SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    770801 8b4m:B (3.04) BS02 212 4.2.3.201
    4.2.3.202
    4.2.3.203    		 GO:0010333 ... D5SK09 N/A
    770802 8b4m:D (3.04) BS01 MG 4.2.3.201
    4.2.3.202
    4.2.3.203    		 GO:0010333 ... D5SK09 N/A
    770803 8b4m:D (3.04) BS02 MG 4.2.3.201
    4.2.3.202
    4.2.3.203    		 GO:0010333 ... D5SK09 N/A
    770804 8b4m:D (3.04) BS03 212 4.2.3.201
    4.2.3.202
    4.2.3.203    		 GO:0010333 ... D5SK09 N/A
    770805 8b4m:E (3.04) BS01 MG 4.2.3.201
    4.2.3.202
    4.2.3.203    		 GO:0010333 ... D5SK09 N/A
    770806 8b4m:E (3.04) BS02 212 4.2.3.201
    4.2.3.202
    4.2.3.203    		 GO:0010333 ... D5SK09 N/A
    770807 8b4m:F (3.04) BS01 MG 4.2.3.201
    4.2.3.202
    4.2.3.203    		 GO:0010333 ... D5SK09 N/A
    770808 8b4m:F (3.04) BS02 212 4.2.3.201
    4.2.3.202
    4.2.3.203    		 GO:0010333 ... D5SK09 N/A
    770809 8b4n:AAA (1.6) BS01 PEB ? GO:0009507 ... P11392 36643001
    770810 8b4n:AAA (1.6) BS02 PEB ? GO:0009507 ... P11392 36643001
    770811 8b4n:AAA (1.6) BS03 PEB ? GO:0009507 ... P11392 36643001
    770812 8b4n:AAA (1.6) BS04 PEB ? GO:0009507 ... P11392 36643001
    770813 8b4n:BBB (1.6) BS01 PEB ? GO:0009507 ... P11393 36643001
    770814 8b4n:BBB (1.6) BS02 PEB ? GO:0009507 ... P11393 36643001
    770815 8b4n:BbB (1.6) BS01 PEB ? N/A N/A 36643001
    770816 8b4n:BbB (1.6) BS02 MEN ? N/A N/A 36643001
    770817 8b4n:BbB (1.6) BS03 PEB ? N/A N/A 36643001
    770818 8b4n:BbB (1.6) BS04 PEB ? N/A N/A 36643001
    770819 8b4n:CCC (1.6) BS01 PEB ? GO:0009507 ... P11392 36643001
    770820 8b4n:CCC (1.6) BS02 PEB ? GO:0009507 ... P11392 36643001
    770821 8b4n:CCC (1.6) BS03 PEB ? GO:0009507 ... P11392 36643001
    770822 8b4n:CCC (1.6) BS04 PEB ? GO:0009507 ... P11392 36643001
    770823 8b4n:DDD (1.6) BS01 PEB ? GO:0009507 ... P11393 36643001
    770824 8b4n:DDD (1.6) BS02 PEB ? GO:0009507 ... P11393 36643001
    770825 8b4n:DbD (1.6) BS01 PEB ? N/A N/A 36643001
    770826 8b4n:DbD (1.6) BS02 MEN ? N/A N/A 36643001
    770827 8b4n:DbD (1.6) BS03 PEB ? N/A N/A 36643001
    770828 8b4n:DbD (1.6) BS04 PEB ? N/A N/A 36643001
    770829 8b4o:A (2.0) BS01 HDD ? GO:0005886 ... Q9KWL8 N/A
    770830 8b4o:A (2.0) BS02 HEB ? GO:0005886 ... Q9KWL8 N/A
    770831 8b4o:A (2.0) BS03 HEB ? GO:0005886 ... Q9KWL8 N/A
    770832 8b4q:A (1.4) BS01 peptide ? GO:0000122 ... P31947 36926879
    770833 8b4q:A (1.4) BS02 MG ? GO:0000122 ... P31947 36926879
    770834 8b4q:A (1.4) BS03 OYI ? GO:0000122 ... P31947 36926879
    770835 8b4t:A (1.45) BS01 P9F 3.4.22.1 GO:0006508 ... P07858 N/A
    770836 8b4v:A (1.6) BS01 BEN 3.4.21.75 GO:0004252 ... P09958 38385828
    770837 8b4v:A (1.6) BS02 CA 3.4.21.75 GO:0004252 ... P09958 38385828
    770838 8b4v:A (1.6) BS03 CA 3.4.21.75 GO:0004252 ... P09958 38385828
    770839 8b4v:A (1.6) BS04 CA 3.4.21.75 GO:0004252 ... P09958 38385828
    770840 8b4w:A (1.6) BS01 F05 3.4.21.75 GO:0004252 ... P09958 38385828
    770841 8b4w:A (1.6) BS02 F05 3.4.21.75 GO:0004252 ... P09958 38385828
    770842 8b4w:A (1.6) BS03 CA 3.4.21.75 GO:0004252 ... P09958 38385828
    770843 8b4w:A (1.6) BS04 CA 3.4.21.75 GO:0004252 ... P09958 38385828
    770844 8b4w:A (1.6) BS05 CA 3.4.21.75 GO:0004252 ... P09958 38385828
    770845 8b4x:A (1.6) BS01 peptide 3.4.21.75 GO:0004252 ... P09958 38385828
    770846 8b4x:A (1.6) BS02 CA 3.4.21.75 GO:0004252 ... P09958 38385828
    770847 8b4x:A (1.6) BS03 CA 3.4.21.75 GO:0004252 ... P09958 38385828
    770848 8b4x:A (1.6) BS04 CA 3.4.21.75 GO:0004252 ... P09958 38385828
    770849 8b50:H (1.67) BS01 P0M N/A N/A N/A N/A
    770850 8b50:L (1.67) BS01 P0M N/A N/A N/A N/A
    770851 8b51:A (1.84) BS01 SFG 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... Q5WPU5 36334638
    770852 8b51:B (1.84) BS01 SFG 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... Q5WPU5 36334638
    770853 8b51:B (1.84) BS02 GLY 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... Q5WPU5 36334638
    770854 8b52:A (2.22) BS01 SAH 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... Q5WPU5 36334638
    770855 8b52:B (2.22) BS01 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... Q5WPU5 36334638
    770856 8b53:A (1.25) BS01 OVV 3.4.21.36 GO:0004252 ... P00772 N/A
    770857 8b53:A (1.25) BS02 CA 3.4.21.36 GO:0004252 ... P00772 N/A
    770858 8b54:A (2.6) BS01 P2V 2.7.11.22 GO:0000082 ... P24941 36931035
    770859 8b54:C (2.6) BS01 P2V 2.7.11.22 GO:0000082 ... P24941 36931035
    770860 8b56:A (1.823) BS01 OZI 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 36475694
    770861 8b56:B (1.823) BS01 OZI 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 36475694
    770862 8b57:A (2.42) BS01 BMA ? GO:0006508 ... A0A3F3RXI7 38059672
    770863 8b57:A (2.42) BS02 MAN ? GO:0006508 ... A0A3F3RXI7 38059672
    770864 8b57:A (2.42) BS03 MAN ? GO:0006508 ... A0A3F3RXI7 38059672
    770865 8b57:A (2.42) BS04 MAN ? GO:0006508 ... A0A3F3RXI7 38059672
    770866 8b57:A (2.42) BS05 MAN ? GO:0006508 ... A0A3F3RXI7 38059672
    770867 8b58:A (1.1) BS01 peptide 5.2.1.8 GO:0000413 ... B9PS61 36653744
    770868 8b58:B (1.1) BS01 peptide 5.2.1.8 GO:0000413 ... B9PS61 36653744
    770869 8b5a:A (1.92) BS01 peptide ? N/A Q15059 36585954
    770870 8b5b:B (1.92) BS01 peptide ? N/A O60885 36585954
    770871 8b5b:C (1.92) BS01 peptide ? N/A O60885 36585954
    770872 8b5c:A (1.58) BS01 peptide ? N/A O60885 36585954
    770873 8b5d:A (2.0) BS01 GLN ? GO:0015276 ... A0A2X0R690 39090964
    770874 8b5d:B (2.0) BS01 GLN ? GO:0015276 ... A0A2X0R690 39090964
    770875 8b5e:A (1.6) BS01 ARG ? GO:0015276 ... A0A2X0R690 39090964
    770876 8b5e:B (1.6) BS01 ARG ? GO:0015276 ... A0A2X0R690 39090964
    770877 8b5f:A (1.7) BS01 P9U 3.4.22.1 GO:0006508 ... P07858 N/A
    770878 8b5g:AAA (1.619) BS01 P4M ? N/A P25440 36378954
    770879 8b5h:AAA (1.603) BS01 P4X ? N/A P25440 36378954
    770880 8b5i:AAA (1.604) BS01 P0U ? N/A P25440 36378954
    770881 8b5j:AAA (1.603) BS01 P3R ? N/A P25440 36378954
    770882 8b5l:A (2.86) BS01 rna ? GO:0002181 ... G1TT27 36867692
    770883 8b5l:A (2.86) BS02 MG ? GO:0002181 ... G1TT27 36867692
    770884 8b5l:B (2.86) BS01 rna ? GO:0003723 ... G1TL06 36867692
    770885 8b5l:C (2.86) BS01 rna ? GO:0003735 ... G1SVW5 36867692
    770886 8b5l:C (2.86) BS02 rna ? GO:0003735 ... G1SVW5 36867692
    770887 8b5l:D (2.86) BS01 rna ? GO:0000027 ... P19949 36867692
    770888 8b5l:D (2.86) BS02 rna ? GO:0000027 ... P19949 36867692
    770889 8b5l:E (2.86) BS01 rna ? GO:0000027 ... G1SKF7 36867692
    770890 8b5l:F (2.86) BS01 rna ? GO:0000463 ... G1SV32 36867692
    770891 8b5l:F (2.86) BS02 rna ? GO:0000463 ... G1SV32 36867692
    770892 8b5l:G (2.86) BS01 rna ? GO:0003723 ... G1STW0 36867692
    770893 8b5l:G (2.86) BS02 rna ? GO:0003723 ... G1STW0 36867692
    770894 8b5l:H (2.86) BS01 rna ? GO:0002181 ... G1SWI6 36867692
    770895 8b5l:I (2.86) BS01 rna ? GO:0003735 ... B7NZQ2 36867692
    770896 8b5l:I (2.86) BS02 rna ? GO:0003735 ... B7NZQ2 36867692
    770897 8b5l:J (2.86) BS01 rna ? GO:0003735 ... G1TUB8 36867692
    770898 8b5l:J (2.86) BS02 rna ? GO:0003735 ... G1TUB8 36867692
    770899 8b5l:L (2.86) BS01 rna ? GO:0003723 ... G1TKB3 36867692
    770900 8b5l:L (2.86) BS02 rna ? GO:0003723 ... G1TKB3 36867692
    770901 8b5l:M (2.86) BS01 rna ? GO:0003723 ... G1SZ12 36867692
    770902 8b5l:N (2.86) BS01 rna ? GO:0002181 ... G1T0C1 36867692
    770903 8b5l:N (2.86) BS02 rna ? GO:0002181 ... G1T0C1 36867692
    770904 8b5l:O (2.86) BS01 rna ? GO:0003729 ... G1TVS8 36867692
    770905 8b5l:P (2.86) BS01 rna ? GO:0003735 ... G1SCJ6 36867692
    770906 8b5l:P (2.86) BS02 rna ? GO:0003735 ... G1SCJ6 36867692
    770907 8b5l:Q (2.86) BS01 rna ? GO:0003723 ... G1TFE0 36867692
    770908 8b5l:R (2.86) BS01 rna ? GO:0003723 ... G1TYL6 36867692
    770909 8b5l:S (2.86) BS01 rna ? GO:0003735 ... G1TTY7 36867692
    770910 8b5l:S (2.86) BS02 rna ? GO:0003735 ... G1TTY7 36867692
    770911 8b5l:T (2.86) BS01 rna ? GO:0003735 ... G1SHQ2 36867692
    770912 8b5l:T (2.86) BS02 rna ? GO:0003735 ... G1SHQ2 36867692
    770913 8b5l:U (2.86) BS01 rna ? GO:0003735 ... G1TSG1 36867692
    770914 8b5l:V (2.86) BS01 rna ? GO:0003735 ... G1T6D1 36867692
    770915 8b5l:W (2.86) BS01 rna ? GO:0000027 ... G1SE28 36867692
    770916 8b5l:X (2.86) BS01 rna ? GO:0003735 ... G1SE76 36867692
    770917 8b5l:X (2.86) BS02 rna ? GO:0003735 ... G1SE76 36867692
    770918 8b5l:Y (2.86) BS01 rna ? GO:0003723 ... G1SQH0 36867692
    770919 8b5l:Y (2.86) BS02 rna ? GO:0003723 ... G1SQH0 36867692
    770920 8b5l:Z (2.86) BS01 rna ? GO:0003735 ... G1TXF6 36867692
    770921 8b5l:a (2.86) BS01 rna ? GO:0003735 ... G1SNY0 36867692
    770922 8b5l:b (2.86) BS01 rna ? GO:0002181 ... G1SGR6 36867692
    770923 8b5l:c (2.86) BS01 rna ? GO:0003723 ... G1TDL2 36867692
    770924 8b5l:d (2.86) BS01 rna ? GO:0003735 ... G1SHG0 36867692
    770925 8b5l:e (2.86) BS01 rna ? GO:0003735 ... G1TUN8 36867692
    770926 8b5l:f (2.86) BS01 rna ? GO:0000049 ... G1SF08 36867692
    770927 8b5l:g (2.86) BS01 rna ? GO:0003735 ... G1TXG5 36867692
    770928 8b5l:g (2.86) BS02 ZN ? GO:0003735 ... G1TXG5 36867692
    770929 8b5l:h (2.86) BS01 rna ? GO:0000463 ... G1SIT5 36867692
    770930 8b5l:h (2.86) BS02 rna ? GO:0000463 ... G1SIT5 36867692
    770931 8b5l:i (2.86) BS01 rna ? GO:0003735 ... G1TTQ5 36867692
    770932 8b5l:j (2.86) BS01 rna ? GO:0003735 ... U3KPD5 36867692
    770933 8b5l:j (2.86) BS02 rna ? GO:0003735 ... U3KPD5 36867692
    770934 8b5l:j (2.86) BS03 ZN ? GO:0003735 ... U3KPD5 36867692
    770935 8b5l:k (2.86) BS01 rna ? GO:0003735 ... G1U001 36867692
    770936 8b5l:l (2.86) BS01 rna ? GO:0003735 ... G1TTN1 36867692
    770937 8b5l:l (2.86) BS02 rna ? GO:0003735 ... G1TTN1 36867692
    770938 8b5l:m (2.86) BS01 rna ? GO:0003735 ... P0DXC2 36867692
    770939 8b5l:m (2.86) BS02 ZN ? GO:0003735 ... P0DXC2 36867692
    770940 8b5l:o (2.86) BS01 rna ? GO:0003735 ... G1T040 36867692
    770941 8b5l:o (2.86) BS02 ZN ? GO:0003735 ... G1T040 36867692
    770942 8b5l:p (2.86) BS01 rna ? GO:0003735 ... G1SY53 36867692
    770943 8b5l:p (2.86) BS02 ZN ? GO:0003735 ... G1SY53 36867692
    770944 8b5l:r (2.86) BS01 rna ? GO:0003735 ... G1U7L1 36867692
    770945 8b5l:s (2.86) BS01 rna ? GO:0005262 ... A0A5F9CHB7 36867692
    770946 8b5m:A (0.97) BS01 5OV 3.2.1.113 GO:0004571 ... B0SWV2 N/A
    770947 8b5p:A (1.4) BS01 peptide ? GO:0000122 ... P31947 36926879
    770948 8b5p:A (1.4) BS02 MG ? GO:0000122 ... P31947 36926879
    770949 8b5p:A (1.4) BS03 OQ3 ? GO:0000122 ... P31947 36926879
    770950 8b5q:A (2.0) BS01 U ? GO:0000166 ... Q9HUF6 37716703
    770951 8b5q:B (2.0) BS01 U ? GO:0000166 ... Q9HUF6 37716703
    770952 8b5r:A (6.1) BS01 peptide 3.6.4.6 GO:0000502 ... P55072 37264685
    770953 8b5r:B (6.1) BS01 peptide 3.6.4.6 GO:0000502 ... P55072 37264685
    770954 8b5r:B (6.1) BS02 peptide 3.6.4.6 GO:0000502 ... P55072 37264685
    770955 8b5r:C (6.1) BS01 peptide 3.6.4.6 GO:0000502 ... P55072 37264685
    770956 8b5s:A (1.95) BS01 UDP ? GO:0000166 ... Q9HUF6 37716703
    770957 8b5s:B (1.95) BS01 UPG ? GO:0000166 ... Q9HUF6 37716703
    770958 8b5v:A (1.6) BS01 MG 5.4.2.8 GO:0004615 ... Q4E4A3 N/A
    770959 8b5v:B (1.6) BS01 MG 5.4.2.8 GO:0004615 ... Q4E4A3 N/A
    770960 8b5w:A (1.8) BS01 ZN 2.3.2.27 N/A Q5T4S7 38182926
    770961 8b5x:A (1.98) BS01 peptide ? N/A O94901 38291267
    770962 8b5x:B (1.98) BS01 peptide ? N/A O94901 38291267
    770963 8b5x:C (1.98) BS01 peptide ? N/A O94901 38291267
    770964 8b5y:A (1.83) BS01 P8O 3.1.3.48 GO:0004725 ... Q06124 36793438
    770965 8b5y:B (1.83) BS01 P8O 3.1.3.48 GO:0004725 ... Q06124 36793438
    770966 8b61:A (1.81) BS01 P7W ? N/A Q5LDF1 37246607
    770967 8b61:B (1.81) BS01 P7W ? N/A Q5LDF1 37246607
    770968 8b62:A (2.02) BS01 GDU ? GO:0000166 ... Q9HUF6 37716703
    770969 8b62:B (2.02) BS01 GDU ? GO:0000166 ... Q9HUF6 37716703
    770970 8b63:A (2.2) BS01 UD2 ? GO:0000166 ... Q9HUF6 37716703
    770971 8b63:B (2.2) BS01 UDP ? GO:0000166 ... Q9HUF6 37716703
    770972 8b64:A (2.589) BS01 BCL ? GO:0005886 ... P02950 36738736
    770973 8b64:A (2.589) BS02 SPO ? GO:0005886 ... P02950 36738736
    770974 8b64:A (2.589) BS03 BCL ? GO:0005886 ... P02950 36738736
    770975 8b64:B (2.589) BS01 BCL ? GO:0005886 ... P02950 36738736
    770976 8b64:B (2.589) BS02 BCL ? GO:0005886 ... P02950 36738736
    770977 8b64:B (2.589) BS03 SPO ? GO:0005886 ... P02950 36738736
    770978 8b64:B (2.589) BS04 SPO ? GO:0005886 ... P02950 36738736
    770979 8b64:D (2.589) BS01 BCL ? GO:0005886 ... P02950 36738736
    770980 8b64:D (2.589) BS02 BCL ? GO:0005886 ... P02950 36738736
    770981 8b64:D (2.589) BS03 SPO ? GO:0005886 ... P02950 36738736
    770982 8b64:D (2.589) BS04 BCL ? GO:0005886 ... P02950 36738736
    770983 8b64:D (2.589) BS05 SPO ? GO:0005886 ... P02950 36738736
    770984 8b64:E (2.589) BS01 BCL ? GO:0005886 ... P02950 36738736
    770985 8b64:E (2.589) BS02 BCL ? GO:0005886 ... P02950 36738736
    770986 8b64:E (2.589) BS03 SPO ? GO:0005886 ... P02950 36738736
    770987 8b64:E (2.589) BS04 SPO ? GO:0005886 ... P02950 36738736
    770988 8b64:F (2.589) BS01 SPO ? GO:0005886 ... P02950 36738736
    770989 8b64:F (2.589) BS02 BCL ? GO:0005886 ... P02950 36738736
    770990 8b64:F (2.589) BS03 BCL ? GO:0005886 ... P02950 36738736
    770991 8b64:F (2.589) BS04 SPO ? GO:0005886 ... P02950 36738736
    770992 8b64:G (2.589) BS01 BCL ? GO:0005886 ... P02950 36738736
    770993 8b64:G (2.589) BS02 BCL ? GO:0005886 ... P02950 36738736
    770994 8b64:G (2.589) BS03 SPO ? GO:0005886 ... P02950 36738736
    770995 8b64:G (2.589) BS04 SPO ? GO:0005886 ... P02950 36738736
    770996 8b64:I (2.589) BS01 BCL ? GO:0005886 ... P02950 36738736
    770997 8b64:I (2.589) BS02 BCL ? GO:0005886 ... P02950 36738736
    770998 8b64:I (2.589) BS03 SPO ? GO:0005886 ... P02950 36738736
    770999 8b64:I (2.589) BS04 BCL ? GO:0005886 ... P02950 36738736
    771000 8b64:I (2.589) BS05 SPO ? GO:0005886 ... P02950 36738736
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).