SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    766601 8agx:t (2.4) BS01 rna ? GO:0002181 ... Q12690 36804914
    766602 8agx:t (2.4) BS02 rna ? GO:0002181 ... Q12690 36804914
    766603 8agx:u (2.4) BS01 rna ? GO:0000027 ... P36105 36804914
    766604 8agx:v (2.4) BS01 rna ? GO:0002182 ... P23301 36804914
    766605 8agx:w (2.4) BS01 rna ? GO:0000055 ... P0CX43 36804914
    766606 8agx:z (2.4) BS01 rna ? GO:0000027 ... P0CX53 36804914
    766607 8agy:A (1.5) BS01 peptide N/A N/A N/A N/A
    766608 8agz:0 (2.6) BS01 rna ? GO:0000027 ... P05317 36804914
    766609 8agz:A (2.6) BS01 rna ? GO:0002181 ... P05748 36804914
    766610 8agz:A (2.6) BS02 rna ? GO:0002181 ... P05748 36804914
    766611 8agz:B (2.6) BS01 rna ? GO:0000470 ... P26784 36804914
    766612 8agz:C (2.6) BS01 rna ? GO:0000448 ... P05740 36804914
    766613 8agz:C (2.6) BS02 rna ? GO:0000448 ... P05740 36804914
    766614 8agz:D (2.6) BS01 rna ? GO:0002181 ... P0CX49 36804914
    766615 8agz:E (2.6) BS01 rna ? GO:0002181 ... P0CX82 36804914
    766616 8agz:F (2.6) BS01 rna ? GO:0002181 ... P0CX23 36804914
    766617 8agz:F (2.6) BS02 rna ? GO:0002181 ... P0CX23 36804914
    766618 8agz:G (2.6) BS01 rna ? GO:0002181 ... Q02753 36804914
    766619 8agz:G (2.6) BS02 rna ? GO:0002181 ... Q02753 36804914
    766620 8agz:H (2.6) BS01 rna ? GO:0002181 ... P05749 36804914
    766621 8agz:I (2.6) BS01 rna ? GO:0002181 ... P0CX41 36804914
    766622 8agz:J (2.6) BS01 rna ? GO:0002181 ... P04449 36804914
    766623 8agz:K (2.6) BS01 rna ? GO:0000027 ... P04456 36804914
    766624 8agz:K (2.6) BS02 rna ? GO:0000027 ... P04456 36804914
    766625 8agz:L (2.6) BS01 rna ? GO:0002181 ... P05743 36804914
    766626 8agz:L (2.6) BS02 rna ? GO:0002181 ... P05743 36804914
    766627 8agz:M (2.6) BS01 rna ? GO:0002181 ... P0C2H6 36804914
    766628 8agz:N (2.6) BS01 rna ? GO:0002181 ... P02406 36804914
    766629 8agz:O (2.6) BS01 rna ? GO:0002181 ... P05747 36804914
    766630 8agz:P (2.6) BS01 rna ? GO:0002181 ... P14120 36804914
    766631 8agz:Q (2.6) BS01 rna ? GO:0002181 ... P0C2H8 36804914
    766632 8agz:R (2.6) BS01 rna ? GO:0002181 ... P38061 36804914
    766633 8agz:R (2.6) BS02 MG ? GO:0002181 ... P38061 36804914
    766634 8agz:S (2.6) BS01 rna ? GO:0000027 ... P05744 36804914
    766635 8agz:T (2.6) BS01 rna ? GO:0002181 ... P87262 36804914
    766636 8agz:T (2.6) BS02 ZN ? GO:0002181 ... P87262 36804914
    766637 8agz:U (2.6) BS01 rna ? GO:0000463 ... P0CX84 36804914
    766638 8agz:U (2.6) BS02 rna ? GO:0000463 ... P0CX84 36804914
    766639 8agz:V (2.6) BS01 rna ? GO:0002181 ... P05745 36804914
    766640 8agz:W (2.6) BS01 rna ? GO:0000448 ... P49166 36804914
    766641 8agz:W (2.6) BS02 rna ? GO:0000448 ... P49166 36804914
    766642 8agz:W (2.6) BS03 ZN ? GO:0000448 ... P49166 36804914
    766643 8agz:X (2.6) BS01 rna ? GO:0002181 ... P49167 36804914
    766644 8agz:Y (2.6) BS01 rna ? GO:0002181 ... P04650 36804914
    766645 8agz:Y (2.6) BS02 rna ? GO:0002181 ... P04650 36804914
    766646 8agz:Z (2.6) BS01 rna ? GO:0000027 ... P0CH08 36804914
    766647 8agz:Z (2.6) BS02 ZN ? GO:0000027 ... P0CH08 36804914
    766648 8agz:a (2.6) BS01 rna ? GO:0000049 ... Q12532 36804914
    766649 8agz:a (2.6) BS02 rna ? GO:0000049 ... Q12532 36804914
    766650 8agz:a (2.6) BS03 rna ? GO:0000049 ... Q12532 36804914
    766651 8agz:b (2.6) BS01 rna ? GO:0002181 ... P0CX27 36804914
    766652 8agz:b (2.6) BS02 ZN ? GO:0002181 ... P0CX27 36804914
    766653 8agz:c (2.6) BS01 rna ? GO:0002181 ... P0CX25 36804914
    766654 8agz:c (2.6) BS02 ZN ? GO:0002181 ... P0CX25 36804914
    766655 8agz:e (2.6) BS01 rna 2.3.2.27 GO:0000781 ... Q04781 36804914
    766656 8agz:e (2.6) BS02 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    766657 8agz:e (2.6) BS03 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    766658 8agz:g (2.6) BS01 rna ? GO:0000054 ... Q12522 36804914
    766659 8agz:j (2.6) BS01 rna ? GO:0002181 ... P0CX45 36804914
    766660 8agz:j (2.6) BS02 MG ? GO:0002181 ... P0CX45 36804914
    766661 8agz:k (2.6) BS01 rna ? GO:0000027 ... P14126 36804914
    766662 8agz:k (2.6) BS02 MG ? GO:0000027 ... P14126 36804914
    766663 8agz:l (2.6) BS01 rna ? GO:0002181 ... P10664 36804914
    766664 8agz:l (2.6) BS02 rna ? GO:0002181 ... P10664 36804914
    766665 8agz:l (2.6) BS03 peptide ? GO:0002181 ... P10664 36804914
    766666 8agz:m (2.6) BS01 rna ? GO:0000027 ... P26321 36804914
    766667 8agz:m (2.6) BS02 rna ? GO:0000027 ... P26321 36804914
    766668 8agz:n (2.6) BS01 rna ? GO:0000027 ... P05739 36804914
    766669 8agz:o (2.6) BS01 rna ? GO:0000463 ... P05737 36804914
    766670 8agz:o (2.6) BS02 rna ? GO:0000463 ... P05737 36804914
    766671 8agz:p (2.6) BS01 rna ? GO:0000470 ... P17076 36804914
    766672 8agz:p (2.6) BS02 rna ? GO:0000470 ... P17076 36804914
    766673 8agz:q (2.6) BS01 rna ? GO:0002181 ... P05738 36804914
    766674 8agz:r (2.6) BS01 rna ? GO:0000027 ... P41805 36804914
    766675 8agz:r (2.6) BS02 rna ? GO:0000027 ... P41805 36804914
    766676 8agz:r (2.6) BS03 rna ? GO:0000027 ... P41805 36804914
    766677 8agz:s (2.6) BS01 rna ? GO:0000027 ... P0C0W9 36804914
    766678 8agz:s (2.6) BS02 rna ? GO:0000027 ... P0C0W9 36804914
    766679 8agz:s (2.6) BS03 rna ? GO:0000027 ... P0C0W9 36804914
    766680 8agz:t (2.6) BS01 rna ? GO:0002181 ... Q12690 36804914
    766681 8agz:t (2.6) BS02 rna ? GO:0002181 ... Q12690 36804914
    766682 8agz:u (2.6) BS01 rna ? GO:0000027 ... P36105 36804914
    766683 8agz:v (2.6) BS01 rna ? GO:0002182 ... P23301 36804914
    766684 8agz:w (2.6) BS01 rna ? GO:0000055 ... P0CX43 36804914
    766685 8agz:z (2.6) BS01 rna ? GO:0000027 ... P0CX53 36804914
    766686 8ah3:A (1.4) BS01 CA ? GO:0046872 ... F5IZG2 N/A
    766687 8ah3:A (1.4) BS02 CA ? GO:0046872 ... F5IZG2 N/A
    766688 8ahc:A (1.504) BS01 M2O ? N/A Q9H8M2 36649575
    766689 8ahc:B (1.504) BS01 M2O ? N/A Q9H8M2 36649575
    766690 8ahe:A (2.108) BS01 M2U 5.1.3.14 GO:0000166 ... A0A348ACF3 36426238
    766691 8ahe:B (2.108) BS01 M2U 5.1.3.14 GO:0000166 ... A0A348ACF3 36426238
    766692 8ahf:A (2.271) BS01 M3U 5.1.3.14 GO:0000166 ... A0A348ACF3 36426238
    766693 8ahf:B (2.271) BS01 M3U 5.1.3.14 GO:0000166 ... A0A348ACF3 36426238
    766694 8ahg:A (1.885) BS01 M4I 2.7.11.1 GO:0004672 ... O96013 36426238
    766695 8ahh:A (2.037) BS01 M4X 2.7.11.1 GO:0004672 ... O96013 36426238
    766696 8ahi:A (2.69) BS01 M56 2.7.11.1 GO:0004672 ... O96013 36426238
    766697 8ahm:A (2.42) BS01 GTP 3.6.5.- GO:0000226 ... P81947 36281761
    766698 8ahm:A (2.42) BS02 CA 3.6.5.- GO:0000226 ... P81947 36281761
    766699 8ahm:B (2.42) BS01 GDP ? GO:0000226 ... Q6B856 36281761
    766700 8ahm:C (2.42) BS01 GTP 3.6.5.- GO:0000226 ... P81947 36281761
    766701 8ahm:C (2.42) BS02 CA 3.6.5.- GO:0000226 ... P81947 36281761
    766702 8ahm:D (2.42) BS01 GDP ? GO:0000226 ... Q6B856 36281761
    766703 8ahm:D (2.42) BS02 M5U ? GO:0000226 ... Q6B856 36281761
    766704 8ahm:F (2.42) BS01 ACP N/A GO:0036211 ... N/A 36281761
    766705 8ahm:F (2.42) BS02 MG N/A GO:0036211 ... N/A 36281761
    766706 8ahq:C (2.1) BS01 PNS ? GO:0031177 ... A4PHN0 36899003
    766707 8ahq:D (2.1) BS01 PNS ? GO:0031177 ... A4PHN0 36899003
    766708 8ahr:A (1.9) BS01 PLP ? GO:0003824 ... D5EHC5 36903355
    766709 8ahr:B (1.9) BS01 PLP ? GO:0003824 ... D5EHC5 36903355
    766710 8ahs:A (2.48) BS01 peptide ? GO:0000086 ... P0DP23 36906144
    766711 8ahs:A (2.48) BS02 CA ? GO:0000086 ... P0DP23 36906144
    766712 8ahs:A (2.48) BS03 CA ? GO:0000086 ... P0DP23 36906144
    766713 8ahs:A (2.48) BS04 CA ? GO:0000086 ... P0DP23 36906144
    766714 8ahs:A (2.48) BS05 CA ? GO:0000086 ... P0DP23 36906144
    766715 8aht:A (2.2) BS01 peptide ? GO:0005509 ... P62203 36906144
    766716 8aht:A (2.2) BS02 CA ? GO:0005509 ... P62203 36906144
    766717 8aht:A (2.2) BS03 CA ? GO:0005509 ... P62203 36906144
    766718 8aht:A (2.2) BS04 CA ? GO:0005509 ... P62203 36906144
    766719 8aht:A (2.2) BS05 CA ? GO:0005509 ... P62203 36906144
    766720 8aht:B (2.2) BS01 peptide ? GO:0005509 ... P62203 36906144
    766721 8aht:B (2.2) BS02 CA ? GO:0005509 ... P62203 36906144
    766722 8aht:B (2.2) BS03 CA ? GO:0005509 ... P62203 36906144
    766723 8aht:B (2.2) BS04 CA ? GO:0005509 ... P62203 36906144
    766724 8aht:B (2.2) BS05 CA ? GO:0005509 ... P62203 36906144
    766725 8aht:C (2.2) BS01 peptide ? GO:0005509 ... P62203 36906144
    766726 8aht:C (2.2) BS02 CA ? GO:0005509 ... P62203 36906144
    766727 8aht:C (2.2) BS03 CA ? GO:0005509 ... P62203 36906144
    766728 8aht:C (2.2) BS04 CA ? GO:0005509 ... P62203 36906144
    766729 8aht:C (2.2) BS05 CA ? GO:0005509 ... P62203 36906144
    766730 8aht:D (2.2) BS01 peptide ? GO:0005509 ... P62203 36906144
    766731 8aht:D (2.2) BS02 CA ? GO:0005509 ... P62203 36906144
    766732 8aht:D (2.2) BS03 CA ? GO:0005509 ... P62203 36906144
    766733 8aht:D (2.2) BS04 CA ? GO:0005509 ... P62203 36906144
    766734 8aht:D (2.2) BS05 CA ? GO:0005509 ... P62203 36906144
    766735 8ahu:A (1.41) BS01 LCS ? GO:0003824 ... F4KWH0 37331714
    766736 8ahv:A (1.7) BS01 M6L 3.4.22.15 GO:0006508 ... P07711 38630165
    766737 8ahv:B (1.7) BS01 M6L 3.4.22.15 GO:0006508 ... P07711 38630165
    766738 8ahv:C (1.7) BS01 M6L 3.4.22.15 GO:0006508 ... P07711 38630165
    766739 8ahv:D (1.7) BS01 M6L 3.4.22.15 GO:0006508 ... P07711 38630165
    766740 8ahx:A (3.11) BS01 FES 7.-.-.- GO:0005886 ... C1DMA8 38890433
    766741 8ahx:B (3.11) BS01 SF4 7.-.-.- GO:0005886 ... C1DMA7 38890433
    766742 8ahx:B (3.11) BS02 SF4 7.-.-.- GO:0005886 ... C1DMA7 38890433
    766743 8ahx:C (3.11) BS01 FMN 7.-.-.- GO:0005886 ... C1DMA6 38890433
    766744 8ahx:C (3.11) BS02 SF4 7.-.-.- GO:0005886 ... C1DMA6 38890433
    766745 8ahx:C (3.11) BS03 SF4 7.-.-.- GO:0005886 ... C1DMA6 38890433
    766746 8ahx:D (3.11) BS01 RBF 7.-.-.- GO:0005886 ... C1DMA5 38890433
    766747 8ahx:D (3.11) BS02 FMN 7.-.-.- GO:0005886 ... C1DMA5 38890433
    766748 8ahx:E (3.11) BS01 FES 7.-.-.- GO:0005886 ... Q9F5Y1 38890433
    766749 8ahx:G (3.11) BS01 FMN 7.-.-.- GO:0005886 ... C1DMA4 38890433
    766750 8ahy:B (1.7) BS01 peptide ? GO:0005245 ... P62166 38018500
    766751 8ahy:B (1.7) BS02 CA ? GO:0005245 ... P62166 38018500
    766752 8ahy:B (1.7) BS03 CA ? GO:0005245 ... P62166 38018500
    766753 8ai0:A (1.6) BS01 peptide ? GO:0000122 ... P31947 37676236
    766754 8ai0:A (1.6) BS02 M79 ? GO:0000122 ... P31947 37676236
    766755 8ai1:A (2.4) BS01 SF4 ? GO:0003824 ... Q45595 38158457
    766756 8ai1:A (2.4) BS02 SF4 ? GO:0003824 ... Q45595 38158457
    766757 8ai1:A (2.4) BS03 SAH ? GO:0003824 ... Q45595 38158457
    766758 8ai1:B (2.4) BS01 SF4 ? GO:0003824 ... Q45595 38158457
    766759 8ai1:B (2.4) BS02 SF4 ? GO:0003824 ... Q45595 38158457
    766760 8ai1:B (2.4) BS03 SAH ? GO:0003824 ... Q45595 38158457
    766761 8ai2:A (2.393) BS01 peptide ? GO:0003824 ... Q45595 38158457
    766762 8ai2:A (2.393) BS02 SF4 ? GO:0003824 ... Q45595 38158457
    766763 8ai2:A (2.393) BS03 SF4 ? GO:0003824 ... Q45595 38158457
    766764 8ai2:A (2.393) BS04 SAH ? GO:0003824 ... Q45595 38158457
    766765 8ai2:B (2.393) BS01 peptide ? GO:0003824 ... Q45595 38158457
    766766 8ai2:B (2.393) BS02 SF4 ? GO:0003824 ... Q45595 38158457
    766767 8ai2:B (2.393) BS03 SF4 ? GO:0003824 ... Q45595 38158457
    766768 8ai2:B (2.393) BS04 SAH ? GO:0003824 ... Q45595 38158457
    766769 8ai3:A (2.1) BS01 SF4 ? GO:0003824 ... Q45595 38158457
    766770 8ai3:A (2.1) BS02 SF4 ? GO:0003824 ... Q45595 38158457
    766771 8ai3:A (2.1) BS03 SAM ? GO:0003824 ... Q45595 38158457
    766772 8ai3:B (2.1) BS01 SF4 ? GO:0003824 ... Q45595 38158457
    766773 8ai3:B (2.1) BS02 SF4 ? GO:0003824 ... Q45595 38158457
    766774 8ai3:B (2.1) BS03 SAM ? GO:0003824 ... Q45595 38158457
    766775 8ai4:A (1.75) BS01 peptide ? GO:0003824 ... Q45595 38158457
    766776 8ai4:A (1.75) BS02 SF4 ? GO:0003824 ... Q45595 38158457
    766777 8ai4:A (1.75) BS03 SF4 ? GO:0003824 ... Q45595 38158457
    766778 8ai4:A (1.75) BS04 SAH ? GO:0003824 ... Q45595 38158457
    766779 8ai4:B (1.75) BS01 peptide ? GO:0003824 ... Q45595 38158457
    766780 8ai4:B (1.75) BS02 SF4 ? GO:0003824 ... Q45595 38158457
    766781 8ai4:B (1.75) BS03 SF4 ? GO:0003824 ... Q45595 38158457
    766782 8ai4:B (1.75) BS04 SAH ? GO:0003824 ... Q45595 38158457
    766783 8ai5:A (2.15) BS01 peptide ? GO:0003824 ... Q45595 38158457
    766784 8ai5:A (2.15) BS02 SF4 ? GO:0003824 ... Q45595 38158457
    766785 8ai5:A (2.15) BS03 SF4 ? GO:0003824 ... Q45595 38158457
    766786 8ai5:A (2.15) BS04 SAH ? GO:0003824 ... Q45595 38158457
    766787 8ai5:B (2.15) BS01 peptide ? GO:0003824 ... Q45595 38158457
    766788 8ai5:B (2.15) BS02 SF4 ? GO:0003824 ... Q45595 38158457
    766789 8ai5:B (2.15) BS03 SF4 ? GO:0003824 ... Q45595 38158457
    766790 8ai5:B (2.15) BS04 SAH ? GO:0003824 ... Q45595 38158457
    766791 8ai6:A (1.95) BS01 SF4 ? GO:0003824 ... Q45595 38158457
    766792 8ai6:A (1.95) BS02 SF4 ? GO:0003824 ... Q45595 38158457
    766793 8ai6:A (1.95) BS03 SAH ? GO:0003824 ... Q45595 38158457
    766794 8ai6:B (1.95) BS01 SF4 ? GO:0003824 ... Q45595 38158457
    766795 8ai6:B (1.95) BS02 SF4 ? GO:0003824 ... Q45595 38158457
    766796 8ai6:B (1.95) BS03 SAH ? GO:0003824 ... Q45595 38158457
    766797 8ai7:F (2.13) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 36586299
    766798 8ai7:F (2.13) BS02 M8X 3.1.1.8 GO:0001540 ... P06276 36586299
    766799 8ai8:A (1.7) BS01 GSH ? GO:0004364 ... Q55139 36291676
    766800 8ai8:B (1.7) BS01 GSH ? GO:0004364 ... Q55139 36291676

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).