SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    773401 8bf7:c (2.33) BS01 rna ? GO:0002181 ... P0A7P5 37553384
    773402 8bf7:d (2.33) BS01 rna ? GO:0002181 ... P0A7Q1 37553384
    773403 8bf7:e (2.33) BS01 rna ? GO:0002181 ... P0A7Q6 37553384
    773404 8bf7:f (2.33) BS01 rna ? GO:0000028 ... P0A7V0 37553384
    773405 8bf7:g (2.33) BS01 rna ? GO:0000028 ... P0A7V3 37553384
    773406 8bf7:h (2.33) BS01 rna ? GO:0000028 ... P0A7V8 37553384
    773407 8bf7:i (2.33) BS01 rna ? GO:0000028 ... P0A7W1 37553384
    773408 8bf7:j (2.33) BS01 rna ? GO:0002181 ... P02358 37553384
    773409 8bf7:k (2.33) BS01 rna ? GO:0000028 ... P02359 37553384
    773410 8bf7:k (2.33) BS02 rna ? GO:0000028 ... P02359 37553384
    773411 8bf7:l (2.33) BS01 rna ? GO:0000028 ... P0A7W7 37553384
    773412 8bf7:m (2.33) BS01 rna ? GO:0000049 ... P0A7X3 37553384
    773413 8bf7:m (2.33) BS02 rna ? GO:0000049 ... P0A7X3 37553384
    773414 8bf7:n (2.33) BS01 rna ? GO:0000049 ... P0A7R5 37553384
    773415 8bf7:o (2.33) BS01 rna ? GO:0002181 ... P0A7R9 37553384
    773416 8bf7:p (2.33) BS01 rna ? GO:0000049 ... P0A7S3 37553384
    773417 8bf7:q (2.33) BS01 rna ? GO:0000049 ... P0A7S9 37553384
    773418 8bf7:r (2.33) BS01 rna ? GO:0000028 ... P0AG59 37553384
    773419 8bf7:s (2.33) BS01 rna ? GO:0000028 ... P0ADZ4 37553384
    773420 8bf7:s (2.33) BS02 rna ? GO:0000028 ... P0ADZ4 37553384
    773421 8bf7:t (2.33) BS01 rna ? GO:0000028 ... P0A7T3 37553384
    773422 8bf7:u (2.33) BS01 rna ? GO:0000028 ... P0AG63 37553384
    773423 8bf7:v (2.33) BS01 rna ? GO:0002181 ... P0A7T7 37553384
    773424 8bf7:w (2.33) BS01 rna ? GO:0000028 ... P0A7U3 37553384
    773425 8bf7:x (2.33) BS01 rna ? GO:0000028 ... P0A7U7 37553384
    773426 8bf7:y (2.33) BS01 rna ? GO:0000028 ... P68679 37553384
    773427 8bf8:A (2.8) BS01 rna 3.1.21.- GO:0003677 ... Q7DF80 37020015
    773428 8bf9:C (2.69) BS01 rna ? GO:0005789 ... A0A6P3YN15 37983950
    773429 8bf9:C (2.69) BS02 peptide ? GO:0005789 ... A0A6P3YN15 37983950
    773430 8bf9:G (2.69) BS01 rna ? GO:0005783 ... W5NYA9 37983950
    773431 8bf9:P (2.69) BS01 rna ? GO:0002181 ... K4P217 37983950
    773432 8bf9:R (2.69) BS01 rna ? GO:0003723 ... W5PLN0 37983950
    773433 8bf9:U (2.69) BS01 rna ? GO:0002181 ... A0A6P7EJM7 37983950
    773434 8bf9:X (2.69) BS01 rna ? GO:0003735 ... D4P8H6 37983950
    773435 8bf9:X (2.69) BS02 rna ? GO:0003735 ... D4P8H6 37983950
    773436 8bf9:Y (2.69) BS01 rna ? GO:0003723 ... A0A6P3ED73 37983950
    773437 8bf9:Y (2.69) BS02 rna ? GO:0003723 ... A0A6P3ED73 37983950
    773438 8bf9:d (2.69) BS01 rna ? GO:0002181 ... W5PUU0 37983950
    773439 8bf9:h (2.69) BS01 rna ? GO:0000463 ... A0A6P3TAC5 37983950
    773440 8bf9:h (2.69) BS02 rna ? GO:0000463 ... A0A6P3TAC5 37983950
    773441 8bf9:j (2.69) BS01 rna ? GO:0003723 ... W5P472 37983950
    773442 8bf9:j (2.69) BS02 rna ? GO:0003723 ... W5P472 37983950
    773443 8bf9:k (2.69) BS01 rna ? GO:0003735 ... A0A836CRM6 37983950
    773444 8bf9:l (2.69) BS01 rna ? GO:0003735 ... A0A6P3TG10 37983950
    773445 8bf9:l (2.69) BS02 rna ? GO:0003735 ... A0A6P3TG10 37983950
    773446 8bfc:A (1.4) BS01 peptide ? GO:0000122 ... P31947 36926879
    773447 8bfc:A (1.4) BS02 MG ? GO:0000122 ... P31947 36926879
    773448 8bfc:A (1.4) BS03 MG ? GO:0000122 ... P31947 36926879
    773449 8bfe:B (2.1) BS01 peptide N/A N/A N/A 35732733
    773450 8bfe:N (2.1) BS01 peptide N/A N/A N/A 35732733
    773451 8bff:A (2.6) BS01 QG6 ? GO:0003677 ... P37231 36841188
    773452 8bfm:A (1.7) BS01 QI6 2.7.11.17 GO:0004672 ... Q8IU85 N/A
    773453 8bfm:A (1.7) BS02 QI6 2.7.11.17 GO:0004672 ... Q8IU85 N/A
    773454 8bfn:A (3.52) BS01 ADP ? N/A A0A6D0I2P0 36525956
    773455 8bfn:A (3.52) BS02 ADP ? N/A A0A6D0I2P0 36525956
    773456 8bfn:B (3.52) BS01 ADP ? N/A A0A6D0I2P0 36525956
    773457 8bfn:F (3.52) BS01 ADP ? N/A A0A6D0I2P0 36525956
    773458 8bfn:F (3.52) BS02 ADP ? N/A A0A6D0I2P0 36525956
    773459 8bfn:G (3.52) BS01 ADP ? N/A A0A6D0I2P0 36525956
    773460 8bfs:A (1.95) BS01 QNR 2.7.11.17 GO:0004672 ... Q8IU85 N/A
    773461 8bft:A (1.19) BS01 peptide ? GO:0000162 ... P30177 36864742
    773462 8bfw:A (2.33) BS01 peptide 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 37433017
    773463 8bfw:C (2.33) BS01 peptide 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 37433017
    773464 8bfy:A (1.55) BS01 BGC ? N/A C9Z451 37791952
    773465 8bfy:A (1.55) BS02 BGC ? N/A C9Z451 37791952
    773466 8bfy:A (1.55) BS03 BGC ? N/A C9Z451 37791952
    773467 8bga:A (1.982) BS01 QQL 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38238420
    773468 8bga:B (1.982) BS01 QQL 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38238420
    773469 8bgc:A (2.8) BS01 QIA 2.7.11.1 GO:0004672 ... P68400 37077385
    773470 8bgc:B (2.8) BS01 QIA 2.7.11.1 GO:0004672 ... P68400 37077385
    773471 8bgd:A (1.621) BS01 QH0 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38238420
    773472 8bge:A (2.11) BS01 rna ? GO:0000027 ... P60422 37553384
    773473 8bge:B (2.11) BS01 rna ? GO:0000027 ... P60438 37553384
    773474 8bge:C (2.11) BS01 rna ? GO:0001070 ... P60723 37553384
    773475 8bge:D (2.11) BS01 rna ? GO:0000027 ... P62399 37553384
    773476 8bge:D (2.11) BS02 rna ? GO:0000027 ... P62399 37553384
    773477 8bge:D (2.11) BS03 rna ? GO:0000027 ... P62399 37553384
    773478 8bge:E (2.11) BS01 rna ? GO:0000027 ... P0AG55 37553384
    773479 8bge:F (2.11) BS01 rna ? GO:0002181 ... P0A7R1 37553384
    773480 8bge:G (2.11) BS01 rna ? GO:0002181 ... P0AA10 37553384
    773481 8bge:H (2.11) BS01 rna ? GO:0002181 ... P0ADY3 37553384
    773482 8bge:I (2.11) BS01 rna ? GO:0002181 ... P02413 37553384
    773483 8bge:J (2.11) BS01 rna ? GO:0000027 ... P0ADY7 37553384
    773484 8bge:J (2.11) BS02 rna ? GO:0000027 ... P0ADY7 37553384
    773485 8bge:K (2.11) BS01 rna ? GO:0000027 ... P0AG44 37553384
    773486 8bge:L (2.11) BS01 rna ? GO:0002181 ... P0C018 37553384
    773487 8bge:L (2.11) BS02 rna ? GO:0002181 ... P0C018 37553384
    773488 8bge:M (2.11) BS01 rna ? GO:0000027 ... P0A7K6 37553384
    773489 8bge:M (2.11) BS02 rna ? GO:0000027 ... P0A7K6 37553384
    773490 8bge:N (2.11) BS01 rna ? GO:0000027 ... P0A7L3 37553384
    773491 8bge:O (2.11) BS01 rna ? GO:0002181 ... P0AG48 37553384
    773492 8bge:P (2.11) BS01 rna ? GO:0002181 ... P61175 37553384
    773493 8bge:Q (2.11) BS01 rna ? GO:0000027 ... P0ADZ0 37553384
    773494 8bge:R (2.11) BS01 rna ? GO:0000027 ... P60624 37553384
    773495 8bge:S (2.11) BS01 rna ? GO:0000027 ... P68919 37553384
    773496 8bge:T (2.11) BS01 rna ? GO:0000027 ... P0A7L8 37553384
    773497 8bge:U (2.11) BS01 rna ? GO:0000027 ... P0A7M2 37553384
    773498 8bge:V (2.11) BS01 rna ? GO:0000027 ... P0A7M6 37553384
    773499 8bge:W (2.11) BS01 rna ? GO:0000027 ... P0AG51 37553384
    773500 8bge:a (2.11) BS01 rna ? GO:0000027 ... P0A7N4 37553384
    773501 8bge:b (2.11) BS01 rna ? GO:0000027 ... P0A7N9 37553384
    773502 8bge:c (2.11) BS01 rna ? GO:0002181 ... P0A7P5 37553384
    773503 8bge:d (2.11) BS01 rna ? GO:0002181 ... P0A7Q1 37553384
    773504 8bge:e (2.11) BS01 rna ? GO:0002181 ... P0A7Q6 37553384
    773505 8bge:f (2.11) BS01 rna ? GO:0000028 ... P0A7V0 37553384
    773506 8bge:g (2.11) BS01 rna ? GO:0000028 ... P0A7V3 37553384
    773507 8bge:h (2.11) BS01 rna ? GO:0000028 ... P0A7V8 37553384
    773508 8bge:i (2.11) BS01 rna ? GO:0000028 ... P0A7W1 37553384
    773509 8bge:j (2.11) BS01 rna ? GO:0002181 ... P02358 37553384
    773510 8bge:k (2.11) BS01 rna ? GO:0000028 ... P02359 37553384
    773511 8bge:l (2.11) BS01 rna ? GO:0000028 ... P0A7W7 37553384
    773512 8bge:m (2.11) BS01 rna ? GO:0000049 ... P0A7X3 37553384
    773513 8bge:m (2.11) BS02 rna ? GO:0000049 ... P0A7X3 37553384
    773514 8bge:n (2.11) BS01 rna ? GO:0000049 ... P0A7R5 37553384
    773515 8bge:o (2.11) BS01 rna ? GO:0002181 ... P0A7R9 37553384
    773516 8bge:p (2.11) BS01 rna ? GO:0000049 ... P0A7S3 37553384
    773517 8bge:q (2.11) BS01 rna ? GO:0000049 ... P0A7S9 37553384
    773518 8bge:r (2.11) BS01 rna ? GO:0000028 ... P0AG59 37553384
    773519 8bge:s (2.11) BS01 rna ? GO:0000028 ... P0ADZ4 37553384
    773520 8bge:s (2.11) BS02 rna ? GO:0000028 ... P0ADZ4 37553384
    773521 8bge:t (2.11) BS01 rna ? GO:0000028 ... P0A7T3 37553384
    773522 8bge:u (2.11) BS01 rna ? GO:0000028 ... P0AG63 37553384
    773523 8bge:v (2.11) BS01 rna ? GO:0002181 ... P0A7T7 37553384
    773524 8bge:w (2.11) BS01 rna ? GO:0000028 ... P0A7U3 37553384
    773525 8bge:x (2.11) BS01 rna ? GO:0000028 ... P0A7U7 37553384
    773526 8bge:y (2.11) BS01 rna ? GO:0000028 ... P68679 37553384
    773527 8bgh:A (2.88) BS01 rna ? GO:0000027 ... P60422 37553384
    773528 8bgh:B (2.88) BS01 rna ? GO:0000027 ... P60438 37553384
    773529 8bgh:C (2.88) BS01 rna ? GO:0001070 ... P60723 37553384
    773530 8bgh:D (2.88) BS01 rna ? GO:0000027 ... P62399 37553384
    773531 8bgh:D (2.88) BS02 rna ? GO:0000027 ... P62399 37553384
    773532 8bgh:D (2.88) BS03 rna ? GO:0000027 ... P62399 37553384
    773533 8bgh:E (2.88) BS01 rna ? GO:0000027 ... P0AG55 37553384
    773534 8bgh:F (2.88) BS01 rna ? GO:0002181 ... P0A7R1 37553384
    773535 8bgh:G (2.88) BS01 rna ? GO:0002181 ... P0AA10 37553384
    773536 8bgh:H (2.88) BS01 rna ? GO:0002181 ... P0ADY3 37553384
    773537 8bgh:H (2.88) BS02 rna ? GO:0002181 ... P0ADY3 37553384
    773538 8bgh:I (2.88) BS01 rna ? GO:0002181 ... P02413 37553384
    773539 8bgh:J (2.88) BS01 rna ? GO:0000027 ... P0ADY7 37553384
    773540 8bgh:K (2.88) BS01 rna ? GO:0000027 ... P0AG44 37553384
    773541 8bgh:L (2.88) BS01 rna ? GO:0002181 ... P0C018 37553384
    773542 8bgh:L (2.88) BS02 rna ? GO:0002181 ... P0C018 37553384
    773543 8bgh:M (2.88) BS01 rna ? GO:0000027 ... P0A7K6 37553384
    773544 8bgh:M (2.88) BS02 rna ? GO:0000027 ... P0A7K6 37553384
    773545 8bgh:N (2.88) BS01 rna ? GO:0000027 ... P0A7L3 37553384
    773546 8bgh:O (2.88) BS01 rna ? GO:0002181 ... P0AG48 37553384
    773547 8bgh:P (2.88) BS01 rna ? GO:0002181 ... P61175 37553384
    773548 8bgh:Q (2.88) BS01 rna ? GO:0000027 ... P0ADZ0 37553384
    773549 8bgh:R (2.88) BS01 rna ? GO:0000027 ... P60624 37553384
    773550 8bgh:S (2.88) BS01 rna ? GO:0000027 ... P68919 37553384
    773551 8bgh:T (2.88) BS01 rna ? GO:0000027 ... P0A7L8 37553384
    773552 8bgh:U (2.88) BS01 rna ? GO:0000027 ... P0A7M2 37553384
    773553 8bgh:V (2.88) BS01 rna ? GO:0000027 ... P0A7M6 37553384
    773554 8bgh:W (2.88) BS01 rna ? GO:0000027 ... P0AG51 37553384
    773555 8bgh:X (2.88) BS01 rna ? GO:0002181 ... P0A7M9 37553384
    773556 8bgh:a (2.88) BS01 rna ? GO:0000027 ... P0A7N4 37553384
    773557 8bgh:b (2.88) BS01 rna ? GO:0000027 ... P0A7N9 37553384
    773558 8bgh:c (2.88) BS01 rna ? GO:0002181 ... P0A7P5 37553384
    773559 8bgh:d (2.88) BS01 rna ? GO:0002181 ... P0A7Q1 37553384
    773560 8bgh:e (2.88) BS01 rna ? GO:0002181 ... P0A7Q6 37553384
    773561 8bgh:f (2.88) BS01 rna ? GO:0000028 ... P0A7V0 37553384
    773562 8bgh:g (2.88) BS01 rna ? GO:0000028 ... P0A7V3 37553384
    773563 8bgh:h (2.88) BS01 rna ? GO:0000028 ... P0A7V8 37553384
    773564 8bgh:i (2.88) BS01 rna ? GO:0000028 ... P0A7W1 37553384
    773565 8bgh:j (2.88) BS01 rna ? GO:0002181 ... P02358 37553384
    773566 8bgh:k (2.88) BS01 rna ? GO:0000028 ... P02359 37553384
    773567 8bgh:l (2.88) BS01 rna ? GO:0000028 ... P0A7W7 37553384
    773568 8bgh:m (2.88) BS01 rna ? GO:0000049 ... P0A7X3 37553384
    773569 8bgh:n (2.88) BS01 rna ? GO:0000049 ... P0A7R5 37553384
    773570 8bgh:o (2.88) BS01 rna ? GO:0002181 ... P0A7R9 37553384
    773571 8bgh:p (2.88) BS01 rna ? GO:0000049 ... P0A7S3 37553384
    773572 8bgh:q (2.88) BS01 rna ? GO:0000049 ... P0A7S9 37553384
    773573 8bgh:r (2.88) BS01 rna ? GO:0000028 ... P0AG59 37553384
    773574 8bgh:s (2.88) BS01 rna ? GO:0000028 ... P0ADZ4 37553384
    773575 8bgh:s (2.88) BS02 rna ? GO:0000028 ... P0ADZ4 37553384
    773576 8bgh:t (2.88) BS01 rna ? GO:0000028 ... P0A7T3 37553384
    773577 8bgh:u (2.88) BS01 rna ? GO:0000028 ... P0AG63 37553384
    773578 8bgh:v (2.88) BS01 rna ? GO:0002181 ... P0A7T7 37553384
    773579 8bgh:w (2.88) BS01 rna ? GO:0000028 ... P0A7U3 37553384
    773580 8bgh:x (2.88) BS01 rna ? GO:0000028 ... P0A7U7 37553384
    773581 8bgh:y (2.88) BS01 rna ? GO:0000028 ... P68679 37553384
    773582 8bgi:A (2.56) BS01 FYP ? GO:0004888 ... P31644 37903907
    773583 8bgi:A (2.56) BS02 P9N ? GO:0004888 ... P31644 37903907
    773584 8bgi:A (2.56) BS03 FYP ? GO:0004888 ... P31644 37903907
    773585 8bgi:A (2.56) BS04 P9N ? GO:0004888 ... P31644 37903907
    773586 8bgi:B (2.56) BS01 FYP ? GO:0004888 ... P31644 37903907
    773587 8bgi:B (2.56) BS02 P9N ? GO:0004888 ... P31644 37903907
    773588 8bgi:B (2.56) BS03 FYP ? GO:0004888 ... P31644 37903907
    773589 8bgi:B (2.56) BS04 P9N ? GO:0004888 ... P31644 37903907
    773590 8bgi:C (2.56) BS01 FYP ? GO:0004888 ... P31644 37903907
    773591 8bgi:C (2.56) BS02 P9N ? GO:0004888 ... P31644 37903907
    773592 8bgi:C (2.56) BS03 FYP ? GO:0004888 ... P31644 37903907
    773593 8bgi:C (2.56) BS04 P9N ? GO:0004888 ... P31644 37903907
    773594 8bgi:D (2.56) BS01 FYP ? GO:0004888 ... P31644 37903907
    773595 8bgi:D (2.56) BS02 P9N ? GO:0004888 ... P31644 37903907
    773596 8bgi:D (2.56) BS03 FYP ? GO:0004888 ... P31644 37903907
    773597 8bgi:D (2.56) BS04 P9N ? GO:0004888 ... P31644 37903907
    773598 8bgi:E (2.56) BS01 FYP ? GO:0004888 ... P31644 37903907
    773599 8bgi:E (2.56) BS02 P9N ? GO:0004888 ... P31644 37903907
    773600 8bgi:E (2.56) BS03 FYP ? GO:0004888 ... P31644 37903907

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).