SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    768401 8apn:AB (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768402 8apn:AB (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768403 8apn:AB (3.1) BS03 rna N/A GO:0003735 ... N/A 36253367
    768404 8apn:AC (3.1) BS01 rna N/A N/A N/A 36253367
    768405 8apn:AC (3.1) BS02 rna N/A N/A N/A 36253367
    768406 8apn:AC (3.1) BS03 rna N/A N/A N/A 36253367
    768407 8apn:AC (3.1) BS04 rna N/A N/A N/A 36253367
    768408 8apn:AC (3.1) BS05 rna N/A N/A N/A 36253367
    768409 8apn:AD (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768410 8apn:AD (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768411 8apn:AD (3.1) BS03 ZN N/A GO:0003735 ... N/A 36253367
    768412 8apn:AE (3.1) BS01 rna N/A N/A N/A 36253367
    768413 8apn:AF (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768414 8apn:AF (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768415 8apn:AG (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768416 8apn:AI (3.1) BS01 rna N/A N/A N/A 36253367
    768417 8apn:AI (3.1) BS02 rna N/A N/A N/A 36253367
    768418 8apn:AI (3.1) BS03 rna N/A N/A N/A 36253367
    768419 8apn:AJ (3.1) BS01 rna N/A N/A N/A 36253367
    768420 8apn:AK (3.1) BS01 rna N/A N/A N/A 36253367
    768421 8apn:AK (3.1) BS02 rna N/A N/A N/A 36253367
    768422 8apn:AL (3.1) BS01 rna N/A N/A N/A 36253367
    768423 8apn:AM (3.1) BS01 rna N/A N/A N/A 36253367
    768424 8apn:AM (3.1) BS02 rna N/A N/A N/A 36253367
    768425 8apn:AM (3.1) BS03 rna N/A N/A N/A 36253367
    768426 8apn:AM (3.1) BS04 rna N/A N/A N/A 36253367
    768427 8apn:AN (3.1) BS01 rna N/A N/A N/A 36253367
    768428 8apn:AN (3.1) BS02 rna N/A N/A N/A 36253367
    768429 8apn:AO (3.1) BS01 rna N/A N/A N/A 36253367
    768430 8apn:Aa (3.1) BS01 rna N/A GO:0003723 ... N/A 36253367
    768431 8apn:Aa (3.1) BS02 rna N/A GO:0003723 ... N/A 36253367
    768432 8apn:Aa (3.1) BS03 rna N/A GO:0003723 ... N/A 36253367
    768433 8apn:Aa (3.1) BS04 rna N/A GO:0003723 ... N/A 36253367
    768434 8apn:Ab (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768435 8apn:Ab (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768436 8apn:Ac (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768437 8apn:Ac (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768438 8apn:Ac (3.1) BS03 rna N/A GO:0003735 ... N/A 36253367
    768439 8apn:Ac (3.1) BS04 rna N/A GO:0003735 ... N/A 36253367
    768440 8apn:Ac (3.1) BS05 rna N/A GO:0003735 ... N/A 36253367
    768441 8apn:Ad (3.1) BS01 rna N/A N/A N/A 36253367
    768442 8apn:Ae (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768443 8apn:Ah (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768444 8apn:Ah (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768445 8apn:Ah (3.1) BS03 rna N/A GO:0003735 ... N/A 36253367
    768446 8apn:Ah (3.1) BS04 rna N/A GO:0003735 ... N/A 36253367
    768447 8apn:Ai (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768448 8apn:Ai (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768449 8apn:Aj (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768450 8apn:Aj (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768451 8apn:Aj (3.1) BS03 rna N/A GO:0003735 ... N/A 36253367
    768452 8apn:Aj (3.1) BS04 rna N/A GO:0003735 ... N/A 36253367
    768453 8apn:Aj (3.1) BS05 rna N/A GO:0003735 ... N/A 36253367
    768454 8apn:Ak (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768455 8apn:Ak (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768456 8apn:Ak (3.1) BS03 rna N/A GO:0003735 ... N/A 36253367
    768457 8apn:Ak (3.1) BS04 rna N/A GO:0003735 ... N/A 36253367
    768458 8apn:Ak (3.1) BS05 rna N/A GO:0003735 ... N/A 36253367
    768459 8apn:Ak (3.1) BS06 rna N/A GO:0003735 ... N/A 36253367
    768460 8apn:Al (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768461 8apn:Al (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768462 8apn:Al (3.1) BS03 rna N/A GO:0003735 ... N/A 36253367
    768463 8apn:Am (3.1) BS01 rna N/A N/A N/A 36253367
    768464 8apn:Am (3.1) BS02 rna N/A N/A N/A 36253367
    768465 8apn:An (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768466 8apn:Ao (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768467 8apn:Ao (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768468 8apn:Ao (3.1) BS03 rna N/A GO:0003735 ... N/A 36253367
    768469 8apn:Ao (3.1) BS04 rna N/A GO:0003735 ... N/A 36253367
    768470 8apn:Ap (3.1) BS01 rna N/A GO:0003723 ... N/A 36253367
    768471 8apn:Ap (3.1) BS02 rna N/A GO:0003723 ... N/A 36253367
    768472 8apn:Ap (3.1) BS03 rna N/A GO:0003723 ... N/A 36253367
    768473 8apn:Ap (3.1) BS04 rna N/A GO:0003723 ... N/A 36253367
    768474 8apn:Aq (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768475 8apn:Aq (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768476 8apn:Aq (3.1) BS03 rna N/A GO:0003735 ... N/A 36253367
    768477 8apn:Aq (3.1) BS04 rna N/A GO:0003735 ... N/A 36253367
    768478 8apn:Aq (3.1) BS05 rna N/A GO:0003735 ... N/A 36253367
    768479 8apn:Aq (3.1) BS06 peptide N/A GO:0003735 ... N/A 36253367
    768480 8apn:Ar (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768481 8apn:Ar (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768482 8apn:Ar (3.1) BS03 peptide N/A GO:0003735 ... N/A 36253367
    768483 8apn:At (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768484 8apn:Au (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768485 8apn:Au (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768486 8apn:Av (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768487 8apn:Ax (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768488 8apn:Ax (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768489 8apn:Ax (3.1) BS03 rna N/A GO:0003735 ... N/A 36253367
    768490 8apn:Az (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768491 8apn:Az (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768492 8apn:Az (3.1) BS03 rna N/A GO:0003735 ... N/A 36253367
    768493 8apn:Az (3.1) BS04 rna N/A GO:0003735 ... N/A 36253367
    768494 8apn:BB (3.1) BS01 rna N/A N/A N/A 36253367
    768495 8apn:BB (3.1) BS02 rna N/A N/A N/A 36253367
    768496 8apn:BC (3.1) BS01 rna N/A N/A N/A 36253367
    768497 8apn:BD (3.1) BS01 rna N/A N/A N/A 36253367
    768498 8apn:BD (3.1) BS02 rna N/A N/A N/A 36253367
    768499 8apn:BD (3.1) BS03 rna N/A N/A N/A 36253367
    768500 8apn:BE (3.1) BS01 rna N/A N/A N/A 36253367
    768501 8apn:BF (3.1) BS01 rna N/A N/A N/A 36253367
    768502 8apn:BF (3.1) BS02 rna N/A N/A N/A 36253367
    768503 8apn:BF (3.1) BS03 rna N/A N/A N/A 36253367
    768504 8apn:Ba (3.1) BS01 peptide N/A N/A N/A 36253367
    768505 8apn:Ba (3.1) BS02 peptide N/A N/A N/A 36253367
    768506 8apn:Bc (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768507 8apn:Bd (3.1) BS01 rna N/A N/A N/A 36253367
    768508 8apn:Bd (3.1) BS02 rna N/A N/A N/A 36253367
    768509 8apn:Be (3.1) BS01 rna N/A GO:0003723 ... N/A 36253367
    768510 8apn:Be (3.1) BS02 rna N/A GO:0003723 ... N/A 36253367
    768511 8apn:Be (3.1) BS03 rna N/A GO:0003723 ... N/A 36253367
    768512 8apn:Be (3.1) BS04 rna N/A GO:0003723 ... N/A 36253367
    768513 8apn:Bf (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768514 8apn:Bg (3.1) BS01 rna N/A GO:0006412 ... N/A 36253367
    768515 8apn:Bh (3.1) BS01 rna N/A N/A N/A 36253367
    768516 8apn:Bh (3.1) BS02 rna N/A N/A N/A 36253367
    768517 8apn:Bh (3.1) BS03 rna N/A N/A N/A 36253367
    768518 8apn:Bi (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768519 8apn:Bi (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768520 8apn:Bi (3.1) BS03 rna N/A GO:0003735 ... N/A 36253367
    768521 8apn:Bj (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768522 8apn:Bj (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768523 8apn:Bk (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768524 8apn:Bk (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768525 8apn:Bl (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768526 8apn:Bl (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768527 8apn:Bl (3.1) BS03 rna N/A GO:0003735 ... N/A 36253367
    768528 8apn:Bm (3.1) BS01 rna N/A GO:0003676 ... N/A 36253367
    768529 8apn:Bm (3.1) BS02 rna N/A GO:0003676 ... N/A 36253367
    768530 8apn:Bm (3.1) BS03 MG N/A GO:0003676 ... N/A 36253367
    768531 8apn:Bn (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768532 8apn:Bn (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768533 8apn:Bo (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768534 8apn:Bp (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768535 8apn:Bp (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768536 8apn:Bq (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768537 8apn:Bq (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768538 8apn:Bq (3.1) BS03 rna N/A GO:0003735 ... N/A 36253367
    768539 8apn:Br (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768540 8apn:Br (3.1) BS02 peptide N/A GO:0003735 ... N/A 36253367
    768541 8apn:Bs (3.1) BS01 rna N/A GO:0003723 ... N/A 36253367
    768542 8apn:Bs (3.1) BS02 rna N/A GO:0003723 ... N/A 36253367
    768543 8apn:Bt (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768544 8apn:Bu (3.1) BS01 peptide N/A N/A N/A 36253367
    768545 8apn:Bv (3.1) BS01 rna N/A N/A N/A 36253367
    768546 8apn:Bv (3.1) BS02 rna N/A N/A N/A 36253367
    768547 8apn:Bw (3.1) BS01 rna N/A N/A N/A 36253367
    768548 8apn:Bw (3.1) BS02 MG N/A N/A N/A 36253367
    768549 8apn:Bw (3.1) BS03 ATP N/A N/A N/A 36253367
    768550 8apn:By (3.1) BS01 rna N/A N/A N/A 36253367
    768551 8apn:Bz (3.1) BS01 rna N/A GO:0003735 ... N/A 36253367
    768552 8apn:Bz (3.1) BS02 rna N/A GO:0003735 ... N/A 36253367
    768553 8apn:Xa (3.1) BS01 rna N/A N/A N/A 36253367
    768554 8apn:Xb (3.1) BS01 rna N/A N/A N/A 36253367
    768555 8apn:Xc (3.1) BS01 rna N/A N/A N/A 36253367
    768556 8apn:Xd (3.1) BS01 rna N/A N/A N/A 36253367
    768557 8apn:Xd (3.1) BS02 rna N/A N/A N/A 36253367
    768558 8apn:Xe (3.1) BS01 rna N/A N/A N/A 36253367
    768559 8apn:Xe (3.1) BS02 rna N/A N/A N/A 36253367
    768560 8apn:Xe (3.1) BS03 rna N/A N/A N/A 36253367
    768561 8apn:Xf (3.1) BS01 rna N/A N/A N/A 36253367
    768562 8apn:Xg (3.1) BS01 rna N/A N/A N/A 36253367
    768563 8apn:Xg (3.1) BS02 rna N/A N/A N/A 36253367
    768564 8apn:Ya (3.1) BS01 rna N/A N/A N/A 36253367
    768565 8apn:Ya (3.1) BS02 rna N/A N/A N/A 36253367
    768566 8apn:Yd (3.1) BS01 rna N/A N/A N/A 36253367
    768567 8apn:Ye (3.1) BS01 rna N/A N/A N/A 36253367
    768568 8apn:Yl (3.1) BS01 rna N/A N/A N/A 36253367
    768569 8apo:AA (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    768570 8apo:AB (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    768571 8apo:AB (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    768572 8apo:AB (3.2) BS03 rna N/A GO:0003735 ... N/A 36253367
    768573 8apo:AC (3.2) BS01 rna N/A N/A N/A 36253367
    768574 8apo:AC (3.2) BS02 rna N/A N/A N/A 36253367
    768575 8apo:AC (3.2) BS03 rna N/A N/A N/A 36253367
    768576 8apo:AC (3.2) BS04 rna N/A N/A N/A 36253367
    768577 8apo:AD (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    768578 8apo:AD (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    768579 8apo:AD (3.2) BS03 ZN N/A GO:0003735 ... N/A 36253367
    768580 8apo:AE (3.2) BS01 rna N/A N/A N/A 36253367
    768581 8apo:AF (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    768582 8apo:AF (3.2) BS02 rna N/A GO:0003735 ... N/A 36253367
    768583 8apo:AG (3.2) BS01 rna N/A GO:0003735 ... N/A 36253367
    768584 8apo:AI (3.2) BS01 rna N/A N/A N/A 36253367
    768585 8apo:AI (3.2) BS02 rna N/A N/A N/A 36253367
    768586 8apo:AI (3.2) BS03 rna N/A N/A N/A 36253367
    768587 8apo:AJ (3.2) BS01 rna N/A N/A N/A 36253367
    768588 8apo:AK (3.2) BS01 rna N/A N/A N/A 36253367
    768589 8apo:AK (3.2) BS02 rna N/A N/A N/A 36253367
    768590 8apo:AL (3.2) BS01 rna N/A N/A N/A 36253367
    768591 8apo:AM (3.2) BS01 rna N/A N/A N/A 36253367
    768592 8apo:AM (3.2) BS02 rna N/A N/A N/A 36253367
    768593 8apo:AM (3.2) BS03 rna N/A N/A N/A 36253367
    768594 8apo:AM (3.2) BS04 rna N/A N/A N/A 36253367
    768595 8apo:AN (3.2) BS01 rna N/A N/A N/A 36253367
    768596 8apo:AN (3.2) BS02 rna N/A N/A N/A 36253367
    768597 8apo:AO (3.2) BS01 rna N/A N/A N/A 36253367
    768598 8apo:Aa (3.2) BS01 rna N/A GO:0003723 ... N/A 36253367
    768599 8apo:Aa (3.2) BS02 rna N/A GO:0003723 ... N/A 36253367
    768600 8apo:Aa (3.2) BS03 rna N/A GO:0003723 ... N/A 36253367

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).