SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    764201 8a3d:n (1.67) BS02 rna ? GO:0000470 ... P62424 36909531
    764202 8a3d:o (1.67) BS01 rna ? GO:0002181 ... P32969 36909531
    764203 8a3d:p (1.67) BS01 rna ? GO:0000122 ... P27635 36909531
    764204 8a3d:p (1.67) BS02 rna ? GO:0000122 ... P27635 36909531
    764205 8a3d:q (1.67) BS01 rna ? GO:0000027 ... P62913 36909531
    764206 8a3d:q (1.67) BS02 rna ? GO:0000027 ... P62913 36909531
    764207 8a3d:r (1.67) BS01 rna ? GO:0001824 ... P26373 36909531
    764208 8a3d:r (1.67) BS02 rna ? GO:0001824 ... P26373 36909531
    764209 8a3d:s (1.67) BS01 rna ? GO:0003723 ... P50914 36909531
    764210 8a3f:AAA (3.15) BS01 PYC 5.1.1.4 GO:0003824 ... E3PTZ4 N/A
    764211 8a3f:BBB (3.15) BS01 PYC 5.1.1.4 GO:0003824 ... E3PTZ4 N/A
    764212 8a3h:A (0.97) BS01 IDC 3.2.1.4 GO:0000272 ... O85465 N/A MOAD: Ki=88uM
    764213 8a3l:0 (3.42) BS01 rna ? GO:0000027 ... P0A7N9 36840711
    764214 8a3l:1 (3.42) BS01 rna ? GO:0002181 ... P0A7P5 36840711
    764215 8a3l:2 (3.42) BS01 rna ? GO:0002181 ... P0A7Q1 36840711
    764216 8a3l:3 (3.42) BS01 rna ? GO:0002181 ... P0A7Q6 36840711
    764217 8a3l:3 (3.42) BS02 ZN ? GO:0002181 ... P0A7Q6 36840711
    764218 8a3l:4 (3.42) BS01 rna ? GO:0002181 ... P0A7M9 36840711
    764219 8a3l:4 (3.42) BS02 rna ? GO:0002181 ... P0A7M9 36840711
    764220 8a3l:4 (3.42) BS03 ZN ? GO:0002181 ... P0A7M9 36840711
    764221 8a3l:B (3.42) BS01 rna ? GO:0000028 ... P0A7V0 36840711
    764222 8a3l:C (3.42) BS01 rna ? GO:0003676 ... P0A7V3 36840711
    764223 8a3l:D (3.42) BS01 rna ? GO:0000028 ... P0A7V8 36840711
    764224 8a3l:E (3.42) BS01 rna ? GO:0000028 ... P0A7W1 36840711
    764225 8a3l:F (3.42) BS01 rna ? GO:0002181 ... P02358 36840711
    764226 8a3l:G (3.42) BS01 rna ? GO:0000028 ... P02359 36840711
    764227 8a3l:G (3.42) BS02 rna ? GO:0000028 ... P02359 36840711
    764228 8a3l:H (3.42) BS01 rna ? GO:0000028 ... P0A7W7 36840711
    764229 8a3l:I (3.42) BS01 rna ? GO:0000049 ... P0A7X3 36840711
    764230 8a3l:I (3.42) BS02 rna ? GO:0000049 ... P0A7X3 36840711
    764231 8a3l:J (3.42) BS01 rna ? GO:0000049 ... P0A7R5 36840711
    764232 8a3l:K (3.42) BS01 rna ? GO:0002181 ... P0A7R9 36840711
    764233 8a3l:L (3.42) BS01 rna ? GO:0000049 ... P0A7S3 36840711
    764234 8a3l:M (3.42) BS01 rna ? GO:0000049 ... P0A7S9 36840711
    764235 8a3l:M (3.42) BS02 rna ? GO:0000049 ... P0A7S9 36840711
    764236 8a3l:N (3.42) BS01 rna ? GO:0000028 ... P0AG59 36840711
    764237 8a3l:O (3.42) BS01 rna ? GO:0000028 ... P0ADZ4 36840711
    764238 8a3l:O (3.42) BS02 rna ? GO:0000028 ... P0ADZ4 36840711
    764239 8a3l:P (3.42) BS01 rna ? GO:0000028 ... P0A7T3 36840711
    764240 8a3l:Q (3.42) BS01 rna ? GO:0000028 ... P0AG63 36840711
    764241 8a3l:R (3.42) BS01 rna ? GO:0002181 ... P0A7T7 36840711
    764242 8a3l:S (3.42) BS01 rna ? GO:0000028 ... P0A7U3 36840711
    764243 8a3l:T (3.42) BS01 rna ? GO:0000028 ... P0A7U7 36840711
    764244 8a3l:U (3.42) BS01 rna ? GO:0000028 ... P68679 36840711
    764245 8a3l:Y (3.42) BS01 rna ? GO:0000028 ... P0AG67 36840711
    764246 8a3l:c (3.42) BS01 rna ? GO:0000027 ... P60422 36840711
    764247 8a3l:c (3.42) BS02 MG ? GO:0000027 ... P60422 36840711
    764248 8a3l:c (3.42) BS03 MG ? GO:0000027 ... P60422 36840711
    764249 8a3l:d (3.42) BS01 rna ? GO:0000027 ... P60438 36840711
    764250 8a3l:e (3.42) BS01 rna ? GO:0001070 ... P60723 36840711
    764251 8a3l:f (3.42) BS01 rna ? GO:0000027 ... P62399 36840711
    764252 8a3l:f (3.42) BS02 rna ? GO:0000027 ... P62399 36840711
    764253 8a3l:f (3.42) BS03 rna ? GO:0000027 ... P62399 36840711
    764254 8a3l:g (3.42) BS01 rna ? GO:0000027 ... P0AG55 36840711
    764255 8a3l:h (3.42) BS01 rna ? GO:0002181 ... P0A7R1 36840711
    764256 8a3l:i (3.42) BS01 rna ? GO:0002181 ... P0AA10 36840711
    764257 8a3l:j (3.42) BS01 rna ? GO:0002181 ... P0ADY3 36840711
    764258 8a3l:j (3.42) BS02 rna ? GO:0002181 ... P0ADY3 36840711
    764259 8a3l:k (3.42) BS01 rna ? GO:0002181 ... P02413 36840711
    764260 8a3l:l (3.42) BS01 rna ? GO:0000027 ... P0ADY7 36840711
    764261 8a3l:l (3.42) BS02 rna ? GO:0000027 ... P0ADY7 36840711
    764262 8a3l:m (3.42) BS01 rna ? GO:0000027 ... P0AG44 36840711
    764263 8a3l:n (3.42) BS01 rna ? GO:0002181 ... P0C018 36840711
    764264 8a3l:n (3.42) BS02 rna ? GO:0002181 ... P0C018 36840711
    764265 8a3l:o (3.42) BS01 rna ? GO:0000027 ... P0A7K6 36840711
    764266 8a3l:o (3.42) BS02 rna ? GO:0000027 ... P0A7K6 36840711
    764267 8a3l:p (3.42) BS01 rna ? GO:0000027 ... P0A7L3 36840711
    764268 8a3l:q (3.42) BS01 rna ? GO:0002181 ... P0AG48 36840711
    764269 8a3l:r (3.42) BS01 rna ? GO:0002181 ... P61175 36840711
    764270 8a3l:s (3.42) BS01 rna ? GO:0000027 ... P0ADZ0 36840711
    764271 8a3l:t (3.42) BS01 rna ? GO:0000027 ... P60624 36840711
    764272 8a3l:u (3.42) BS01 rna ? GO:0000027 ... P68919 36840711
    764273 8a3l:v (3.42) BS01 rna ? GO:0000027 ... P0A7L8 36840711
    764274 8a3l:v (3.42) BS02 rna ? GO:0000027 ... P0A7L8 36840711
    764275 8a3l:w (3.42) BS01 rna ? GO:0000027 ... P0A7M2 36840711
    764276 8a3l:w (3.42) BS02 rna ? GO:0000027 ... P0A7M2 36840711
    764277 8a3l:x (3.42) BS01 rna ? GO:0000027 ... P0A7M6 36840711
    764278 8a3l:y (3.42) BS01 rna ? GO:0000027 ... P0AG51 36840711
    764279 8a3l:y (3.42) BS02 rna ? GO:0000027 ... P0AG51 36840711
    764280 8a3l:z (3.42) BS01 rna ? GO:0000027 ... P0A7N4 36840711
    764281 8a3n:A (2.0) BS01 NAP 1.3.1.36 GO:0008270 ... W8JWW7 36198083
    764282 8a3n:A (2.0) BS02 ZN 1.3.1.36 GO:0008270 ... W8JWW7 36198083
    764283 8a3n:A (2.0) BS03 ZN 1.3.1.36 GO:0008270 ... W8JWW7 36198083
    764284 8a3n:B (2.0) BS01 NAP 1.3.1.36 GO:0008270 ... W8JWW7 36198083
    764285 8a3n:B (2.0) BS02 ZN 1.3.1.36 GO:0008270 ... W8JWW7 36198083
    764286 8a3n:B (2.0) BS03 ZN 1.3.1.36 GO:0008270 ... W8JWW7 36198083
    764287 8a3t:A (3.5) BS01 peptide ? GO:0005515 ... P53068 N/A
    764288 8a3t:B (3.5) BS01 peptide ? GO:0005515 ... P53197 N/A
    764289 8a3t:U (3.5) BS01 ZN 6.3.2.- GO:0005634 ... Q12157 N/A
    764290 8a3t:U (3.5) BS02 ZN 6.3.2.- GO:0005634 ... Q12157 N/A
    764291 8a3t:U (3.5) BS03 ZN 6.3.2.- GO:0005634 ... Q12157 N/A
    764292 8a3u:A (2.33) BS01 ATP 2.7.13.3 GO:0000155 ... P23222
    Q88JB0    		 N/A
    764293 8a3u:A (2.33) BS02 FMN 2.7.13.3 GO:0000155 ... P23222
    Q88JB0    		 N/A
    764294 8a3v:A (2.9) BS01 ADP 3.6.4.12 GO:0003677 ... A0A085R2T8 36762863
    764295 8a3v:A (2.9) BS02 MG 3.6.4.12 GO:0003677 ... A0A085R2T8 36762863
    764296 8a3v:B (2.9) BS01 ADP 3.6.4.12 GO:0003677 ... A0A085R2T8 36762863
    764297 8a3v:B (2.9) BS02 ADP 3.6.4.12 GO:0003677 ... A0A085R2T8 36762863
    764298 8a3v:B (2.9) BS03 MG 3.6.4.12 GO:0003677 ... A0A085R2T8 36762863
    764299 8a3w:A (2.89) BS01 rna ? GO:0002181 ... Q4FWX5 N/A
    764300 8a3w:A (2.89) BS02 rna ? GO:0002181 ... Q4FWX5 N/A
    764301 8a3w:A (2.89) BS03 rna ? GO:0002181 ... Q4FWX5 N/A
    764302 8a3w:A (2.89) BS04 rna ? GO:0002181 ... Q4FWX5 N/A
    764303 8a3w:B (2.89) BS01 rna ? GO:0003723 ... Q4Q2Q6 N/A
    764304 8a3w:B (2.89) BS02 rna ? GO:0003723 ... Q4Q2Q6 N/A
    764305 8a3w:B (2.89) BS03 rna ? GO:0003723 ... Q4Q2Q6 N/A
    764306 8a3w:C (2.89) BS01 rna ? GO:0003723 ... E9ADW5 N/A
    764307 8a3w:C (2.89) BS02 rna ? GO:0003723 ... E9ADW5 N/A
    764308 8a3w:D (2.89) BS01 rna ? GO:0003723 ... P48157 N/A
    764309 8a3w:D (2.89) BS02 rna ? GO:0003723 ... P48157 N/A
    764310 8a3w:E (2.89) BS01 rna ? GO:0002181 ... Q4QC91 N/A
    764311 8a3w:E (2.89) BS02 rna ? GO:0002181 ... Q4QC91 N/A
    764312 8a3w:F (2.89) BS01 rna ? GO:0002181 ... Q4Q4D3 N/A
    764313 8a3w:F (2.89) BS02 rna ? GO:0002181 ... Q4Q4D3 N/A
    764314 8a3w:G (2.89) BS01 rna ? GO:0000470 ... Q4QIP1 N/A
    764315 8a3w:G (2.89) BS02 rna ? GO:0000470 ... Q4QIP1 N/A
    764316 8a3w:G (2.89) BS03 rna ? GO:0000470 ... Q4QIP1 N/A
    764317 8a3w:H (2.89) BS01 rna ? GO:0003729 ... Q4QFG2 N/A
    764318 8a3w:H (2.89) BS02 rna ? GO:0003729 ... Q4QFG2 N/A
    764319 8a3w:H (2.89) BS03 rna ? GO:0003729 ... Q4QFG2 N/A
    764320 8a3w:H (2.89) BS04 rna ? GO:0003729 ... Q4QFG2 N/A
    764321 8a3w:I (2.89) BS01 rna ? GO:0003723 ... E9AEA8 N/A
    764322 8a3w:I (2.89) BS02 rna ? GO:0003723 ... E9AEA8 N/A
    764323 8a3w:J (2.89) BS01 rna ? GO:0003735 ... E9AFK3 N/A
    764324 8a3w:J (2.89) BS02 rna ? GO:0003735 ... E9AFK3 N/A
    764325 8a3w:K (2.89) BS01 rna ? GO:0003723 ... Q4QBJ1 N/A
    764326 8a3w:K (2.89) BS02 rna ? GO:0003723 ... Q4QBJ1 N/A
    764327 8a3w:L (2.89) BS01 rna ? GO:0003735 ... E9AFK0 N/A
    764328 8a3w:L (2.89) BS02 rna ? GO:0003735 ... E9AFK0 N/A
    764329 8a3w:M (2.89) BS01 rna ? GO:0002181 ... Q4Q6S3 N/A
    764330 8a3w:M (2.89) BS02 rna ? GO:0002181 ... Q4Q6S3 N/A
    764331 8a3w:M (2.89) BS03 rna ? GO:0002181 ... Q4Q6S3 N/A
    764332 8a3w:O (2.89) BS01 rna ? GO:0000027 ... E9AF09 N/A
    764333 8a3w:O (2.89) BS02 rna ? GO:0000027 ... E9AF09 N/A
    764334 8a3w:O (2.89) BS03 rna ? GO:0000027 ... E9AF09 N/A
    764335 8a3w:P (2.89) BS01 rna ? GO:0003723 ... Q4QG98 N/A
    764336 8a3w:P (2.89) BS02 rna ? GO:0003723 ... Q4QG98 N/A
    764337 8a3w:Q (2.89) BS01 rna ? GO:0003723 ... Q4QJ37 N/A
    764338 8a3w:Q (2.89) BS02 rna ? GO:0003723 ... Q4QJ37 N/A
    764339 8a3w:Q (2.89) BS03 rna ? GO:0003723 ... Q4QJ37 N/A
    764340 8a3w:Q (2.89) BS04 rna ? GO:0003723 ... Q4QJ37 N/A
    764341 8a3w:R (2.89) BS01 rna ? GO:0002181 ... Q4Q5J4 N/A
    764342 8a3w:R (2.89) BS02 rna ? GO:0002181 ... Q4Q5J4 N/A
    764343 8a3w:R (2.89) BS03 rna ? GO:0002181 ... Q4Q5J4 N/A
    764344 8a3w:S (2.89) BS01 rna ? GO:0003735 ... Q4QEX4 N/A
    764345 8a3w:S (2.89) BS02 rna ? GO:0003735 ... Q4QEX4 N/A
    764346 8a3w:S (2.89) BS03 rna ? GO:0003735 ... Q4QEX4 N/A
    764347 8a3w:SA (2.89) BS01 rna ? GO:0003735 ... Q4FX73 N/A
    764348 8a3w:SB (2.89) BS01 rna ? GO:0000028 ... Q4Q0Q0 N/A
    764349 8a3w:SC (2.89) BS01 rna ? GO:0003723 ... Q4Q4A0 N/A
    764350 8a3w:SD (2.89) BS01 rna ? GO:0003723 ... Q4QIM3 N/A
    764351 8a3w:SE (2.89) BS01 rna ? GO:0003723 ... Q4QG31 N/A
    764352 8a3w:SF (2.89) BS01 rna ? GO:0003723 ... Q4QDL5 N/A
    764353 8a3w:SG (2.89) BS01 rna ? GO:0003735 ... Q9NE83 N/A
    764354 8a3w:SH (2.89) BS01 rna ? GO:0000028 ... Q868B1 N/A
    764355 8a3w:SI (2.89) BS01 rna ? GO:0003735 ... E9AC32 N/A
    764356 8a3w:SJ (2.89) BS01 rna ? GO:0003735 ... Q4QGW3 N/A
    764357 8a3w:SK (2.89) BS01 rna ? GO:0000462 ... P25204 N/A
    764358 8a3w:SK (2.89) BS02 rna ? GO:0000462 ... P25204 N/A
    764359 8a3w:SL (2.89) BS01 rna ? GO:0000462 ... Q4Q9A5 N/A
    764360 8a3w:SM (2.89) BS01 rna ? GO:0003735 ... Q4Q8G4 N/A
    764361 8a3w:SN (2.89) BS01 rna ? GO:0003723 ... Q4Q1X7 N/A
    764362 8a3w:SO (2.89) BS01 rna ? GO:0000028 ... Q4Q8H1 N/A
    764363 8a3w:SP (2.89) BS01 rna ? GO:0003735 ... Q4QC89 N/A
    764364 8a3w:SR (2.89) BS01 rna ? GO:0003676 ... Q4Q1Y2 N/A
    764365 8a3w:SS (2.89) BS01 rna ? GO:0002181 ... Q4Q817 N/A
    764366 8a3w:SS (2.89) BS02 ZN ? GO:0002181 ... Q4Q817 N/A
    764367 8a3w:ST (2.89) BS01 rna ? GO:0003735 ... Q4Q3M1 N/A
    764368 8a3w:SU (2.89) BS01 rna N/A GO:0003735 ... N/A N/A
    764369 8a3w:SV (2.89) BS01 rna ? GO:0003735 ... Q4Q806 N/A
    764370 8a3w:SW (2.89) BS01 rna ? GO:0000028 ... Q4QBV0 N/A
    764371 8a3w:SX (2.89) BS01 rna ? GO:0000028 ... E9AEE8 N/A
    764372 8a3w:SZ (2.89) BS01 rna ? GO:0003735 ... Q4Q1D2 N/A
    764373 8a3w:Sa (2.89) BS01 rna ? GO:0003735 ... Q4Q9X4 N/A
    764374 8a3w:Sb (2.89) BS01 rna ? GO:0003729 ... Q4Q8L6 N/A
    764375 8a3w:Sb (2.89) BS02 ZN ? GO:0003729 ... Q4Q8L6 N/A
    764376 8a3w:Sc (2.89) BS01 rna ? GO:0000028 ... Q4Q140 N/A
    764377 8a3w:Sd (2.89) BS01 rna ? GO:0000028 ... Q4Q931 N/A
    764378 8a3w:Se (2.89) BS01 rna ? GO:0003735 ... Q4Q7P0 N/A
    764379 8a3w:Sh (2.89) BS01 rna ? GO:0003676 ... Q4Q5K7 N/A
    764380 8a3w:T (2.89) BS01 rna ? GO:0002181 ... Q4QAX6 N/A
    764381 8a3w:T (2.89) BS02 rna ? GO:0002181 ... Q4QAX6 N/A
    764382 8a3w:T (2.89) BS03 rna ? GO:0002181 ... Q4QAX6 N/A
    764383 8a3w:T (2.89) BS04 rna ? GO:0002181 ... Q4QAX6 N/A
    764384 8a3w:U (2.89) BS01 rna ? GO:0002181 ... Q4Q0X2 N/A
    764385 8a3w:U (2.89) BS02 rna ? GO:0002181 ... Q4Q0X2 N/A
    764386 8a3w:U (2.89) BS03 rna ? GO:0002181 ... Q4Q0X2 N/A
    764387 8a3w:V (2.89) BS01 rna ? GO:0003735 ... Q4QJ20 N/A
    764388 8a3w:V (2.89) BS02 rna ? GO:0003735 ... Q4QJ20 N/A
    764389 8a3w:V (2.89) BS03 rna ? GO:0003735 ... Q4QJ20 N/A
    764390 8a3w:W (2.89) BS01 rna ? GO:0002181 ... Q4QAC5 N/A
    764391 8a3w:W (2.89) BS02 rna ? GO:0002181 ... Q4QAC5 N/A
    764392 8a3w:X (2.89) BS01 rna ? GO:0002181 ... Q4Q1W6 N/A
    764393 8a3w:X (2.89) BS02 rna ? GO:0002181 ... Q4Q1W6 N/A
    764394 8a3w:Y (2.89) BS01 rna ? GO:0003735 ... Q4Q504 N/A
    764395 8a3w:Y (2.89) BS02 rna ? GO:0003735 ... Q4Q504 N/A
    764396 8a3w:Z (2.89) BS01 rna ? GO:0003735 ... Q4QGW7 N/A
    764397 8a3w:a (2.89) BS01 rna ? GO:0000463 ... Q4Q8V7 N/A
    764398 8a3w:a (2.89) BS02 rna ? GO:0000463 ... Q4Q8V7 N/A
    764399 8a3w:b (2.89) BS01 rna ? GO:0002181 ... Q4Q178 N/A
    764400 8a3w:c (2.89) BS01 rna ? GO:0000463 ... Q4Q9H4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).