SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    770601 8agw:g (2.6) BS01 rna ? GO:0000054 ... Q12522 36804914
    770602 8agw:j (2.6) BS01 rna ? GO:0002181 ... P0CX45 36804914
    770603 8agw:j (2.6) BS02 MG ? GO:0002181 ... P0CX45 36804914
    770604 8agw:k (2.6) BS01 rna ? GO:0000027 ... P14126 36804914
    770605 8agw:k (2.6) BS02 MG ? GO:0000027 ... P14126 36804914
    770606 8agw:l (2.6) BS01 rna ? GO:0002181 ... P10664 36804914
    770607 8agw:l (2.6) BS02 rna ? GO:0002181 ... P10664 36804914
    770608 8agw:l (2.6) BS03 peptide ? GO:0002181 ... P10664 36804914
    770609 8agw:m (2.6) BS01 rna ? GO:0000027 ... P26321 36804914
    770610 8agw:m (2.6) BS02 rna ? GO:0000027 ... P26321 36804914
    770611 8agw:n (2.6) BS01 rna ? GO:0000027 ... P05739 36804914
    770612 8agw:o (2.6) BS01 rna ? GO:0000463 ... P05737 36804914
    770613 8agw:o (2.6) BS02 rna ? GO:0000463 ... P05737 36804914
    770614 8agw:p (2.6) BS01 rna ? GO:0000470 ... P17076 36804914
    770615 8agw:p (2.6) BS02 rna ? GO:0000470 ... P17076 36804914
    770616 8agw:q (2.6) BS01 rna ? GO:0002181 ... P05738 36804914
    770617 8agw:r (2.6) BS01 rna ? GO:0000027 ... P41805 36804914
    770618 8agw:r (2.6) BS02 rna ? GO:0000027 ... P41805 36804914
    770619 8agw:r (2.6) BS03 rna ? GO:0000027 ... P41805 36804914
    770620 8agw:s (2.6) BS01 rna ? GO:0000027 ... P0C0W9 36804914
    770621 8agw:s (2.6) BS02 rna ? GO:0000027 ... P0C0W9 36804914
    770622 8agw:s (2.6) BS03 rna ? GO:0000027 ... P0C0W9 36804914
    770623 8agw:t (2.6) BS01 rna ? GO:0002181 ... Q12690 36804914
    770624 8agw:t (2.6) BS02 rna ? GO:0002181 ... Q12690 36804914
    770625 8agw:u (2.6) BS01 rna ? GO:0000027 ... P36105 36804914
    770626 8agw:w (2.6) BS01 rna ? GO:0000055 ... P0CX43 36804914
    770627 8agw:z (2.6) BS01 rna ? GO:0000027 ... P0CX53 36804914
    770628 8agx:0 (2.4) BS01 rna ? GO:0000027 ... P05317 36804914
    770629 8agx:A (2.4) BS01 rna ? GO:0000470 ... P05748 36804914
    770630 8agx:A (2.4) BS02 rna ? GO:0000470 ... P05748 36804914
    770631 8agx:B (2.4) BS01 rna ? GO:0000470 ... P26784 36804914
    770632 8agx:C (2.4) BS01 rna ? GO:0000448 ... P05740 36804914
    770633 8agx:C (2.4) BS02 rna ? GO:0000448 ... P05740 36804914
    770634 8agx:D (2.4) BS01 rna ? GO:0002181 ... P0CX49 36804914
    770635 8agx:E (2.4) BS01 rna ? GO:0002181 ... P0CX82 36804914
    770636 8agx:F (2.4) BS01 rna ? GO:0002181 ... P0CX23 36804914
    770637 8agx:F (2.4) BS02 rna ? GO:0002181 ... P0CX23 36804914
    770638 8agx:G (2.4) BS01 rna ? GO:0002181 ... Q02753 36804914
    770639 8agx:G (2.4) BS02 rna ? GO:0002181 ... Q02753 36804914
    770640 8agx:H (2.4) BS01 rna ? GO:0002181 ... P05749 36804914
    770641 8agx:I (2.4) BS01 rna ? GO:0002181 ... P0CX41 36804914
    770642 8agx:J (2.4) BS01 rna ? GO:0002181 ... P04449 36804914
    770643 8agx:K (2.4) BS01 rna ? GO:0000027 ... P04456 36804914
    770644 8agx:K (2.4) BS02 rna ? GO:0000027 ... P04456 36804914
    770645 8agx:L (2.4) BS01 rna ? GO:0002181 ... P05743 36804914
    770646 8agx:L (2.4) BS02 rna ? GO:0002181 ... P05743 36804914
    770647 8agx:M (2.4) BS01 rna ? GO:0002181 ... P0C2H6 36804914
    770648 8agx:N (2.4) BS01 rna ? GO:0002181 ... P02406 36804914
    770649 8agx:O (2.4) BS01 rna ? GO:0002181 ... P05747 36804914
    770650 8agx:P (2.4) BS01 rna ? GO:0002181 ... P14120 36804914
    770651 8agx:Q (2.4) BS01 rna ? GO:0002181 ... P0C2H8 36804914
    770652 8agx:R (2.4) BS01 rna ? GO:0002181 ... P38061 36804914
    770653 8agx:R (2.4) BS02 MG ? GO:0002181 ... P38061 36804914
    770654 8agx:S (2.4) BS01 rna ? GO:0000027 ... P05744 36804914
    770655 8agx:T (2.4) BS01 rna ? GO:0002181 ... P87262 36804914
    770656 8agx:T (2.4) BS02 ZN ? GO:0002181 ... P87262 36804914
    770657 8agx:U (2.4) BS01 rna ? GO:0000463 ... P0CX84 36804914
    770658 8agx:U (2.4) BS02 rna ? GO:0000463 ... P0CX84 36804914
    770659 8agx:V (2.4) BS01 rna ? GO:0000470 ... P05745 36804914
    770660 8agx:W (2.4) BS01 rna ? GO:0000448 ... P49166 36804914
    770661 8agx:W (2.4) BS02 rna ? GO:0000448 ... P49166 36804914
    770662 8agx:W (2.4) BS03 ZN ? GO:0000448 ... P49166 36804914
    770663 8agx:X (2.4) BS01 rna ? GO:0002181 ... P49167 36804914
    770664 8agx:Y (2.4) BS01 rna ? GO:0002181 ... P04650 36804914
    770665 8agx:Y (2.4) BS02 rna ? GO:0002181 ... P04650 36804914
    770666 8agx:Z (2.4) BS01 rna ? GO:0000027 ... P0CH08 36804914
    770667 8agx:Z (2.4) BS02 ZN ? GO:0000027 ... P0CH08 36804914
    770668 8agx:a (2.4) BS01 rna ? GO:0000049 ... Q12532 36804914
    770669 8agx:a (2.4) BS02 rna ? GO:0000049 ... Q12532 36804914
    770670 8agx:a (2.4) BS03 rna ? GO:0000049 ... Q12532 36804914
    770671 8agx:b (2.4) BS01 rna ? GO:0002181 ... P0CX27 36804914
    770672 8agx:b (2.4) BS02 ZN ? GO:0002181 ... P0CX27 36804914
    770673 8agx:c (2.4) BS01 rna ? GO:0002181 ... P0CX25 36804914
    770674 8agx:c (2.4) BS02 ZN ? GO:0002181 ... P0CX25 36804914
    770675 8agx:e (2.4) BS01 rna 2.3.2.27 GO:0000781 ... Q04781 36804914
    770676 8agx:e (2.4) BS02 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    770677 8agx:e (2.4) BS03 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    770678 8agx:j (2.4) BS01 rna ? GO:0002181 ... P0CX45 36804914
    770679 8agx:j (2.4) BS02 MG ? GO:0002181 ... P0CX45 36804914
    770680 8agx:k (2.4) BS01 rna ? GO:0000027 ... P14126 36804914
    770681 8agx:k (2.4) BS02 MG ? GO:0000027 ... P14126 36804914
    770682 8agx:l (2.4) BS01 rna ? GO:0002181 ... P10664 36804914
    770683 8agx:l (2.4) BS02 rna ? GO:0002181 ... P10664 36804914
    770684 8agx:l (2.4) BS03 peptide ? GO:0002181 ... P10664 36804914
    770685 8agx:m (2.4) BS01 rna ? GO:0000027 ... P26321 36804914
    770686 8agx:m (2.4) BS02 rna ? GO:0000027 ... P26321 36804914
    770687 8agx:n (2.4) BS01 rna ? GO:0000027 ... P05739 36804914
    770688 8agx:o (2.4) BS01 rna ? GO:0000463 ... P05737 36804914
    770689 8agx:o (2.4) BS02 rna ? GO:0000463 ... P05737 36804914
    770690 8agx:p (2.4) BS01 rna ? GO:0000470 ... P17076 36804914
    770691 8agx:p (2.4) BS02 rna ? GO:0000470 ... P17076 36804914
    770692 8agx:q (2.4) BS01 rna ? GO:0002181 ... P05738 36804914
    770693 8agx:r (2.4) BS01 rna ? GO:0000027 ... P41805 36804914
    770694 8agx:r (2.4) BS02 rna ? GO:0000027 ... P41805 36804914
    770695 8agx:r (2.4) BS03 rna ? GO:0000027 ... P41805 36804914
    770696 8agx:s (2.4) BS01 rna ? GO:0000027 ... P0C0W9 36804914
    770697 8agx:s (2.4) BS02 rna ? GO:0000027 ... P0C0W9 36804914
    770698 8agx:s (2.4) BS03 rna ? GO:0000027 ... P0C0W9 36804914
    770699 8agx:t (2.4) BS01 rna ? GO:0002181 ... Q12690 36804914
    770700 8agx:t (2.4) BS02 rna ? GO:0002181 ... Q12690 36804914
    770701 8agx:u (2.4) BS01 rna ? GO:0000027 ... P36105 36804914
    770702 8agx:v (2.4) BS01 rna ? GO:0002182 ... P23301 36804914
    770703 8agx:w (2.4) BS01 rna ? GO:0000055 ... P0CX43 36804914
    770704 8agx:z (2.4) BS01 rna ? GO:0000027 ... P0CX53 36804914
    770705 8agy:A (1.5) BS01 peptide N/A N/A N/A N/A
    770706 8agz:0 (2.6) BS01 rna ? GO:0000027 ... P05317 36804914
    770707 8agz:A (2.6) BS01 rna ? GO:0000470 ... P05748 36804914
    770708 8agz:A (2.6) BS02 rna ? GO:0000470 ... P05748 36804914
    770709 8agz:B (2.6) BS01 rna ? GO:0000470 ... P26784 36804914
    770710 8agz:C (2.6) BS01 rna ? GO:0000448 ... P05740 36804914
    770711 8agz:C (2.6) BS02 rna ? GO:0000448 ... P05740 36804914
    770712 8agz:D (2.6) BS01 rna ? GO:0002181 ... P0CX49 36804914
    770713 8agz:E (2.6) BS01 rna ? GO:0002181 ... P0CX82 36804914
    770714 8agz:F (2.6) BS01 rna ? GO:0002181 ... P0CX23 36804914
    770715 8agz:F (2.6) BS02 rna ? GO:0002181 ... P0CX23 36804914
    770716 8agz:G (2.6) BS01 rna ? GO:0002181 ... Q02753 36804914
    770717 8agz:G (2.6) BS02 rna ? GO:0002181 ... Q02753 36804914
    770718 8agz:H (2.6) BS01 rna ? GO:0002181 ... P05749 36804914
    770719 8agz:I (2.6) BS01 rna ? GO:0002181 ... P0CX41 36804914
    770720 8agz:J (2.6) BS01 rna ? GO:0002181 ... P04449 36804914
    770721 8agz:K (2.6) BS01 rna ? GO:0000027 ... P04456 36804914
    770722 8agz:K (2.6) BS02 rna ? GO:0000027 ... P04456 36804914
    770723 8agz:L (2.6) BS01 rna ? GO:0002181 ... P05743 36804914
    770724 8agz:L (2.6) BS02 rna ? GO:0002181 ... P05743 36804914
    770725 8agz:M (2.6) BS01 rna ? GO:0002181 ... P0C2H6 36804914
    770726 8agz:N (2.6) BS01 rna ? GO:0002181 ... P02406 36804914
    770727 8agz:O (2.6) BS01 rna ? GO:0002181 ... P05747 36804914
    770728 8agz:P (2.6) BS01 rna ? GO:0002181 ... P14120 36804914
    770729 8agz:Q (2.6) BS01 rna ? GO:0002181 ... P0C2H8 36804914
    770730 8agz:R (2.6) BS01 rna ? GO:0002181 ... P38061 36804914
    770731 8agz:R (2.6) BS02 MG ? GO:0002181 ... P38061 36804914
    770732 8agz:S (2.6) BS01 rna ? GO:0000027 ... P05744 36804914
    770733 8agz:T (2.6) BS01 rna ? GO:0002181 ... P87262 36804914
    770734 8agz:T (2.6) BS02 ZN ? GO:0002181 ... P87262 36804914
    770735 8agz:U (2.6) BS01 rna ? GO:0000463 ... P0CX84 36804914
    770736 8agz:U (2.6) BS02 rna ? GO:0000463 ... P0CX84 36804914
    770737 8agz:V (2.6) BS01 rna ? GO:0000470 ... P05745 36804914
    770738 8agz:W (2.6) BS01 rna ? GO:0000448 ... P49166 36804914
    770739 8agz:W (2.6) BS02 rna ? GO:0000448 ... P49166 36804914
    770740 8agz:W (2.6) BS03 ZN ? GO:0000448 ... P49166 36804914
    770741 8agz:X (2.6) BS01 rna ? GO:0002181 ... P49167 36804914
    770742 8agz:Y (2.6) BS01 rna ? GO:0002181 ... P04650 36804914
    770743 8agz:Y (2.6) BS02 rna ? GO:0002181 ... P04650 36804914
    770744 8agz:Z (2.6) BS01 rna ? GO:0000027 ... P0CH08 36804914
    770745 8agz:Z (2.6) BS02 ZN ? GO:0000027 ... P0CH08 36804914
    770746 8agz:a (2.6) BS01 rna ? GO:0000049 ... Q12532 36804914
    770747 8agz:a (2.6) BS02 rna ? GO:0000049 ... Q12532 36804914
    770748 8agz:a (2.6) BS03 rna ? GO:0000049 ... Q12532 36804914
    770749 8agz:b (2.6) BS01 rna ? GO:0002181 ... P0CX27 36804914
    770750 8agz:b (2.6) BS02 ZN ? GO:0002181 ... P0CX27 36804914
    770751 8agz:c (2.6) BS01 rna ? GO:0002181 ... P0CX25 36804914
    770752 8agz:c (2.6) BS02 ZN ? GO:0002181 ... P0CX25 36804914
    770753 8agz:e (2.6) BS01 rna 2.3.2.27 GO:0000781 ... Q04781 36804914
    770754 8agz:e (2.6) BS02 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    770755 8agz:e (2.6) BS03 ZN 2.3.2.27 GO:0000781 ... Q04781 36804914
    770756 8agz:g (2.6) BS01 rna ? GO:0000054 ... Q12522 36804914
    770757 8agz:j (2.6) BS01 rna ? GO:0002181 ... P0CX45 36804914
    770758 8agz:j (2.6) BS02 MG ? GO:0002181 ... P0CX45 36804914
    770759 8agz:k (2.6) BS01 rna ? GO:0000027 ... P14126 36804914
    770760 8agz:k (2.6) BS02 MG ? GO:0000027 ... P14126 36804914
    770761 8agz:l (2.6) BS01 rna ? GO:0002181 ... P10664 36804914
    770762 8agz:l (2.6) BS02 rna ? GO:0002181 ... P10664 36804914
    770763 8agz:l (2.6) BS03 peptide ? GO:0002181 ... P10664 36804914
    770764 8agz:m (2.6) BS01 rna ? GO:0000027 ... P26321 36804914
    770765 8agz:m (2.6) BS02 rna ? GO:0000027 ... P26321 36804914
    770766 8agz:n (2.6) BS01 rna ? GO:0000027 ... P05739 36804914
    770767 8agz:o (2.6) BS01 rna ? GO:0000463 ... P05737 36804914
    770768 8agz:o (2.6) BS02 rna ? GO:0000463 ... P05737 36804914
    770769 8agz:p (2.6) BS01 rna ? GO:0000470 ... P17076 36804914
    770770 8agz:p (2.6) BS02 rna ? GO:0000470 ... P17076 36804914
    770771 8agz:q (2.6) BS01 rna ? GO:0002181 ... P05738 36804914
    770772 8agz:r (2.6) BS01 rna ? GO:0000027 ... P41805 36804914
    770773 8agz:r (2.6) BS02 rna ? GO:0000027 ... P41805 36804914
    770774 8agz:r (2.6) BS03 rna ? GO:0000027 ... P41805 36804914
    770775 8agz:s (2.6) BS01 rna ? GO:0000027 ... P0C0W9 36804914
    770776 8agz:s (2.6) BS02 rna ? GO:0000027 ... P0C0W9 36804914
    770777 8agz:s (2.6) BS03 rna ? GO:0000027 ... P0C0W9 36804914
    770778 8agz:t (2.6) BS01 rna ? GO:0002181 ... Q12690 36804914
    770779 8agz:t (2.6) BS02 rna ? GO:0002181 ... Q12690 36804914
    770780 8agz:u (2.6) BS01 rna ? GO:0000027 ... P36105 36804914
    770781 8agz:v (2.6) BS01 rna ? GO:0002182 ... P23301 36804914
    770782 8agz:w (2.6) BS01 rna ? GO:0000055 ... P0CX43 36804914
    770783 8agz:z (2.6) BS01 rna ? GO:0000027 ... P0CX53 36804914
    770784 8ah3:A (1.4) BS01 CA ? N/A F5IZG2 N/A
    770785 8ah3:A (1.4) BS02 CA ? N/A F5IZG2 N/A
    770786 8ahc:A (1.504) BS01 M2O ? N/A Q9H8M2 36649575
    770787 8ahc:B (1.504) BS01 M2O ? N/A Q9H8M2 36649575
    770788 8ahe:A (2.108) BS01 M2U 5.1.3.14 GO:0003824 ... A0A348ACF3 36426238
    770789 8ahe:B (2.108) BS01 M2U 5.1.3.14 GO:0003824 ... A0A348ACF3 36426238
    770790 8ahf:A (2.271) BS01 M3U 5.1.3.14 GO:0003824 ... A0A348ACF3 36426238
    770791 8ahf:B (2.271) BS01 M3U 5.1.3.14 GO:0003824 ... A0A348ACF3 36426238
    770792 8ahg:A (1.885) BS01 M4I 2.7.11.1 GO:0004672 ... O96013 36426238
    770793 8ahh:A (2.037) BS01 M4X 2.7.11.1 GO:0004672 ... O96013 36426238
    770794 8ahi:A (2.69) BS01 M56 2.7.11.1 GO:0004672 ... O96013 36426238
    770795 8ahm:A (2.42) BS01 GTP 3.6.5.- GO:0000226 ... P81947 36281761
    770796 8ahm:A (2.42) BS02 CA 3.6.5.- GO:0000226 ... P81947 36281761
    770797 8ahm:B (2.42) BS01 GDP ? GO:0000226 ... Q6B856 36281761
    770798 8ahm:C (2.42) BS01 GTP 3.6.5.- GO:0000226 ... P81947 36281761
    770799 8ahm:C (2.42) BS02 CA 3.6.5.- GO:0000226 ... P81947 36281761
    770800 8ahm:D (2.42) BS01 GDP ? GO:0000226 ... Q6B856 36281761

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).