SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    770001 8acw:B (3.4) BS02 RBF 7.2.1.1 GO:0005886 ... A5F5X0 37710014
    770002 8acw:C (3.4) BS01 FMN 7.2.1.1 GO:0005886 ... A5F5Y7 37710014
    770003 8acw:D (3.4) BS01 FES 7.2.1.1 GO:0005886 ... A5F5Y6 37710014
    770004 8acw:E (3.4) BS01 FMN 7.2.1.1 GO:0005886 ... A5F5Y5 37710014
    770005 8acw:E (3.4) BS02 FES 7.2.1.1 GO:0005886 ... A5F5Y5 37710014
    770006 8acw:F (3.4) BS01 FAD 7.2.1.1 GO:0005886 ... A5F5Y4 37710014
    770007 8acw:F (3.4) BS02 FES 7.2.1.1 GO:0005886 ... A5F5Y4 37710014
    770008 8acy:B (3.5) BS01 FMN 7.2.1.1 GO:0005886 ... A5F5X0 37710014
    770009 8acy:B (3.5) BS02 RBF 7.2.1.1 GO:0005886 ... A5F5X0 37710014
    770010 8acy:B (3.5) BS03 NA 7.2.1.1 GO:0005886 ... A5F5X0 37710014
    770011 8acy:C (3.5) BS01 FMN 7.2.1.1 GO:0005886 ... A5F5Y7 37710014
    770012 8acy:D (3.5) BS01 FES 7.2.1.1 GO:0005886 ... A5F5Y6 37710014
    770013 8acy:E (3.5) BS01 FMN 7.2.1.1 GO:0005886 ... A5F5Y5 37710014
    770014 8acy:E (3.5) BS02 FES 7.2.1.1 GO:0005886 ... A5F5Y5 37710014
    770015 8acy:F (3.5) BS01 FAD 7.2.1.1 GO:0005886 ... A5F5Y4 37710014
    770016 8acy:F (3.5) BS02 FES 7.2.1.1 GO:0005886 ... A5F5Y4 37710014
    770017 8ad0:B (3.11) BS01 FMN 7.2.1.1 GO:0005886 ... A5F5X0 N/A
    770018 8ad0:B (3.11) BS02 RBF 7.2.1.1 GO:0005886 ... A5F5X0 N/A
    770019 8ad0:C (3.11) BS01 FMN 7.2.1.1 GO:0005886 ... A5F5Y7 N/A
    770020 8ad0:D (3.11) BS01 FES 7.2.1.1 GO:0005886 ... A5F5Y6 N/A
    770021 8ad0:E (3.11) BS01 FES 7.2.1.1 GO:0005886 ... A5F5Y5 N/A
    770022 8ad0:F (3.11) BS01 FAD 7.2.1.1 GO:0005886 ... A5F5Y4 N/A
    770023 8ad0:F (3.11) BS02 FES 7.2.1.1 GO:0005886 ... A5F5Y4 N/A
    770024 8ad1:C (4.1) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 36220101
    770025 8ad1:C (4.1) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 36220101
    770026 8ad1:C (4.1) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 36220101
    770027 8ad1:D (4.1) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    770028 8ad1:D (4.1) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    770029 8ad1:D (4.1) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    770030 8ad1:D (4.1) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    770031 8ad1:D (4.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    770032 8ad1:D (4.1) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36220101
    770033 8ad1:F (4.1) BS01 dna ? GO:0000976 ... P00579 36220101
    770034 8ad2:A (2.0) BS01 ZN ? N/A Q94EW1 39437181
    770035 8ad2:B (2.0) BS01 ZN ? N/A Q94EW1 39437181
    770036 8ad2:C (2.0) BS01 ZN ? N/A Q94EW1 39437181
    770037 8ad2:D (2.0) BS01 ZN ? N/A Q94EW1 39437181
    770038 8ad2:F (2.0) BS01 ZN ? N/A Q94EW1 39437181
    770039 8ad2:F (2.0) BS02 ZN ? N/A Q94EW1 39437181
    770040 8ad2:G (2.0) BS01 ZN ? N/A Q94EW1 39437181
    770041 8ad3:A (1.55) BS01 FAD 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    770042 8ad3:A (1.55) BS02 MG 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    770043 8ad3:B (1.55) BS01 FAD 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    770044 8ad4:A (1.5) BS01 FAD 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    770045 8ad4:A (1.5) BS02 NAI 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    770046 8ad4:A (1.5) BS03 NAI 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    770047 8ad4:A (1.5) BS04 NA 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    770048 8ad4:A (1.5) BS05 NA 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    770049 8ad4:B (1.5) BS01 FAD 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    770050 8ad4:B (1.5) BS02 NAI 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    770051 8ad4:B (1.5) BS03 NAI 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    770052 8ad4:B (1.5) BS04 NAI 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    770053 8ad4:B (1.5) BS05 NA 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    770054 8ad4:B (1.5) BS06 NA 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    770055 8ad5:A (1.65) BS01 FAD 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    770056 8ad5:A (1.65) BS02 NA 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    770057 8ad5:A (1.65) BS03 NAI 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    770058 8ad5:B (1.65) BS01 FAD 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    770059 8ad5:B (1.65) BS02 NA 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    770060 8ad5:B (1.65) BS03 NAI 7.2.1.1 GO:0006814 ... A5F5Y4 37710014
    770061 8ad6:A (1.52) BS01 2BA ? N/A O31698 N/A
    770062 8ad6:B (1.52) BS01 2BA ? N/A O31698 N/A
    770063 8ad7:A (2.33) BS01 DTR 1.14.19.59 GO:0004497 ... A1E280 36259362
    770064 8ad8:A (2.95) BS01 LT0 1.14.19.59 GO:0004497 ... A1E280 36259362
    770065 8ad9:A (1.43) BS01 peptide ? N/A P9WPC7 36944713
    770066 8ad9:A (1.43) BS02 peptide ? N/A P9WPC7 36944713
    770067 8ad9:B (1.43) BS01 peptide ? N/A P9WPC7 36944713
    770068 8ad9:B (1.43) BS02 peptide ? N/A P9WPC7 36944713
    770069 8adb:A (1.73) BS01 AYE ? N/A D6YWY5 36496440
    770070 8adf:A (2.13) BS01 LRA ? GO:0003677 ... P37231 37189440
    770071 8adf:B (2.13) BS01 LRA ? GO:0003677 ... P37231 37189440
    770072 8adg:A (3.0) BS01 peptide ? GO:0019867 ... P0A940 36308277
    770073 8adh:A (2.4) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 3771574
    770074 8adh:A (2.4) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 3771574
    770075 8adi:A (3.4) BS01 peptide ? GO:0019867 ... P0A940 36308277
    770076 8adj:A (2.508) BS01 LQX 3.2.1.143 GO:0004649 ... O46043 37268618
    770077 8adj:B (2.508) BS01 LQX 3.2.1.143 GO:0004649 ... O46043 37268618
    770078 8adj:C (2.508) BS01 LQX 3.2.1.143 GO:0004649 ... O46043 37268618
    770079 8adl:A (2.95) BS01 ZN ? GO:0000324 ... Q08281 36289347
    770080 8adl:A (2.95) BS02 ZN ? GO:0000324 ... Q08281 36289347
    770081 8adl:A (2.95) BS03 ZN ? GO:0000324 ... Q08281 36289347
    770082 8adl:B (2.95) BS01 ZN ? GO:0005515 ... P38164 36289347
    770083 8adl:B (2.95) BS02 ZN ? GO:0005515 ... P38164 36289347
    770084 8adl:B (2.95) BS03 ZN ? GO:0005515 ... P38164 36289347
    770085 8adl:B (2.95) BS04 ZN ? GO:0005515 ... P38164 36289347
    770086 8adl:C (2.95) BS01 ZN ? GO:0000329 ... Q03897 36289347
    770087 8adl:C (2.95) BS02 ZN ? GO:0000329 ... Q03897 36289347
    770088 8adl:C (2.95) BS03 ZN ? GO:0000329 ... Q03897 36289347
    770089 8adl:G (2.95) BS01 ZN ? GO:0005515 ... P38164 36289347
    770090 8adl:G (2.95) BS02 ZN ? GO:0005515 ... P38164 36289347
    770091 8adl:G (2.95) BS03 ZN ? GO:0005515 ... P38164 36289347
    770092 8adl:G (2.95) BS04 ZN ? GO:0005515 ... P38164 36289347
    770093 8adl:I (2.95) BS01 ZN ? GO:0000324 ... Q08281 36289347
    770094 8adl:I (2.95) BS02 ZN ? GO:0000324 ... Q08281 36289347
    770095 8adl:I (2.95) BS03 ZN ? GO:0000324 ... Q08281 36289347
    770096 8adl:J (2.95) BS01 ZN ? GO:0005515 ... P38164 36289347
    770097 8adl:J (2.95) BS02 ZN ? GO:0005515 ... P38164 36289347
    770098 8adl:J (2.95) BS03 ZN ? GO:0005515 ... P38164 36289347
    770099 8adl:J (2.95) BS04 ZN ? GO:0005515 ... P38164 36289347
    770100 8adl:O (2.95) BS01 ZN ? GO:0005515 ... P38164 36289347
    770101 8adl:O (2.95) BS02 ZN ? GO:0005515 ... P38164 36289347
    770102 8adl:O (2.95) BS03 ZN ? GO:0005515 ... P38164 36289347
    770103 8adl:O (2.95) BS04 ZN ? GO:0005515 ... P38164 36289347
    770104 8adl:Q (2.95) BS01 ZN ? GO:0000329 ... Q03897 36289347
    770105 8adl:Q (2.95) BS02 ZN ? GO:0000329 ... Q03897 36289347
    770106 8adl:Q (2.95) BS03 ZN ? GO:0000329 ... Q03897 36289347
    770107 8adm:A (1.7) BS01 peptide ? GO:0001836 ... P31947 37252362
    770108 8adm:A (1.7) BS02 O6C ? GO:0001836 ... P31947 37252362
    770109 8adq:A (1.6) BS01 3PY ? GO:0003824 ... A0A9J9HGY6 36214476
    770110 8adq:A (1.6) BS02 3GR ? GO:0003824 ... A0A9J9HGY6 36214476
    770111 8adq:A (1.6) BS03 3GR ? GO:0003824 ... A0A9J9HGY6 36214476
    770112 8adq:A (1.6) BS04 MG ? GO:0003824 ... A0A9J9HGY6 36214476
    770113 8adr:A (1.92) BS01 LS9 1.14.-.- GO:0004497 ... A0A380DQV1 N/A
    770114 8adr:A (1.92) BS02 HEM 1.14.-.- GO:0004497 ... A0A380DQV1 N/A
    770115 8ae1:A (3.25) BS01 CA ? N/A Q9RRB6 35943982
    770116 8ae1:A (3.25) BS02 CA ? N/A Q9RRB6 35943982
    770117 8ae1:A (3.25) BS03 CA ? N/A Q9RRB6 35943982
    770118 8ae1:A (3.25) BS04 CA ? N/A Q9RRB6 35943982
    770119 8ae1:A (3.25) BS05 CA ? N/A Q9RRB6 35943982
    770120 8ae1:A (3.25) BS06 CA ? N/A Q9RRB6 35943982
    770121 8ae1:B (3.25) BS01 CA ? N/A Q9RRB6 35943982
    770122 8ae1:B (3.25) BS02 CA ? N/A Q9RRB6 35943982
    770123 8ae1:B (3.25) BS03 CA ? N/A Q9RRB6 35943982
    770124 8ae1:B (3.25) BS04 CA ? N/A Q9RRB6 35943982
    770125 8ae1:B (3.25) BS05 CA ? N/A Q9RRB6 35943982
    770126 8ae1:B (3.25) BS06 CA ? N/A Q9RRB6 35943982
    770127 8ae1:C (3.25) BS01 CA ? N/A Q9RRB6 35943982
    770128 8ae1:C (3.25) BS02 CA ? N/A Q9RRB6 35943982
    770129 8ae1:C (3.25) BS03 CA ? N/A Q9RRB6 35943982
    770130 8ae1:C (3.25) BS04 CA ? N/A Q9RRB6 35943982
    770131 8ae1:C (3.25) BS05 CA ? N/A Q9RRB6 35943982
    770132 8ae1:C (3.25) BS06 CA ? N/A Q9RRB6 35943982
    770133 8ae7:A (1.28) BS01 LVU 2.7.11.1 GO:0004672 ... P68400 36426237
    770134 8ae7:A (1.28) BS02 ADP 2.7.11.1 GO:0004672 ... P68400 36426237
    770135 8ae7:A (1.28) BS03 MG 2.7.11.1 GO:0004672 ... P68400 36426237
    770136 8ae8:A (1.92) BS01 HEM 1.14.-.- GO:0004497 ... A0A380DQV1 N/A
    770137 8ae8:A (1.92) BS02 LUU 1.14.-.- GO:0004497 ... A0A380DQV1 N/A
    770138 8ae9:A (0.95) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 N/A
    770139 8ae9:A (0.95) BS02 LZO 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 N/A
    770140 8aeb:A (1.83) BS01 35J 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 36796300
    770141 8aec:A (1.09) BS01 ATP 2.7.11.1 GO:0004672 ... P68400 36426237
    770142 8aec:A (1.09) BS02 LW3 2.7.11.1 GO:0004672 ... P68400 36426237
    770143 8aed:A (1.17) BS01 peptide N/A N/A N/A 37605043
    770144 8aed:B (1.17) BS01 peptide N/A N/A N/A 37605043
    770145 8aeh:AA1 (3.0) BS01 CA ? GO:0005576 ... O18873 N/A
    770146 8aei:A (1.74) BS01 ODM ? GO:0005549 ... O18874 N/A
    770147 8aei:B (1.74) BS01 ODM ? GO:0005549 ... O18874 N/A
    770148 8aej:A (1.84) BS01 LWE ? GO:0005549 ... H2B3G5 N/A
    770149 8aek:A (1.65) BS01 LVL 2.7.11.1 GO:0004672 ... P68400 36426237
    770150 8aek:A (1.65) BS02 ATP 2.7.11.1 GO:0004672 ... P68400 36426237
    770151 8ael:A (2.2) BS01 peptide ? GO:0001525 ... P07355
    P57105
    N/A
    770152 8ael:A (2.2) BS02 CA ? GO:0001525 ... P07355
    P57105
    N/A
    770153 8ael:A (2.2) BS03 CA ? GO:0001525 ... P07355
    P57105
    N/A
    770154 8ael:A (2.2) BS04 CA ? GO:0001525 ... P07355
    P57105
    N/A
    770155 8ael:A (2.2) BS05 CA ? GO:0001525 ... P07355
    P57105
    N/A
    770156 8aem:A (1.6) BS01 LVF 2.7.11.1 GO:0004672 ... P68400 36426237
    770157 8aem:A (1.6) BS02 ATP 2.7.11.1 GO:0004672 ... P68400 36426237
    770158 8aen:A (3.01) BS01 LWL 3.1.1.7 GO:0001507 ... P22303 36193860
    770159 8aen:A (3.01) BS02 ZN 3.1.1.7 GO:0001507 ... P22303 36193860
    770160 8aen:B (3.01) BS01 SIA 3.1.1.7 GO:0001507 ... P22303 36193860
    770161 8aen:B (3.01) BS02 LWL 3.1.1.7 GO:0001507 ... P22303 36193860
    770162 8aen:B (3.01) BS03 ZN 3.1.1.7 GO:0001507 ... P22303 36193860
    770163 8aen:B (3.01) BS04 MG 3.1.1.7 GO:0001507 ... P22303 36193860
    770164 8aen:B (3.01) BS05 MG 3.1.1.7 GO:0001507 ... P22303 36193860
    770165 8aen:B (3.01) BS06 MG 3.1.1.7 GO:0001507 ... P22303 36193860
    770166 8aer:A (1.77) BS01 MG ? N/A A9WIU3 37952891
    770167 8aer:A (1.77) BS02 MG ? N/A A9WIU3 37952891
    770168 8aeu:A (2.0) BS01 M0L 2.3.2.27 GO:0005634 ... Q00987 36602436
    770169 8aev:A (2.89) BS01 LWU 3.1.1.7 GO:0001507 ... P22303 36193860
    770170 8aev:B (2.89) BS01 MG 3.1.1.7 GO:0001507 ... P22303 36193860
    770171 8aev:B (2.89) BS02 MG 3.1.1.7 GO:0001507 ... P22303 36193860
    770172 8aev:B (2.89) BS03 MG 3.1.1.7 GO:0001507 ... P22303 36193860
    770173 8aez:A (2.574) BS01 MAN ? GO:0019031 ... K7YEW5 36878926
    770174 8af0:A (2.43) BS01 rna 3.1.27.- GO:0001525 ... P03950 36048083
    770175 8af0:A (2.43) BS02 rna 3.1.27.- GO:0001525 ... P03950 36048083
    770176 8af0:B (2.43) BS01 rna 3.1.27.- GO:0001525 ... P03950 36048083
    770177 8af1:A (1.57) BS01 ZN N/A GO:0004222 ... N/A 36555752
    770178 8af2:A (2.51) BS01 TRT 1.1.1.n12
    4.2.1.107
    4.2.1.119
    N/A P51659 38505507
    770179 8af2:A (2.51) BS02 TRT 1.1.1.n12
    4.2.1.107
    4.2.1.119
    N/A P51659 38505507
    770180 8af2:B (2.51) BS01 TRT 1.1.1.n12
    4.2.1.107
    4.2.1.119
    N/A P51659 38505507
    770181 8af3:A (1.52) BS01 TRT 1.1.1.n12
    4.2.1.107
    4.2.1.119
    N/A P51659 38505507
    770182 8afa:A (3.25) BS01 ASP ? GO:0005886 ... Q5JID0 37002226
    770183 8afa:B (3.25) BS01 ASP ? GO:0005886 ... Q5JID0 37002226
    770184 8afa:C (3.25) BS01 ASP ? GO:0005886 ... Q5JID0 37002226
    770185 8afb:A (1.12) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 36300829
    770186 8afb:A (1.12) BS02 LXD 3.6.5.2 GO:0003924 ... P01116 36300829
    770187 8afc:A (2.41) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 36300829
    770188 8afc:A (2.41) BS02 LXK 3.6.5.2 GO:0003924 ... P01116 36300829
    770189 8afc:B (2.41) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 36300829
    770190 8afd:A (1.633) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 36300829
    770191 8afd:A (1.633) BS02 2XO 3.6.5.2 GO:0003924 ... P01116 36300829
    770192 8afd:A (1.633) BS03 LXU 3.6.5.2 GO:0003924 ... P01116 36300829
    770193 8afd:B (1.633) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 36300829
    770194 8afd:B (1.633) BS02 2XO 3.6.5.2 GO:0003924 ... P01116 36300829
    770195 8afd:B (1.633) BS03 LXU 3.6.5.2 GO:0003924 ... P01116 36300829
    770196 8afd:C (1.633) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 36300829
    770197 8afd:C (1.633) BS02 2XO 3.6.5.2 GO:0003924 ... P01116 36300829
    770198 8afd:C (1.633) BS03 2XO 3.6.5.2 GO:0003924 ... P01116 36300829
    770199 8afd:D (1.633) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 36300829
    770200 8afd:D (1.633) BS02 2XO 3.6.5.2 GO:0003924 ... P01116 36300829

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).