BS01 rna ? GO:0002181 ... P05747 36801861
    762082 7zrs:Bb (4.8) BS01 rna ? GO:0002181 ... P14120 36801861
    762083 7zrs:Bc (4.8) BS01 rna ? GO:0002181 ... P0C2H8 36801861
    762084 7zrs:Bd (4.8) BS01 rna ? GO:0002181 ... P38061 36801861
    762085 7zrs:Be (4.8) BS01 rna ? GO:0000027 ... P05744 36801861
    762086 7zrs:Bf (4.8) BS01 rna ? GO:0002181 ... P87262 36801861
    762087 7zrs:Bf (4.8) BS02 ZN ? GO:0002181 ... P87262 36801861
    762088 7zrs:Bg (4.8) BS01 rna ? GO:0000463 ... P0CX84 36801861
    762089 7zrs:Bg (4.8) BS02 rna ? GO:0000463 ... P0CX84 36801861
    762090 7zrs:Bh (4.8) BS01 rna ? GO:0002181 ... P05745 36801861
    762091 7zrs:Bi (4.8) BS01 rna ? GO:0000448 ... P49166 36801861
    762092 7zrs:Bi (4.8) BS02 rna ? GO:0000448 ... P49166 36801861
    762093 7zrs:Bi (4.8) BS03 ZN ? GO:0000448 ... P49166 36801861
    762094 7zrs:Bj (4.8) BS01 rna ? GO:0002181 ... P49167 36801861
    762095 7zrs:Bk (4.8) BS01 rna ? GO:0002181 ... P04650 36801861
    762096 7zrs:Bk (4.8) BS02 rna ? GO:0002181 ... P04650 36801861
    762097 7zrs:Bl (4.8) BS01 rna ? GO:0003735 ... P0CH08 36801861
    762098 7zrs:Bl (4.8) BS02 ZN ? GO:0003735 ... P0CH08 36801861
    762099 7zrs:Bn (4.8) BS01 rna ? GO:0002181 ... P0CX27 36801861
    762100 7zrs:Bn (4.8) BS02 rna ? GO:0002181 ... P0CX27 36801861
    762101 7zrs:Bn (4.8) BS03 ZN ? GO:0002181 ... P0CX27 36801861
    762102 7zrs:Bo (4.8) BS01 rna ? GO:0002181 ... P0CX25 36801861
    762103 7zrs:Bo (4.8) BS02 ZN ? GO:0002181 ... P0CX25 36801861
    762104 7zrs:CA (4.8) BS01 rna 3.6.4.13 GO:0002181 ... P53327 36801861
    762105 7zrs:CC (4.8) BS01 ZN ? GO:0005515 ... P36119 36801861
    762106 7zrs:CC (4.8) BS02 ZN ? GO:0005515 ... P36119 36801861
    762107 7zrt:A (1.8) BS01 peptide 3.4.21.73 GO:0004252 ... P00749 N/A
    762108 7zrw:A (1.96) BS01 HEC ? GO:0046872 ... G1UBD5 37100286
    762109 7zrw:B (1.96) BS01 HEC ? GO:0046872 ... G1UBD5 37100286
    762110 7zrx:A (2.04) BS01 HEC ? GO:0046872 ... G1UBD5 37100286
    762111 7zrx:B (2.04) BS01 HEC ? GO:0046872 ... G1UBD5 37100286
    762112 7zrx:B (2.04) BS02 ZN ? GO:0046872 ... G1UBD5 37100286
    762113 7zry:A (2.7) BS01 FAD 1.14.99.66 GO:0005634 ... O60341 35856020
    762114 7zrz:AP1 (3.09) BS01 rna 4.6.1.16 GO:0000213 ... Q9BSV6 37231152
    762115 7zrz:BP4 (3.09) BS01 rna 4.6.1.16 GO:0000213 ... Q8NCE0 37231152
    762116 7zrz:CP1 (3.09) BS01 rna ? N/A Q7Z6J9 37231152
    762117 7zs0:A (1.75) BS01 CA ? GO:0009055 ... Q1PZE6 39675707
    762118 7zs0:A (1.75) BS02 CA ? GO:0009055 ... Q1PZE6 39675707
    762119 7zs0:A (1.75) BS03 HEC ? GO:0009055 ... Q1PZE6 39675707
    762120 7zs0:A (1.75) BS04 HEC ? GO:0009055 ... Q1PZE6 39675707
    762121 7zs1:A (1.7) BS01 CA ? GO:0009055 ... Q1PZE6 39675707
    762122 7zs1:A (1.7) BS02 CA ? GO:0009055 ... Q1PZE6 39675707
    762123 7zs1:A (1.7) BS03 HEC ? GO:0009055 ... Q1PZE6 39675707
    762124 7zs1:A (1.7) BS04 HEC ? GO:0009055 ... Q1PZE6 39675707
    762125 7zs2:A (1.12) BS01 CA ? GO:0009055 ... Q1PZE6 39675707
    762126 7zs2:A (1.12) BS02 CA ? GO:0009055 ... Q1PZE6 39675707
    762127 7zs2:A (1.12) BS03 HEC ? GO:0009055 ... Q1PZE6 39675707
    762128 7zs2:A (1.12) BS04 HEC ? GO:0009055 ... Q1PZE6 39675707
    762129 7zs4:A (1.75) BS01 HEC ? GO:0046872 ... G1UBD5 37100286
    762130 7zs4:B (1.75) BS01 HEC ? GO:0046872 ... G1UBD5 37100286
    762131 7zs5:A (3.2) BS01 rna ? GO:0000054 ... Q12522 36801861
    762132 7zs5:BA (3.2) BS01 rna ? GO:0002181 ... P0CX27 36801861
    762133 7zs5:BB (3.2) BS01 rna ? GO:0002181 ... P0CX25 36801861
    762134 7zs5:BC (3.2) BS01 rna ? GO:0002181 ... P0CX45 36801861
    762135 7zs5:BD (3.2) BS01 rna ? GO:0000027 ... P14126 36801861
    762136 7zs5:BE (3.2) BS01 rna ? GO:0002181 ... P10664 36801861
    762137 7zs5:BE (3.2) BS02 rna ? GO:0002181 ... P10664 36801861
    762138 7zs5:BF (3.2) BS01 rna ? GO:0000027 ... P26321 36801861
    762139 7zs5:BF (3.2) BS02 rna ? GO:0000027 ... P26321 36801861
    762140 7zs5:BG (3.2) BS01 rna ? GO:0000027 ... Q02326 36801861
    762141 7zs5:BH (3.2) BS01 rna ? GO:0000463 ... P05737 36801861
    762142 7zs5:BH (3.2) BS02 rna ? GO:0000463 ... P05737 36801861
    762143 7zs5:BI (3.2) BS01 rna ? GO:0000470 ... P17076 36801861
    762144 7zs5:BI (3.2) BS02 rna ? GO:0000470 ... P17076 36801861
    762145 7zs5:BJ (3.2) BS01 rna ? GO:0002181 ... P05738 36801861
    762146 7zs5:BK (3.2) BS01 rna ? GO:0000027 ... P41805 36801861
    762147 7zs5:BK (3.2) BS02 rna ? GO:0000027 ... P41805 36801861
    762148 7zs5:BK (3.2) BS03 rna ? GO:0000027 ... P41805 36801861
    762149 7zs5:BL (3.2) BS01 rna ? GO:0000027 ... Q3E757 36801861
    762150 7zs5:BL (3.2) BS02 rna ? GO:0000027 ... Q3E757 36801861
    762151 7zs5:BM (3.2) BS01 rna ? GO:0002181 ... Q12690 36801861
    762152 7zs5:BM (3.2) BS02 rna ? GO:0002181 ... Q12690 36801861
    762153 7zs5:BN (3.2) BS01 rna ? GO:0000027 ... P36105 36801861
    762154 7zs5:BO (3.2) BS01 rna ? GO:0002181 ... P05748 36801861
    762155 7zs5:BO (3.2) BS02 rna ? GO:0002181 ... P05748 36801861
    762156 7zs5:BP (3.2) BS01 rna ? GO:0000470 ... P26784 36801861
    762157 7zs5:BQ (3.2) BS01 rna ? GO:0000448 ... P05740 36801861
    762158 7zs5:BQ (3.2) BS02 rna ? GO:0000448 ... P05740 36801861
    762159 7zs5:BR (3.2) BS01 rna ? GO:0002181 ... P0CX49 36801861
    762160 7zs5:BS (3.2) BS01 rna ? GO:0003723 ... P0CX82 36801861
    762161 7zs5:BT (3.2) BS01 rna ? GO:0002181 ... P0CX23 36801861
    762162 7zs5:BT (3.2) BS02 rna ? GO:0002181 ... P0CX23 36801861
    762163 7zs5:BU (3.2) BS01 rna ? GO:0002181 ... Q02753 36801861
    762164 7zs5:BU (3.2) BS02 rna ? GO:0002181 ... Q02753 36801861
    762165 7zs5:BV (3.2) BS01 rna ? GO:0003735 ... P05749 36801861
    762166 7zs5:BW (3.2) BS01 rna ? GO:0002181 ... P0CX41 36801861
    762167 7zs5:BX (3.2) BS01 rna ? GO:0003735 ... P04449 36801861
    762168 7zs5:BY (3.2) BS01 rna ? GO:0003735 ... P04456 36801861
    762169 7zs5:BY (3.2) BS02 rna ? GO:0003735 ... P04456 36801861
    762170 7zs5:BZ (3.2) BS01 rna ? GO:0002181 ... P05743 36801861
    762171 7zs5:BZ (3.2) BS02 rna ? GO:0002181 ... P05743 36801861
    762172 7zs5:Ba (3.2) BS01 rna ? GO:0002181 ... P0C2H6 36801861
    762173 7zs5:Bb (3.2) BS01 rna ? GO:0002181 ... P02406 36801861
    762174 7zs5:Bc (3.2) BS01 rna ? GO:0002181 ... P05747 36801861
    762175 7zs5:Bd (3.2) BS01 rna ? GO:0002181 ... P14120 36801861
    762176 7zs5:Be (3.2) BS01 rna ? GO:0002181 ... P0C2H8 36801861
    762177 7zs5:Bf (3.2) BS01 rna ? GO:0002181 ... P38061 36801861
    762178 7zs5:Bg (3.2) BS01 rna ? GO:0000027 ... P05744 36801861
    762179 7zs5:Bh (3.2) BS01 rna ? GO:0002181 ... P87262 36801861
    762180 7zs5:Bi (3.2) BS01 rna ? GO:0000463 ... P0CX84 36801861
    762181 7zs5:Bi (3.2) BS02 rna ? GO:0000463 ... P0CX84 36801861
    762182 7zs5:Bj (3.2) BS01 rna ? GO:0002181 ... P05745 36801861
    762183 7zs5:Bk (3.2) BS01 rna ? GO:0000448 ... P49166 36801861
    762184 7zs5:Bk (3.2) BS02 rna ? GO:0000448 ... P49166 36801861
    762185 7zs5:Bl (3.2) BS01 rna ? GO:0002181 ... P49167 36801861
    762186 7zs5:Bm (3.2) BS01 rna ? GO:0002181 ... P04650 36801861
    762187 7zs5:Bm (3.2) BS02 rna ? GO:0002181 ... P04650 36801861
    762188 7zs5:Bn (3.2) BS01 rna ? GO:0003735 ... P0CH08 36801861
    762189 7zs7:A (1.6) BS01 JQO 3.4.22.15 GO:0006508 ... P07711 38630165
    762190 7zs7:B (1.6) BS01 JQO 3.4.22.15 GO:0006508 ... P07711 38630165
    762191 7zs7:C (1.6) BS01 JQO 3.4.22.15 GO:0006508 ... P07711 38630165
    762192 7zs7:D (1.6) BS01 JQO 3.4.22.15 GO:0006508 ... P07711 38630165
    762193 7zs8:A (1.4) BS01 HEC 1.11.1.5 GO:0009055 ... A0A1D3HIT0 37047219
    762194 7zs8:A (1.4) BS02 HEC 1.11.1.5 GO:0009055 ... A0A1D3HIT0 37047219
    762195 7zs8:A (1.4) BS03 CA 1.11.1.5 GO:0009055 ... A0A1D3HIT0 37047219
    762196 7zs8:B (1.4) BS01 HEC 1.11.1.5 GO:0009055 ... A0A1D3HIT0 37047219
    762197 7zs8:B (1.4) BS02 HEC 1.11.1.5 GO:0009055 ... A0A1D3HIT0 37047219
    762198 7zs8:B (1.4) BS03 CA 1.11.1.5 GO:0009055 ... A0A1D3HIT0 37047219
    762199 7zs9:0 (3.1) BS01 SF4 3.6.4.12 GO:0000019 ... P06839 36411341
    762200 7zs9:3 (3.1) BS01 ZN ? GO:0000993 ... Q03290 36411341

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).