SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 3856 3857 3858 3859 3860 3861 3862 3863 3864 3865 3866 3867 3868 3869 3870 3871 3872 3873 3874 3875 3876 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    773001 8bd6:A (4.1) BS02 dna ? N/A A0A8X6EH11 36435179
    773002 8bd6:A (4.1) BS03 dna ? N/A A0A8X6EH11 36435179
    773003 8bd6:R (4.1) BS01 dna ? N/A A0A8J0PCL3 36435179
    773004 8bd6:R (4.1) BS02 ATP ? N/A A0A8J0PCL3 36435179
    773005 8bd6:S (4.1) BS01 ATP ? N/A A0A8J0PCL3 36435179
    773006 8bd6:T (4.1) BS01 ATP ? N/A A0A8J0PCL3 36435179
    773007 8bd6:T (4.1) BS02 ATP ? N/A A0A8J0PCL3 36435179
    773008 8bd6:U (4.1) BS01 ATP ? N/A A0A8J0PCL3 36435179
    773009 8bd6:V (4.1) BS01 ATP ? N/A A0A8J0PCL3 36435179
    773010 8bd6:W (4.1) BS01 ATP ? N/A A0A8J0PCL3 36435179
    773011 8bd6:X (4.1) BS01 dna ? N/A A0A8J0PCL3 36435179
    773012 8bd6:X (4.1) BS02 ATP ? N/A A0A8J0PCL3 36435179
    773013 8bd6:Y (4.1) BS01 ATP ? N/A A0A8J0PCL3 36435179
    773014 8bd6:Z (4.1) BS01 ATP ? N/A A0A8J0PCL3 36435179
    773015 8bd6:Z (4.1) BS02 MG ? N/A A0A8J0PCL3 36435179
    773016 8bd8:A (3.1) BS01 QCU 2.3.2.27 N/A Q9UPN9 36430693
    773017 8bd8:A (3.1) BS02 ZN 2.3.2.27 N/A Q9UPN9 36430693
    773018 8bd8:A (3.1) BS03 ZN 2.3.2.27 N/A Q9UPN9 36430693
    773019 8bd9:A (3.2) BS01 QCU 2.3.2.27 N/A Q9UPN9 36430693
    773020 8bd9:A (3.2) BS02 ZN 2.3.2.27 N/A Q9UPN9 36430693
    773021 8bd9:A (3.2) BS03 ZN 2.3.2.27 N/A Q9UPN9 36430693
    773022 8bdb:A (1.7) BS01 MG 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773023 8bdb:A (1.7) BS02 CAP 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773024 8bdb:A (1.7) BS03 BCT 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773025 8bdb:A (1.7) BS04 BCT 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773026 8bdb:A (1.7) BS05 BCT 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773027 8bdb:C (1.7) BS01 MG 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773028 8bdb:C (1.7) BS02 CAP 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773029 8bdb:C (1.7) BS03 BCT 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773030 8bdb:C (1.7) BS04 BCT 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773031 8bdb:E (1.7) BS01 MG 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773032 8bdb:E (1.7) BS02 CAP 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773033 8bdb:E (1.7) BS03 BCT 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773034 8bdb:E (1.7) BS04 BCT 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773035 8bdb:G (1.7) BS01 MG 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773036 8bdb:G (1.7) BS02 CAP 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773037 8bdb:G (1.7) BS03 BCT 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773038 8bdb:G (1.7) BS04 BCT 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773039 8bdb:I (1.7) BS01 MG 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773040 8bdb:I (1.7) BS02 CAP 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773041 8bdb:I (1.7) BS03 BCT 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773042 8bdb:I (1.7) BS04 BCT 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773043 8bdb:K (1.7) BS01 MG 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773044 8bdb:K (1.7) BS02 CAP 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773045 8bdb:K (1.7) BS03 BCT 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773046 8bdb:L (1.7) BS01 BCT ? GO:0009507 ... A7UM68 37291398
    773047 8bdb:M (1.7) BS01 MG 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773048 8bdb:M (1.7) BS02 CAP 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773049 8bdb:M (1.7) BS03 BCT 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773050 8bdb:M (1.7) BS04 BCT 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773051 8bdb:M (1.7) BS05 BCT 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773052 8bdb:N (1.7) BS01 BCT ? GO:0009507 ... A7UM68 37291398
    773053 8bdb:O (1.7) BS01 MG 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773054 8bdb:O (1.7) BS02 CAP 4.1.1.39 GO:0000287 ... A7UM67 37291398
    773055 8bdc:A (2.65) BS01 Y01 ? GO:0005216 ... Q7Z2W7 37857704
    773056 8bdc:A (2.65) BS02 Y01 ? GO:0005216 ... Q7Z2W7 37857704
    773057 8bdc:B (2.65) BS01 Y01 ? GO:0005216 ... Q7Z2W7 37857704
    773058 8bdc:B (2.65) BS02 Y01 ? GO:0005216 ... Q7Z2W7 37857704
    773059 8bdc:C (2.65) BS01 Y01 ? GO:0005216 ... Q7Z2W7 37857704
    773060 8bdc:C (2.65) BS02 Y01 ? GO:0005216 ... Q7Z2W7 37857704
    773061 8bdc:D (2.65) BS01 Y01 ? GO:0005216 ... Q7Z2W7 37857704
    773062 8bdc:D (2.65) BS02 Y01 ? GO:0005216 ... Q7Z2W7 37857704
    773063 8bde:A (1.902) BS01 GTP 3.6.5.- GO:0000226 ... P81947 36876916
    773064 8bde:A (1.902) BS02 CA 3.6.5.- GO:0000226 ... P81947 36876916
    773065 8bde:B (1.902) BS01 GDP ? GO:0000226 ... Q6B856 36876916
    773066 8bde:C (1.902) BS01 GTP 3.6.5.- GO:0000226 ... P81947 36876916
    773067 8bde:C (1.902) BS02 CA 3.6.5.- GO:0000226 ... P81947 36876916
    773068 8bde:D (1.902) BS01 GDP ? GO:0000226 ... Q6B856 36876916
    773069 8bde:D (1.902) BS02 R3Q ? GO:0000226 ... Q6B856 36876916
    773070 8bde:F (1.902) BS01 MG N/A GO:0036211 ... N/A 36876916
    773071 8bde:F (1.902) BS02 ACP N/A GO:0036211 ... N/A 36876916
    773072 8bdf:A (1.95) BS01 GTP 3.6.5.- GO:0000226 ... P81947 36876916
    773073 8bdf:A (1.95) BS02 CA 3.6.5.- GO:0000226 ... P81947 36876916
    773074 8bdf:B (1.95) BS01 GDP ? GO:0000226 ... Q6B856 36876916
    773075 8bdf:B (1.95) BS02 R42 ? GO:0000226 ... Q6B856 36876916
    773076 8bdf:C (1.95) BS01 GTP 3.6.5.- GO:0000226 ... P81947 36876916
    773077 8bdf:D (1.95) BS01 GDP ? GO:0000226 ... Q6B856 36876916
    773078 8bdf:D (1.95) BS02 R42 ? GO:0000226 ... Q6B856 36876916
    773079 8bdf:F (1.95) BS01 ACP N/A GO:0036211 ... N/A 36876916
    773080 8bdf:F (1.95) BS02 MG N/A GO:0036211 ... N/A 36876916
    773081 8bdg:A (2.35) BS01 GTP 3.6.5.- GO:0000226 ... P81947 36876916
    773082 8bdg:A (2.35) BS02 CA 3.6.5.- GO:0000226 ... P81947 36876916
    773083 8bdg:B (2.35) BS01 GDP ? GO:0000226 ... Q6B856 36876916
    773084 8bdg:B (2.35) BS02 R3T ? GO:0000226 ... Q6B856 36876916
    773085 8bdg:C (2.35) BS01 GTP 3.6.5.- GO:0000226 ... P81947 36876916
    773086 8bdg:D (2.35) BS01 GDP ? GO:0000226 ... Q6B856 36876916
    773087 8bdg:D (2.35) BS02 R3T ? GO:0000226 ... Q6B856 36876916
    773088 8bdg:F (2.35) BS01 MG N/A GO:0036211 ... N/A 36876916
    773089 8bdi:C (2.108) BS01 QF7 ? N/A P40337 36749883
    773090 8bdi:F (2.108) BS01 QF7 ? N/A P40337 36749883
    773091 8bdi:I (2.108) BS01 QF7 ? N/A P40337 36749883
    773092 8bdi:L (2.108) BS01 QF7 ? N/A P40337 36749883
    773093 8bdj:C (2.02) BS01 QE0 ? N/A P40337 36749883
    773094 8bdj:F (2.02) BS01 QE0 ? N/A P40337 36749883
    773095 8bdj:I (2.02) BS01 QE0 ? N/A P40337 36749883
    773096 8bdj:L (2.02) BS01 QE0 ? N/A P40337 36749883
    773097 8bdl:C (2.295) BS01 QF3 ? N/A P40337 36749883
    773098 8bdl:F (2.295) BS01 QF3 ? N/A P40337 36749883
    773099 8bdl:I (2.295) BS01 QF3 ? N/A P40337 36749883
    773100 8bdl:L (2.295) BS01 QF3 ? N/A P40337 36749883
    773101 8bdm:C (2.021) BS01 QE9 ? N/A P40337 36749883
    773102 8bdm:F (2.021) BS01 QE9 ? N/A P40337 36749883
    773103 8bdm:I (2.021) BS01 QE9 ? N/A P40337 36749883
    773104 8bdm:L (2.021) BS01 QE9 ? N/A P40337 36749883
    773105 8bdn:C (2.76) BS01 QFR ? N/A P40337 36749883
    773106 8bdn:F (2.76) BS01 QFR ? N/A P40337 36749883
    773107 8bdn:I (2.76) BS01 QFR ? N/A P40337 36749883
    773108 8bdn:L (2.76) BS01 QFR ? N/A P40337 36749883
    773109 8bdo:C (2.8) BS01 QFF ? N/A P40337 36749883
    773110 8bdo:F (2.8) BS01 QFF ? N/A P40337 36749883
    773111 8bdr:A (2.7) BS01 rna 3.1.-.- GO:0003723 ... Q5V8Z9 36596301
    773112 8bdr:B (2.7) BS01 rna 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    773113 8bdr:B (2.7) BS02 rna 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    773114 8bdr:B (2.7) BS03 rna 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    773115 8bdr:B (2.7) BS04 MG 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    773116 8bdr:C (2.7) BS01 rna ? GO:0001172 ... Q5V8X3 36596301
    773117 8bdr:C (2.7) BS02 rna ? GO:0001172 ... Q5V8X3 36596301
    773118 8bdr:C (2.7) BS03 GTA ? GO:0001172 ... Q5V8X3 36596301
    773119 8bds:C (1.72) BS01 QIY ? N/A P40337 36749883
    773120 8bds:D (1.72) BS01 QIY ? N/A O60885 36749883
    773121 8bdt:A (2.7) BS01 QLX ? N/A O60885 36749883
    773122 8bdt:D (2.7) BS01 QLX ? N/A P40337 36749883
    773123 8bdt:E (2.7) BS01 QLX ? N/A O60885 36749883
    773124 8bdt:H (2.7) BS01 QLX ? N/A P40337 36749883
    773125 8bdx:A (2.93) BS01 QIY ? N/A O60885 36749883
    773126 8bdx:D (2.93) BS01 QIY ? N/A P40337 36749883
    773127 8bdx:E (2.93) BS01 QIY ? N/A O60885 36749883
    773128 8bdx:H (2.93) BS01 QIY ? N/A P40337 36749883
    773129 8bdy:A (3.05) BS01 QCU 2.3.2.27 N/A Q9UPN9 36430693
    773130 8bdy:A (3.05) BS02 ZN 2.3.2.27 N/A Q9UPN9 36430693
    773131 8bdy:A (3.05) BS03 ZN 2.3.2.27 N/A Q9UPN9 36430693
    773132 8be0:A (2.34) BS01 rna 3.1.-.- GO:0003723 ... Q5V8Z9 36596301
    773133 8be0:B (2.34) BS01 rna 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    773134 8be0:B (2.34) BS02 rna 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    773135 8be0:B (2.34) BS03 rna 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    773136 8be0:B (2.34) BS04 MG 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    773137 8be0:B (2.34) BS05 MG 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    773138 8be0:C (2.34) BS01 rna ? GO:0001172 ... Q5V8X3 36596301
    773139 8be0:C (2.34) BS02 rna ? GO:0001172 ... Q5V8X3 36596301
    773140 8be0:C (2.34) BS03 GTA ? GO:0001172 ... Q5V8X3 36596301
    773141 8be3:A (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 39043660
    773142 8be3:R (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 39043660
    773143 8be6:S (2.8988) BS01 peptide ? GO:0005085 ... Q07889 37067463
    773144 8be7:S (3.0) BS01 peptide ? GO:0005085 ... Q07889 37067463
    773145 8be8:S (2.4) BS01 peptide ? GO:0005085 ... Q07889 37067463
    773146 8be9:S (2.51) BS01 peptide ? GO:0005085 ... Q07889 37067463
    773147 8bea:S (2.47) BS01 peptide ? GO:0005085 ... Q07889 37067463
    773148 8beb:C (3.18) BS01 QIK ? N/A P40337 36749883
    773149 8beb:D (3.18) BS01 QIK ? N/A O60885 36749883
    773150 8bec:A (1.7) BS01 BMA N/A N/A N/A N/A
    773151 8bec:A (1.7) BS02 MAN N/A N/A N/A N/A
    773152 8bec:B (1.7) BS01 MAN ? N/A P0DTC2 N/A
    773153 8bec:C (1.7) BS01 MAN N/A N/A N/A N/A
    773154 8bec:D (1.7) BS01 MAN ? N/A P0DTC2 N/A
    773155 8bed:E (2.03) BS01 FES 7.1.1.2 GO:0005739 ... O22769 36585502
    773156 8bed:F (2.03) BS01 FMN 7.1.1.2 GO:0005739 ... Q9FNN5 36585502
    773157 8bed:F (2.03) BS02 SF4 7.1.1.2 GO:0005739 ... Q9FNN5 36585502
    773158 8bed:G (2.03) BS01 peptide 7.1.1.2 GO:0005739 ... Q9FGI6 36585502
    773159 8bed:G (2.03) BS02 peptide 7.1.1.2 GO:0005739 ... Q9FGI6 36585502
    773160 8bed:G (2.03) BS03 FES 7.1.1.2 GO:0005739 ... Q9FGI6 36585502
    773161 8bed:G (2.03) BS04 SF4 7.1.1.2 GO:0005739 ... Q9FGI6 36585502
    773162 8bed:G (2.03) BS05 SF4 7.1.1.2 GO:0005739 ... Q9FGI6 36585502
    773163 8bed:R (2.03) BS01 peptide ? GO:0005739 ... Q9M9M6 36585502
    773164 8bed:R (2.03) BS02 ZN ? GO:0005739 ... Q9M9M6 36585502
    773165 8bee:B (2.04) BS01 SF4 7.1.1.2 GO:0005739 ... Q42577 36585502
    773166 8bee:D (2.04) BS01 peptide 7.1.1.2 GO:0005739 ... P93306 36585502
    773167 8bee:D (2.04) BS02 SF4 7.1.1.2 GO:0005739 ... P93306 36585502
    773168 8bee:I (2.04) BS01 SF4 7.1.1.2 GO:0005739 ... Q42599 36585502
    773169 8bee:I (2.04) BS02 SF4 7.1.1.2 GO:0005739 ... Q42599 36585502
    773170 8bee:P (2.04) BS01 NDP ? GO:0005739 ... Q9SK66 36585502
    773171 8bee:U (2.04) BS01 8Q1 ? GO:0000036 ... O80800 36585502
    773172 8bee:W (2.04) BS01 8Q1 ? GO:0005739 ... Q9LHI0 36585502
    773173 8bef:A (2.13) BS01 Q7G 7.1.1.2 GO:0005739 ... P92533 36585502
    773174 8bef:H (2.13) BS01 UQ9 7.1.1.2 GO:0003954 ... P92558 36585502
    773175 8bef:H (2.13) BS02 Q7G 7.1.1.2 GO:0003954 ... P92558 36585502
    773176 8bef:H (2.13) BS03 Q7G 7.1.1.2 GO:0003954 ... P92558 36585502
    773177 8bef:J (2.13) BS01 Q7G 7.1.1.2 GO:0005739 ... P60497 36585502
    773178 8bef:L (2.13) BS01 UQ5 7.1.1.2 GO:0005739 ... P29388 36585502
    773179 8bef:M (2.13) BS01 Q7G 7.1.1.2 GO:0003954 ... P93313 36585502
    773180 8bef:N (2.13) BS01 Q7G 7.1.1.2 GO:0005739 ... O05000 36585502
    773181 8bef:N (2.13) BS02 UQ5 7.1.1.2 GO:0005739 ... O05000 36585502
    773182 8bef:O (2.13) BS01 FE ? GO:0005515 ... Q9SRR8 36585502
    773183 8bef:X (2.13) BS01 Q7G ? GO:0005739 ... Q8LGE7 36585502
    773184 8bef:Z (2.13) BS01 Q7G ? GO:0005576 ... Q8RWA7 36585502
    773185 8bef:f (2.13) BS01 peptide ? GO:0005739 ... Q84W12 36585502
    773186 8bef:x (2.13) BS01 BCO ? GO:0000325 ... Q9SMN1 36585502
    773187 8bef:y (2.13) BS01 peptide 4.2.1.- GO:0004089 ... Q9C6B3 36585502
    773188 8bef:y (2.13) BS02 ZN 4.2.1.- GO:0004089 ... Q9C6B3 36585502
    773189 8bef:y (2.13) BS03 BCO 4.2.1.- GO:0004089 ... Q9C6B3 36585502
    773190 8bef:z (2.13) BS01 peptide 4.2.1.- GO:0004089 ... Q9FWR5 36585502
    773191 8beg:A (1.84) BS01 MG ? N/A Q04112 37860966
    773192 8beg:B (1.84) BS01 MG ? N/A Q04112 37860966
    773193 8beh:g (2.29) BS01 peptide ? GO:0005739 ... Q9SLC8 36585502
    773194 8beh:n (2.29) BS01 8Q1 ? GO:0000325 ... Q945M1 36585502
    773195 8beh:p (2.29) BS01 peptide ? GO:0005739 ... Q94C12 36585502
    773196 8bek:A (2.86) BS01 rna 3.1.-.- GO:0003723 ... M9TI86 36596301
    773197 8bek:A (2.86) BS02 rna 3.1.-.- GO:0003723 ... M9TI86 36596301
    773198 8bek:B (2.86) BS01 rna 2.7.7.48 GO:0000166 ... M9TLW3 36596301
    773199 8bek:B (2.86) BS02 rna 2.7.7.48 GO:0000166 ... M9TLW3 36596301
    773200 8bek:B (2.86) BS03 rna 2.7.7.48 GO:0000166 ... M9TLW3 36596301

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).