SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    764401 8a3w:c (2.89) BS02 rna ? GO:0000463 ... Q4Q9H4 N/A
    764402 8a3w:d (2.89) BS01 rna ? GO:0003723 ... E9AEK1 N/A
    764403 8a3w:e (2.89) BS01 rna ? GO:0002181 ... E9AFF2 N/A
    764404 8a3w:e (2.89) BS02 rna ? GO:0002181 ... E9AFF2 N/A
    764405 8a3w:e (2.89) BS03 rna ? GO:0002181 ... E9AFF2 N/A
    764406 8a3w:e (2.89) BS04 rna ? GO:0002181 ... E9AFF2 N/A
    764407 8a3w:f (2.89) BS01 rna ? GO:0003735 ... Q4QC11 N/A
    764408 8a3w:f (2.89) BS02 MG ? GO:0003735 ... Q4QC11 N/A
    764409 8a3w:g (2.89) BS01 rna ? GO:0002181 ... Q4QHL3 N/A
    764410 8a3w:g (2.89) BS02 rna ? GO:0002181 ... Q4QHL3 N/A
    764411 8a3w:h (2.89) BS01 rna ? GO:0003735 ... Q4QDP9 N/A
    764412 8a3w:h (2.89) BS02 rna ? GO:0003735 ... Q4QDP9 N/A
    764413 8a3w:h (2.89) BS03 rna ? GO:0003735 ... Q4QDP9 N/A
    764414 8a3w:i (2.89) BS01 rna ? GO:0002181 ... Q4QCE1 N/A
    764415 8a3w:i (2.89) BS02 rna ? GO:0002181 ... Q4QCE1 N/A
    764416 8a3w:j (2.89) BS01 rna ? GO:0003723 ... E9AEH2 N/A
    764417 8a3w:j (2.89) BS02 rna ? GO:0003723 ... E9AEH2 N/A
    764418 8a3w:j (2.89) BS03 rna ? GO:0003723 ... E9AEH2 N/A
    764419 8a3w:j (2.89) BS04 ZN ? GO:0003723 ... E9AEH2 N/A
    764420 8a3w:k (2.89) BS01 rna ? GO:0003735 ... Q4Q8X0 N/A
    764421 8a3w:k (2.89) BS02 rna ? GO:0003735 ... Q4Q8X0 N/A
    764422 8a3w:k (2.89) BS03 rna ? GO:0003735 ... Q4Q8X0 N/A
    764423 8a3w:l (2.89) BS01 rna ? GO:0003735 ... Q4QEQ0 N/A
    764424 8a3w:l (2.89) BS02 rna ? GO:0003735 ... Q4QEQ0 N/A
    764425 8a3w:l (2.89) BS03 rna ? GO:0003735 ... Q4QEQ0 N/A
    764426 8a3w:o (2.89) BS01 rna ? GO:0003735 ... Q4QC01 N/A
    764427 8a3w:o (2.89) BS02 rna ? GO:0003735 ... Q4QC01 N/A
    764428 8a3w:o (2.89) BS03 rna ? GO:0003735 ... Q4QC01 N/A
    764429 8a3w:o (2.89) BS04 ZN ? GO:0003735 ... Q4QC01 N/A
    764430 8a3w:p (2.89) BS01 rna ? GO:0003735 ... Q4Q3L3 N/A
    764431 8a3w:p (2.89) BS02 rna ? GO:0003735 ... Q4Q3L3 N/A
    764432 8a3w:p (2.89) BS03 rna ? GO:0003735 ... Q4Q3L3 N/A
    764433 8a3x:A (2.58) BS01 NAP ? GO:0000166 ... A0A0L8BGL4 36776386
    764434 8a3x:A (2.58) BS02 NAP ? GO:0000166 ... A0A0L8BGL4 36776386
    764435 8a3x:B (2.58) BS01 NAP ? GO:0000166 ... A0A0L8BGL4 36776386
    764436 8a3x:C (2.58) BS01 NAP ? GO:0000166 ... A0A0L8BGL4 36776386
    764437 8a3x:C (2.58) BS02 NAP ? GO:0000166 ... A0A0L8BGL4 36776386
    764438 8a3x:D (2.58) BS01 NAP ? GO:0000166 ... A0A0L8BGL4 36776386
    764439 8a3y:A (3.3) BS01 dna N/A GO:0000428 ... A0A7M4DUC2 35858621
    764440 8a3y:A (3.3) BS02 rna N/A GO:0000428 ... A0A7M4DUC2 35858621
    764441 8a3y:A (3.3) BS03 dna N/A GO:0000428 ... A0A7M4DUC2 35858621
    764442 8a3y:A (3.3) BS04 ZN N/A GO:0000428 ... A0A7M4DUC2 35858621
    764443 8a3y:A (3.3) BS05 MG N/A GO:0000428 ... A0A7M4DUC2 35858621
    764444 8a3y:B (3.3) BS01 dna N/A GO:0000428 ... I3LGP4 35858621
    764445 8a3y:B (3.3) BS02 rna N/A GO:0000428 ... I3LGP4 35858621
    764446 8a3y:B (3.3) BS03 dna N/A GO:0000428 ... I3LGP4 35858621
    764447 8a3y:C (3.3) BS01 ZN N/A GO:0000428 ... I3LCH3 35858621
    764448 8a3y:E (3.3) BS01 dna N/A GO:0001054 ... I3LSI7 35858621
    764449 8a3y:I (3.3) BS01 ZN N/A GO:0000428 ... P60899 35858621
    764450 8a3y:I (3.3) BS02 ZN N/A GO:0000428 ... P60899 35858621
    764451 8a3y:J (3.3) BS01 ZN N/A GO:0000428 ... A0A4X1VYD0 35858621
    764452 8a3y:L (3.3) BS01 ZN N/A GO:0003677 ... A0A8D0JYF1 35858621
    764453 8a3y:Y (3.3) BS01 ZN N/A GO:0000122 ... P63272 35858621
    764454 8a3y:a (3.3) BS01 dna N/A GO:0000786 ... P84233 35858621
    764455 8a3y:a (3.3) BS02 dna N/A GO:0000786 ... P84233 35858621
    764456 8a3y:b (3.3) BS01 dna N/A GO:0000786 ... P62799 35858621
    764457 8a3y:b (3.3) BS02 dna N/A GO:0000786 ... P62799 35858621
    764458 8a3y:c (3.3) BS01 dna N/A GO:0000786 ... Q6AZJ8 35858621
    764459 8a3y:c (3.3) BS02 dna N/A GO:0000786 ... Q6AZJ8 35858621
    764460 8a3y:d (3.3) BS01 dna N/A GO:0000786 ... A0A8J1LZU9 35858621
    764461 8a3y:d (3.3) BS02 dna N/A GO:0000786 ... A0A8J1LZU9 35858621
    764462 8a3y:e (3.3) BS01 dna N/A GO:0000786 ... P84233 35858621
    764463 8a3y:e (3.3) BS02 dna N/A GO:0000786 ... P84233 35858621
    764464 8a3y:f (3.3) BS01 dna N/A GO:0000786 ... P62799 35858621
    764465 8a3y:f (3.3) BS02 dna N/A GO:0000786 ... P62799 35858621
    764466 8a40:A (3.0) BS01 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 35858621
    764467 8a40:A (3.0) BS02 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 35858621
    764468 8a40:A (3.0) BS03 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 35858621
    764469 8a40:A (3.0) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 35858621
    764470 8a40:A (3.0) BS05 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 35858621
    764471 8a40:A (3.0) BS06 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 35858621
    764472 8a40:A (3.0) BS07 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 35858621
    764473 8a40:B (3.0) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 35858621
    764474 8a40:B (3.0) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 35858621
    764475 8a40:B (3.0) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 35858621
    764476 8a40:B (3.0) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 35858621
    764477 8a40:E (3.0) BS01 dna ? GO:0001054 ... I3LSI7 35858621
    764478 8a40:I (3.0) BS01 ZN ? GO:0000428 ... P60899 35858621
    764479 8a40:I (3.0) BS02 ZN ? GO:0000428 ... P60899 35858621
    764480 8a40:I (3.0) BS03 ZN ? GO:0000428 ... P60899 35858621
    764481 8a42:A (1.5) BS01 peptide ? GO:0043190 ... P18791 38838057
    764482 8a44:A (2.49) BS01 peptide ? GO:0016020 ... A5KDR7 37336887
    764483 8a45:A (2.0) BS01 HTL 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764484 8a45:A (2.0) BS02 MG 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764485 8a45:A (2.0) BS03 CA 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764486 8a45:A (2.0) BS04 CA 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764487 8a45:B (2.0) BS01 HTL 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764488 8a45:B (2.0) BS02 MG 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764489 8a45:C (2.0) BS01 HTL 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764490 8a45:C (2.0) BS02 MG 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764491 8a45:D (2.0) BS01 HTL 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764492 8a45:D (2.0) BS02 MG 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764493 8a45:D (2.0) BS03 CA 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764494 8a45:D (2.0) BS04 CA 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764495 8a45:D (2.0) BS05 CA 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764496 8a45:E (2.0) BS01 HTL 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764497 8a45:E (2.0) BS02 MG 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764498 8a45:E (2.0) BS03 CA 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764499 8a45:F (2.0) BS01 HTL 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764500 8a45:F (2.0) BS02 MG 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764501 8a45:F (2.0) BS03 CA 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764502 8a45:F (2.0) BS04 CA 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764503 8a45:F (2.0) BS05 CA 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764504 8a46:A (1.323) BS01 L5F ? N/A Q9Z2X8 36866391
    764505 8a47:B (2.338) BS01 BMA N/A N/A N/A 36528711
    764506 8a47:C (2.338) BS01 MAN ? GO:0006508 ... A0A8B6IYA1 36528711
    764507 8a48:A (3.044) BS01 BMA N/A N/A N/A 36528711
    764508 8a49:C (3.45) BS01 BMA 3.2.1.96 GO:0005509 ... Q99Y92 36528711
    764509 8a49:C (3.45) BS02 MAN 3.2.1.96 GO:0005509 ... Q99Y92 36528711
    764510 8a49:C (3.45) BS03 MAN 3.2.1.96 GO:0005509 ... Q99Y92 36528711
    764511 8a49:C (3.45) BS04 FUC 3.2.1.96 GO:0005509 ... Q99Y92 36528711
    764512 8a4a:B (2.52) BS01 GNP ? GO:0003924 ... P10949 35871249
    764513 8a4a:B (2.52) BS02 MG ? GO:0003924 ... P10949 35871249
    764514 8a4b:B (2.8) BS01 GTP ? GO:0003924 ... P20337 35871249
    764515 8a4b:B (2.8) BS02 MG ? GO:0003924 ... P20337 35871249
    764516 8a4b:D (2.8) BS01 GTP ? GO:0003924 ... P20337 35871249
    764517 8a4b:D (2.8) BS02 MG ? GO:0003924 ... P20337 35871249
    764518 8a4c:B (2.75) BS01 GNP ? GO:0003924 ... P20337 35871249
    764519 8a4c:B (2.75) BS02 MG ? GO:0003924 ... P20337 35871249
    764520 8a4c:D (2.75) BS01 GNP ? GO:0003924 ... P20337 35871249
    764521 8a4c:D (2.75) BS02 MG ? GO:0003924 ... P20337 35871249
    764522 8a4d:A (2.2) BS01 26G 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764523 8a4d:A (2.2) BS02 MG 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764524 8a4d:A (2.2) BS03 MG 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764525 8a4d:B (2.2) BS01 26G 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764526 8a4d:B (2.2) BS02 MG 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764527 8a4d:C (2.2) BS01 26G 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764528 8a4d:C (2.2) BS02 MG 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764529 8a4d:D (2.2) BS01 26G 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764530 8a4d:D (2.2) BS02 MG 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764531 8a4d:E (2.2) BS01 26G 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764532 8a4d:E (2.2) BS02 MG 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764533 8a4d:E (2.2) BS03 MG 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764534 8a4d:F (2.2) BS01 26G 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764535 8a4d:F (2.2) BS02 MG 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764536 8a4d:F (2.2) BS03 MG 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764537 8a4d:F (2.2) BS04 MG 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764538 8a4d:F (2.2) BS05 CA 2.2.1.7 GO:0008661 ... B7V7R4 37567475
    764539 8a4e:A (1.96) BS01 FMA 2.7.11.1 N/A P93025 36381146
    764540 8a4e:A (1.96) BS02 FMN 2.7.11.1 N/A P93025 36381146
    764541 8a4g:A (1.97) BS01 ACV 1.21.3.1 GO:0005506 ... P05326 N/A
    764542 8a4i:I (2.76) BS01 dna ? N/A Q8BX22 36635047
    764543 8a4i:I (2.76) BS02 dna ? N/A Q8BX22 36635047
    764544 8a4i:I (2.76) BS03 ZN ? N/A Q8BX22 36635047
    764545 8a4i:I (2.76) BS04 ZN ? N/A Q8BX22 36635047
    764546 8a4i:J (2.76) BS01 dna ? N/A Q8BX22 36635047
    764547 8a4i:J (2.76) BS02 ZN ? N/A Q8BX22 36635047
    764548 8a4i:J (2.76) BS03 ZN ? N/A Q8BX22 36635047
    764549 8a4i:K (2.76) BS01 dna ? N/A Q8BX22 36635047
    764550 8a4i:K (2.76) BS02 ZN ? N/A Q8BX22 36635047
    764551 8a4i:K (2.76) BS03 ZN ? N/A Q8BX22 36635047
    764552 8a4i:L (2.76) BS01 dna ? N/A Q8BX22 36635047
    764553 8a4i:L (2.76) BS02 dna ? N/A Q8BX22 36635047
    764554 8a4i:L (2.76) BS03 ZN ? N/A Q8BX22 36635047
    764555 8a4i:L (2.76) BS04 ZN ? N/A Q8BX22 36635047
    764556 8a4m:A (1.98) BS01 ZN 3.5.2.6 GO:0046872 ... B8QIQ9 36450011
    764557 8a4m:A (1.98) BS02 ZN 3.5.2.6 GO:0046872 ... B8QIQ9 36450011
    764558 8a4m:A (1.98) BS03 L2R 3.5.2.6 GO:0046872 ... B8QIQ9 36450011
    764559 8a4n:A (0.93) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 N/A
    764560 8a4q:A (1.75) BS01 V9R 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 36179320
    764561 8a4r:AAA (3.59) BS01 PYC 5.1.1.4 GO:0003824 ... E3PTZ4 N/A
    764562 8a4r:BBB (3.59) BS01 PYC 5.1.1.4 GO:0003824 ... E3PTZ4 N/A
    764563 8a4t:A (2.5) BS01 O6K 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 36179320
    764564 8a4t:B (2.5) BS01 O6K 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 36179320
    764565 8a4u:A (1.9) BS01 L2X 3.4.22.15 GO:0006508 ... P07711 38630165
    764566 8a4u:B (1.9) BS01 L2X 3.4.22.15 GO:0006508 ... P07711 38630165
    764567 8a4u:C (1.9) BS01 L2X 3.4.22.15 GO:0006508 ... P07711 38630165
    764568 8a4u:D (1.9) BS01 L2X 3.4.22.15 GO:0006508 ... P07711 38630165
    764569 8a4v:A (1.65) BS01 E64 3.4.22.15 GO:0006508 ... P07711 38630165
    764570 8a4v:B (1.65) BS01 E64 3.4.22.15 GO:0006508 ... P07711 38630165
    764571 8a4v:C (1.65) BS01 E64 3.4.22.15 GO:0006508 ... P07711 38630165
    764572 8a4v:D (1.65) BS01 E64 3.4.22.15 GO:0006508 ... P07711 38630165
    764573 8a4w:A (1.4) BS01 L2F 3.4.22.15 GO:0006508 ... P07711 38630165
    764574 8a4w:B (1.4) BS01 L2F 3.4.22.15 GO:0006508 ... P07711 38630165
    764575 8a4w:C (1.4) BS01 L2F 3.4.22.15 GO:0006508 ... P07711 38630165
    764576 8a4w:D (1.4) BS01 L2F 3.4.22.15 GO:0006508 ... P07711 38630165
    764577 8a4x:A (1.8) BS01 L3F 3.4.22.15 GO:0006508 ... P07711 38630165
    764578 8a4x:B (1.8) BS01 L3F 3.4.22.15 GO:0006508 ... P07711 38630165
    764579 8a4x:C (1.8) BS01 L3F 3.4.22.15 GO:0006508 ... P07711 38630165
    764580 8a4x:D (1.8) BS01 L3F 3.4.22.15 GO:0006508 ... P07711 38630165
    764581 8a4y:A (1.099) BS01 QO6 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 36412088
    764582 8a50:B (1.484) BS01 peptide ? N/A O75031 37889963
    764583 8a52:A (2.461) BS01 ATP ?
    2.7.13.3    		 GO:0000155 ... P23222
    Q88JB0    		 N/A
    764584 8a52:A (2.461) BS02 FMN ?
    2.7.13.3    		 GO:0000155 ... P23222
    Q88JB0    		 N/A
    764585 8a52:B (2.461) BS01 ATP ?
    2.7.13.3    		 GO:0000155 ... P23222
    Q88JB0    		 N/A
    764586 8a52:B (2.461) BS02 FMN ?
    2.7.13.3    		 GO:0000155 ... P23222
    Q88JB0    		 N/A
    764587 8a56:A (2.05) BS01 FAD ? GO:0000166 ... Q82ZQ9 36009332
    764588 8a56:A (2.05) BS02 PAP ? GO:0000166 ... Q82ZQ9 36009332
    764589 8a56:A (2.05) BS03 PAP ? GO:0000166 ... Q82ZQ9 36009332
    764590 8a56:A (2.05) BS04 FAD ? GO:0000166 ... Q82ZQ9 36009332
    764591 8a56:B (2.05) BS01 FAD ? GO:0000166 ... Q82ZQ9 36009332
    764592 8a56:B (2.05) BS02 PAP ? GO:0000166 ... Q82ZQ9 36009332
    764593 8a56:B (2.05) BS03 PAP ? GO:0000166 ... Q82ZQ9 36009332
    764594 8a56:B (2.05) BS04 FAD ? GO:0000166 ... Q82ZQ9 36009332
    764595 8a57:1 (2.3) BS01 rna ? GO:0003735 ... P66144 36300626
    764596 8a57:2 (2.3) BS01 rna ? GO:0003735 ... P66166 36300626
    764597 8a57:3 (2.3) BS01 rna ? GO:0003735 ... Q927M5 36300626
    764598 8a57:3 (2.3) BS02 rna ? GO:0003735 ... Q927M5 36300626
    764599 8a57:4 (2.3) BS01 rna ? GO:0003735 ... P0A485 36300626
    764600 8a57:5 (2.3) BS01 rna ? GO:0003735 ... P66207 36300626
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).