SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    770401 8agu:B (2.7) BS01 rna ? GO:0000470 ... P26784 36804914
    770402 8agu:C (2.7) BS01 rna ? GO:0000448 ... P05740 36804914
    770403 8agu:C (2.7) BS02 rna ? GO:0000448 ... P05740 36804914
    770404 8agu:D (2.7) BS01 rna ? GO:0002181 ... P0CX49 36804914
    770405 8agu:E (2.7) BS01 rna ? GO:0002181 ... P0CX82 36804914
    770406 8agu:F (2.7) BS01 rna ? GO:0002181 ... P0CX23 36804914
    770407 8agu:F (2.7) BS02 rna ? GO:0002181 ... P0CX23 36804914
    770408 8agu:G (2.7) BS01 rna ? GO:0002181 ... Q02753 36804914
    770409 8agu:G (2.7) BS02 rna ? GO:0002181 ... Q02753 36804914
    770410 8agu:H (2.7) BS01 rna ? GO:0002181 ... P05749 36804914
    770411 8agu:I (2.7) BS01 rna ? GO:0002181 ... P0CX41 36804914
    770412 8agu:J (2.7) BS01 rna ? GO:0002181 ... P04449 36804914
    770413 8agu:K (2.7) BS01 rna ? GO:0000027 ... P04456 36804914
    770414 8agu:K (2.7) BS02 rna ? GO:0000027 ... P04456 36804914
    770415 8agu:L (2.7) BS01 rna ? GO:0002181 ... P05743 36804914
    770416 8agu:L (2.7) BS02 rna ? GO:0002181 ... P05743 36804914
    770417 8agu:M (2.7) BS01 rna ? GO:0002181 ... P0C2H6 36804914
    770418 8agu:N (2.7) BS01 rna ? GO:0002181 ... P02406 36804914
    770419 8agu:O (2.7) BS01 rna ? GO:0002181 ... P05747 36804914
    770420 8agu:P (2.7) BS01 rna ? GO:0002181 ... P14120 36804914
    770421 8agu:Q (2.7) BS01 rna ? GO:0002181 ... P0C2H8 36804914
    770422 8agu:R (2.7) BS01 rna ? GO:0002181 ... P38061 36804914
    770423 8agu:R (2.7) BS02 MG ? GO:0002181 ... P38061 36804914
    770424 8agu:S (2.7) BS01 rna ? GO:0000027 ... P05744 36804914
    770425 8agu:T (2.7) BS01 rna ? GO:0002181 ... P87262 36804914
    770426 8agu:T (2.7) BS02 ZN ? GO:0002181 ... P87262 36804914
    770427 8agu:U (2.7) BS01 rna ? GO:0000463 ... P0CX84 36804914
    770428 8agu:U (2.7) BS02 rna ? GO:0000463 ... P0CX84 36804914
    770429 8agu:V (2.7) BS01 rna ? GO:0000470 ... P05745 36804914
    770430 8agu:W (2.7) BS01 rna ? GO:0000448 ... P49166 36804914
    770431 8agu:W (2.7) BS02 rna ? GO:0000448 ... P49166 36804914
    770432 8agu:W (2.7) BS03 ZN ? GO:0000448 ... P49166 36804914
    770433 8agu:X (2.7) BS01 rna ? GO:0002181 ... P49167 36804914
    770434 8agu:Y (2.7) BS01 rna ? GO:0002181 ... P04650 36804914
    770435 8agu:Y (2.7) BS02 rna ? GO:0002181 ... P04650 36804914
    770436 8agu:Z (2.7) BS01 rna ? GO:0000027 ... P0CH08 36804914
    770437 8agu:Z (2.7) BS02 ZN ? GO:0000027 ... P0CH08 36804914
    770438 8agu:a (2.7) BS01 rna ? GO:0000049 ... Q12532 36804914
    770439 8agu:a (2.7) BS02 rna ? GO:0000049 ... Q12532 36804914
    770440 8agu:b (2.7) BS01 rna ? GO:0002181 ... P0CX27 36804914
    770441 8agu:b (2.7) BS02 ZN ? GO:0002181 ... P0CX27 36804914
    770442 8agu:c (2.7) BS01 rna ? GO:0002181 ... P0CX25 36804914
    770443 8agu:c (2.7) BS02 ZN ? GO:0002181 ... P0CX25 36804914
    770444 8agu:e (2.7) BS01 rna 2.3.2.27 GO:0000781 ... Q04781 36804914
    770445 8agu:e (2.7) BS02 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    770446 8agu:e (2.7) BS03 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    770447 8agu:g (2.7) BS01 rna ? GO:0000054 ... Q12522 36804914
    770448 8agu:j (2.7) BS01 rna ? GO:0002181 ... P0CX45 36804914
    770449 8agu:j (2.7) BS02 MG ? GO:0002181 ... P0CX45 36804914
    770450 8agu:k (2.7) BS01 rna ? GO:0000027 ... P14126 36804914
    770451 8agu:k (2.7) BS02 MG ? GO:0000027 ... P14126 36804914
    770452 8agu:l (2.7) BS01 rna ? GO:0002181 ... P10664 36804914
    770453 8agu:l (2.7) BS02 rna ? GO:0002181 ... P10664 36804914
    770454 8agu:l (2.7) BS03 peptide ? GO:0002181 ... P10664 36804914
    770455 8agu:m (2.7) BS01 rna ? GO:0000027 ... P26321 36804914
    770456 8agu:m (2.7) BS02 rna ? GO:0000027 ... P26321 36804914
    770457 8agu:n (2.7) BS01 rna ? GO:0000027 ... P05739 36804914
    770458 8agu:o (2.7) BS01 rna ? GO:0000463 ... P05737 36804914
    770459 8agu:o (2.7) BS02 rna ? GO:0000463 ... P05737 36804914
    770460 8agu:p (2.7) BS01 rna ? GO:0000470 ... P17076 36804914
    770461 8agu:p (2.7) BS02 rna ? GO:0000470 ... P17076 36804914
    770462 8agu:q (2.7) BS01 rna ? GO:0002181 ... P05738 36804914
    770463 8agu:r (2.7) BS01 rna ? GO:0000027 ... P41805 36804914
    770464 8agu:r (2.7) BS02 rna ? GO:0000027 ... P41805 36804914
    770465 8agu:s (2.7) BS01 rna ? GO:0000027 ... P0C0W9 36804914
    770466 8agu:s (2.7) BS02 rna ? GO:0000027 ... P0C0W9 36804914
    770467 8agu:s (2.7) BS03 rna ? GO:0000027 ... P0C0W9 36804914
    770468 8agu:t (2.7) BS01 rna ? GO:0002181 ... Q12690 36804914
    770469 8agu:t (2.7) BS02 rna ? GO:0002181 ... Q12690 36804914
    770470 8agu:u (2.7) BS01 rna ? GO:0000027 ... P36105 36804914
    770471 8agu:v (2.7) BS01 rna ? GO:0002182 ... P23301 36804914
    770472 8agu:w (2.7) BS01 rna ? GO:0000055 ... P0CX43 36804914
    770473 8agu:z (2.7) BS01 rna ? GO:0000027 ... P0CX54 36804914
    770474 8agv:0 (2.6) BS01 rna ? GO:0000027 ... P05317 36804914
    770475 8agv:A (2.6) BS01 rna ? GO:0000470 ... P05748 36804914
    770476 8agv:A (2.6) BS02 rna ? GO:0000470 ... P05748 36804914
    770477 8agv:B (2.6) BS01 rna ? GO:0000470 ... P26784 36804914
    770478 8agv:C (2.6) BS01 rna ? GO:0000448 ... P05740 36804914
    770479 8agv:C (2.6) BS02 rna ? GO:0000448 ... P05740 36804914
    770480 8agv:D (2.6) BS01 rna ? GO:0002181 ... P0CX49 36804914
    770481 8agv:E (2.6) BS01 rna ? GO:0002181 ... P0CX82 36804914
    770482 8agv:F (2.6) BS01 rna ? GO:0002181 ... P0CX23 36804914
    770483 8agv:F (2.6) BS02 rna ? GO:0002181 ... P0CX23 36804914
    770484 8agv:G (2.6) BS01 rna ? GO:0002181 ... Q02753 36804914
    770485 8agv:G (2.6) BS02 rna ? GO:0002181 ... Q02753 36804914
    770486 8agv:H (2.6) BS01 rna ? GO:0002181 ... P05749 36804914
    770487 8agv:I (2.6) BS01 rna ? GO:0002181 ... P0CX41 36804914
    770488 8agv:J (2.6) BS01 rna ? GO:0002181 ... P04449 36804914
    770489 8agv:K (2.6) BS01 rna ? GO:0000027 ... P04456 36804914
    770490 8agv:K (2.6) BS02 rna ? GO:0000027 ... P04456 36804914
    770491 8agv:L (2.6) BS01 rna ? GO:0002181 ... P05743 36804914
    770492 8agv:L (2.6) BS02 rna ? GO:0002181 ... P05743 36804914
    770493 8agv:M (2.6) BS01 rna ? GO:0002181 ... P0C2H6 36804914
    770494 8agv:N (2.6) BS01 rna ? GO:0002181 ... P02406 36804914
    770495 8agv:O (2.6) BS01 rna ? GO:0002181 ... P05747 36804914
    770496 8agv:P (2.6) BS01 rna ? GO:0002181 ... P14120 36804914
    770497 8agv:Q (2.6) BS01 rna ? GO:0002181 ... P0C2H8 36804914
    770498 8agv:R (2.6) BS01 rna ? GO:0002181 ... P38061 36804914
    770499 8agv:R (2.6) BS02 MG ? GO:0002181 ... P38061 36804914
    770500 8agv:S (2.6) BS01 rna ? GO:0000027 ... P05744 36804914
    770501 8agv:T (2.6) BS01 rna ? GO:0002181 ... P87262 36804914
    770502 8agv:T (2.6) BS02 ZN ? GO:0002181 ... P87262 36804914
    770503 8agv:U (2.6) BS01 rna ? GO:0000463 ... P0CX84 36804914
    770504 8agv:U (2.6) BS02 rna ? GO:0000463 ... P0CX84 36804914
    770505 8agv:V (2.6) BS01 rna ? GO:0000470 ... P05745 36804914
    770506 8agv:W (2.6) BS01 rna ? GO:0000448 ... P49166 36804914
    770507 8agv:W (2.6) BS02 rna ? GO:0000448 ... P49166 36804914
    770508 8agv:W (2.6) BS03 ZN ? GO:0000448 ... P49166 36804914
    770509 8agv:X (2.6) BS01 rna ? GO:0002181 ... P49167 36804914
    770510 8agv:Y (2.6) BS01 rna ? GO:0002181 ... P04650 36804914
    770511 8agv:Y (2.6) BS02 rna ? GO:0002181 ... P04650 36804914
    770512 8agv:Z (2.6) BS01 rna ? GO:0000027 ... P0CH08 36804914
    770513 8agv:Z (2.6) BS02 ZN ? GO:0000027 ... P0CH08 36804914
    770514 8agv:a (2.6) BS01 rna ? GO:0000049 ... Q12532 36804914
    770515 8agv:a (2.6) BS02 rna ? GO:0000049 ... Q12532 36804914
    770516 8agv:a (2.6) BS03 rna ? GO:0000049 ... Q12532 36804914
    770517 8agv:b (2.6) BS01 rna ? GO:0002181 ... P0CX27 36804914
    770518 8agv:b (2.6) BS02 ZN ? GO:0002181 ... P0CX27 36804914
    770519 8agv:c (2.6) BS01 rna ? GO:0002181 ... P0CX25 36804914
    770520 8agv:c (2.6) BS02 ZN ? GO:0002181 ... P0CX25 36804914
    770521 8agv:e (2.6) BS01 rna 2.3.2.27 GO:0000781 ... Q04781 36804914
    770522 8agv:e (2.6) BS02 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    770523 8agv:e (2.6) BS03 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    770524 8agv:g (2.6) BS01 rna ? GO:0000054 ... Q12522 36804914
    770525 8agv:j (2.6) BS01 rna ? GO:0002181 ... P0CX45 36804914
    770526 8agv:j (2.6) BS02 MG ? GO:0002181 ... P0CX45 36804914
    770527 8agv:k (2.6) BS01 rna ? GO:0000027 ... P14126 36804914
    770528 8agv:k (2.6) BS02 MG ? GO:0000027 ... P14126 36804914
    770529 8agv:l (2.6) BS01 rna ? GO:0002181 ... P10664 36804914
    770530 8agv:l (2.6) BS02 rna ? GO:0002181 ... P10664 36804914
    770531 8agv:l (2.6) BS03 peptide ? GO:0002181 ... P10664 36804914
    770532 8agv:m (2.6) BS01 rna ? GO:0000027 ... P26321 36804914
    770533 8agv:m (2.6) BS02 rna ? GO:0000027 ... P26321 36804914
    770534 8agv:n (2.6) BS01 rna ? GO:0000027 ... P05739 36804914
    770535 8agv:o (2.6) BS01 rna ? GO:0000463 ... P05737 36804914
    770536 8agv:o (2.6) BS02 rna ? GO:0000463 ... P05737 36804914
    770537 8agv:p (2.6) BS01 rna ? GO:0000470 ... P17076 36804914
    770538 8agv:p (2.6) BS02 rna ? GO:0000470 ... P17076 36804914
    770539 8agv:q (2.6) BS01 rna ? GO:0002181 ... P05738 36804914
    770540 8agv:r (2.6) BS01 rna ? GO:0000027 ... P41805 36804914
    770541 8agv:r (2.6) BS02 rna ? GO:0000027 ... P41805 36804914
    770542 8agv:s (2.6) BS01 rna ? GO:0000027 ... P0C0W9 36804914
    770543 8agv:s (2.6) BS02 rna ? GO:0000027 ... P0C0W9 36804914
    770544 8agv:s (2.6) BS03 rna ? GO:0000027 ... P0C0W9 36804914
    770545 8agv:t (2.6) BS01 rna ? GO:0002181 ... Q12690 36804914
    770546 8agv:t (2.6) BS02 rna ? GO:0002181 ... Q12690 36804914
    770547 8agv:u (2.6) BS01 rna ? GO:0000027 ... P36105 36804914
    770548 8agv:v (2.6) BS01 rna ? GO:0002182 ... P23301 36804914
    770549 8agv:w (2.6) BS01 rna ? GO:0000055 ... P0CX43 36804914
    770550 8agv:z (2.6) BS01 rna ? GO:0000027 ... P0CX54 36804914
    770551 8agw:0 (2.6) BS01 rna ? GO:0000027 ... P05317 36804914
    770552 8agw:A (2.6) BS01 rna ? GO:0000470 ... P05748 36804914
    770553 8agw:A (2.6) BS02 rna ? GO:0000470 ... P05748 36804914
    770554 8agw:B (2.6) BS01 rna ? GO:0000470 ... P26784 36804914
    770555 8agw:C (2.6) BS01 rna ? GO:0000448 ... P05740 36804914
    770556 8agw:C (2.6) BS02 rna ? GO:0000448 ... P05740 36804914
    770557 8agw:D (2.6) BS01 rna ? GO:0002181 ... P0CX49 36804914
    770558 8agw:E (2.6) BS01 rna ? GO:0002181 ... P0CX82 36804914
    770559 8agw:F (2.6) BS01 rna ? GO:0002181 ... P0CX23 36804914
    770560 8agw:F (2.6) BS02 rna ? GO:0002181 ... P0CX23 36804914
    770561 8agw:G (2.6) BS01 rna ? GO:0002181 ... Q02753 36804914
    770562 8agw:G (2.6) BS02 rna ? GO:0002181 ... Q02753 36804914
    770563 8agw:H (2.6) BS01 rna ? GO:0002181 ... P05749 36804914
    770564 8agw:I (2.6) BS01 rna ? GO:0002181 ... P0CX41 36804914
    770565 8agw:J (2.6) BS01 rna ? GO:0002181 ... P04449 36804914
    770566 8agw:K (2.6) BS01 rna ? GO:0000027 ... P04456 36804914
    770567 8agw:K (2.6) BS02 rna ? GO:0000027 ... P04456 36804914
    770568 8agw:L (2.6) BS01 rna ? GO:0002181 ... P05743 36804914
    770569 8agw:L (2.6) BS02 rna ? GO:0002181 ... P05743 36804914
    770570 8agw:M (2.6) BS01 rna ? GO:0002181 ... P0C2H6 36804914
    770571 8agw:N (2.6) BS01 rna ? GO:0002181 ... P02406 36804914
    770572 8agw:O (2.6) BS01 rna ? GO:0002181 ... P05747 36804914
    770573 8agw:P (2.6) BS01 rna ? GO:0002181 ... P14120 36804914
    770574 8agw:Q (2.6) BS01 rna ? GO:0002181 ... P0C2H8 36804914
    770575 8agw:R (2.6) BS01 rna ? GO:0002181 ... P38061 36804914
    770576 8agw:R (2.6) BS02 MG ? GO:0002181 ... P38061 36804914
    770577 8agw:S (2.6) BS01 rna ? GO:0000027 ... P05744 36804914
    770578 8agw:T (2.6) BS01 rna ? GO:0002181 ... P87262 36804914
    770579 8agw:T (2.6) BS02 ZN ? GO:0002181 ... P87262 36804914
    770580 8agw:U (2.6) BS01 rna ? GO:0000463 ... P0CX84 36804914
    770581 8agw:U (2.6) BS02 rna ? GO:0000463 ... P0CX84 36804914
    770582 8agw:V (2.6) BS01 rna ? GO:0000470 ... P05745 36804914
    770583 8agw:W (2.6) BS01 rna ? GO:0000448 ... P49166 36804914
    770584 8agw:W (2.6) BS02 rna ? GO:0000448 ... P49166 36804914
    770585 8agw:W (2.6) BS03 ZN ? GO:0000448 ... P49166 36804914
    770586 8agw:X (2.6) BS01 rna ? GO:0002181 ... P49167 36804914
    770587 8agw:Y (2.6) BS01 rna ? GO:0002181 ... P04650 36804914
    770588 8agw:Y (2.6) BS02 rna ? GO:0002181 ... P04650 36804914
    770589 8agw:Z (2.6) BS01 rna ? GO:0000027 ... P0CH08 36804914
    770590 8agw:Z (2.6) BS02 ZN ? GO:0000027 ... P0CH08 36804914
    770591 8agw:a (2.6) BS01 rna ? GO:0000049 ... Q12532 36804914
    770592 8agw:a (2.6) BS02 rna ? GO:0000049 ... Q12532 36804914
    770593 8agw:a (2.6) BS03 rna ? GO:0000049 ... Q12532 36804914
    770594 8agw:b (2.6) BS01 rna ? GO:0002181 ... P0CX27 36804914
    770595 8agw:b (2.6) BS02 ZN ? GO:0002181 ... P0CX27 36804914
    770596 8agw:c (2.6) BS01 rna ? GO:0002181 ... P0CX25 36804914
    770597 8agw:c (2.6) BS02 ZN ? GO:0002181 ... P0CX25 36804914
    770598 8agw:e (2.6) BS01 rna 2.3.2.27 GO:0000781 ... Q04781 36804914
    770599 8agw:e (2.6) BS02 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    770600 8agw:e (2.6) BS03 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).