SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    773601 8bgi:E (2.56) BS04 P9N ? GO:0004888 ... P31644 37903907
    773602 8bgj:A (1.63) BS01 MG 2.7.7.49 GO:0003723 ... I7LG99 37279911
    773603 8bgj:B (1.63) BS01 MG 2.7.7.49 GO:0003723 ... I7LG99 37279911
    773604 8bgj:C (1.63) BS01 MG 2.7.7.49 GO:0003723 ... I7LG99 37279911
    773605 8bgl:A (2.0) BS01 ABA ? GO:0006091 ... D1MPT3 36748340
    773606 8bgl:B (2.0) BS01 ABA ? GO:0006091 ... D1MPT3 36748340
    773607 8bgn:A (2.76) BS01 ZN ? GO:0016811 ... A0A160VQZ8 36555375
    773608 8bgn:B (2.76) BS01 ZN ? GO:0016811 ... A0A160VQZ8 36555375
    773609 8bgn:C (2.76) BS01 ZN ? GO:0016811 ... A0A160VQZ8 36555375
    773610 8bgo:A (3.08) BS01 ZN 3.5.1.136 GO:0016811 ... A0A160VQZ8 36555375
    773611 8bgo:B (3.08) BS01 ZN 3.5.1.136 GO:0016811 ... A0A160VQZ8 36555375
    773612 8bgo:C (3.08) BS01 ZN 3.5.1.136 GO:0016811 ... A0A160VQZ8 36555375
    773613 8bgo:D (3.08) BS01 ZN 3.5.1.136 GO:0016811 ... A0A160VQZ8 36555375
    773614 8bgo:E (3.08) BS01 ZN 3.5.1.136 GO:0016811 ... A0A160VQZ8 36555375
    773615 8bgo:F (3.08) BS01 ZN 3.5.1.136 GO:0016811 ... A0A160VQZ8 36555375
    773616 8bgo:G (3.08) BS01 ZN 3.5.1.136 GO:0016811 ... A0A160VQZ8 36555375
    773617 8bgo:H (3.08) BS01 ZN 3.5.1.136 GO:0016811 ... A0A160VQZ8 36555375
    773618 8bgo:I (3.08) BS01 ZN 3.5.1.136 GO:0016811 ... A0A160VQZ8 36555375
    773619 8bgo:J (3.08) BS01 ZN 3.5.1.136 GO:0016811 ... A0A160VQZ8 36555375
    773620 8bgo:K (3.08) BS01 ZN 3.5.1.136 GO:0016811 ... A0A160VQZ8 36555375
    773621 8bgo:L (3.08) BS01 ZN 3.5.1.136 GO:0016811 ... A0A160VQZ8 36555375
    773622 8bgp:A (2.51) BS01 ZN ? GO:0016811 ... A0A160VQZ8 36555375
    773623 8bgp:B (2.51) BS01 ZN ? GO:0016811 ... A0A160VQZ8 36555375
    773624 8bgp:C (2.51) BS01 ZN ? GO:0016811 ... A0A160VQZ8 36555375
    773625 8bgp:D (2.51) BS01 ZN ? GO:0016811 ... A0A160VQZ8 36555375
    773626 8bgp:E (2.51) BS01 ZN ? GO:0016811 ... A0A160VQZ8 36555375
    773627 8bgp:F (2.51) BS01 ZN ? GO:0016811 ... A0A160VQZ8 36555375
    773628 8bgt:A (2.15) BS01 SAM ? GO:0008168 ... Q7MY08 36963398
    773629 8bgt:A (2.15) BS02 TRP ? GO:0008168 ... Q7MY08 36963398
    773630 8bgt:B (2.15) BS01 SAM ? GO:0008168 ... Q7MY08 36963398
    773631 8bgu:A (4.1) BS01 rna ? GO:0000027 ... P46777 37291423
    773632 8bgu:B (4.1) BS01 rna ? GO:0000027 ... P62913 37291423
    773633 8bgw:A (2.2) BS01 HEM N/A GO:0004129 ... N/A 37296134
    773634 8bgw:A (2.2) BS02 HEM N/A GO:0004129 ... N/A 37296134
    773635 8bgw:A (2.2) BS03 FE N/A GO:0004129 ... N/A 37296134
    773636 8bgw:A (2.2) BS04 CA N/A GO:0004129 ... N/A 37296134
    773637 8bgw:A (2.2) BS05 10M N/A GO:0004129 ... N/A 37296134
    773638 8bgw:A (2.2) BS06 UQ1 N/A GO:0004129 ... N/A 37296134
    773639 8bgw:A (2.2) BS07 LOP N/A GO:0004129 ... N/A 37296134
    773640 8bgw:A (2.2) BS08 LOP N/A GO:0004129 ... N/A 37296134
    773641 8bgw:A (2.2) BS09 LOP N/A GO:0004129 ... N/A 37296134
    773642 8bgw:A (2.2) BS10 LOP N/A GO:0004129 ... N/A 37296134
    773643 8bgw:A (2.2) BS11 LOP N/A GO:0004129 ... N/A 37296134
    773644 8bgw:A (2.2) BS12 LOP N/A GO:0004129 ... N/A 37296134
    773645 8bgw:A (2.2) BS13 10M N/A GO:0004129 ... N/A 37296134
    773646 8bgw:A (2.2) BS14 LOP N/A GO:0004129 ... N/A 37296134
    773647 8bgw:A (2.2) BS15 LOP N/A GO:0004129 ... N/A 37296134
    773648 8bgw:B (2.2) BS01 10M N/A GO:0004129 ... N/A 37296134
    773649 8bgw:B (2.2) BS02 LOP N/A GO:0004129 ... N/A 37296134
    773650 8bgw:B (2.2) BS03 LOP N/A GO:0004129 ... N/A 37296134
    773651 8bgw:B (2.2) BS04 LOP N/A GO:0004129 ... N/A 37296134
    773652 8bgw:B (2.2) BS05 10M N/A GO:0004129 ... N/A 37296134
    773653 8bgw:B (2.2) BS06 HEM N/A GO:0004129 ... N/A 37296134
    773654 8bgw:B (2.2) BS07 HEM N/A GO:0004129 ... N/A 37296134
    773655 8bgw:B (2.2) BS08 FE N/A GO:0004129 ... N/A 37296134
    773656 8bgw:B (2.2) BS09 CA N/A GO:0004129 ... N/A 37296134
    773657 8bgw:B (2.2) BS10 UQ1 N/A GO:0004129 ... N/A 37296134
    773658 8bgw:B (2.2) BS11 LOP N/A GO:0004129 ... N/A 37296134
    773659 8bgw:B (2.2) BS12 LOP N/A GO:0004129 ... N/A 37296134
    773660 8bgw:B (2.2) BS13 LOP N/A GO:0004129 ... N/A 37296134
    773661 8bgw:B (2.2) BS14 LOP N/A GO:0004129 ... N/A 37296134
    773662 8bgw:B (2.2) BS15 LOP N/A GO:0004129 ... N/A 37296134
    773663 8bgw:B (2.2) BS16 LOP N/A GO:0004129 ... N/A 37296134
    773664 8bgx:A (1.9) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    773665 8bgx:A (1.9) BS02 QPF ? GO:0008168 ... Q7MY08 36963398
    773666 8bgx:B (1.9) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    773667 8bgx:B (1.9) BS02 QPF ? GO:0008168 ... Q7MY08 36963398
    773668 8bgx:C (1.9) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    773669 8bgx:C (1.9) BS02 QPF ? GO:0008168 ... Q7MY08 36963398
    773670 8bgx:D (1.9) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    773671 8bgx:D (1.9) BS02 QPF ? GO:0008168 ... Q7MY08 36963398
    773672 8bgy:A (1.95) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    773673 8bgy:A (1.95) BS02 QP3 ? GO:0008168 ... Q7MY08 36963398
    773674 8bgy:B (1.95) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    773675 8bgy:B (1.95) BS02 QP3 ? GO:0008168 ... Q7MY08 36963398
    773676 8bgy:C (1.95) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    773677 8bgy:C (1.95) BS02 QP3 ? GO:0008168 ... Q7MY08 36963398
    773678 8bgy:D (1.95) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    773679 8bgy:D (1.95) BS02 QP3 ? GO:0008168 ... Q7MY08 36963398
    773680 8bgz:A (2.0) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    773681 8bgz:A (2.0) BS02 QOI ? GO:0008168 ... Q7MY08 36963398
    773682 8bgz:B (2.0) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    773683 8bgz:B (2.0) BS02 QOI ? GO:0008168 ... Q7MY08 36963398
    773684 8bgz:C (2.0) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    773685 8bgz:C (2.0) BS02 QOI ? GO:0008168 ... Q7MY08 36963398
    773686 8bgz:D (2.0) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    773687 8bgz:D (2.0) BS02 QOI ? GO:0008168 ... Q7MY08 36963398
    773688 8bh0:A (1.7) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    773689 8bh0:A (1.7) BS02 QPO ? GO:0008168 ... Q7MY08 36963398
    773690 8bh0:B (1.7) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    773691 8bh0:B (1.7) BS02 QPO ? GO:0008168 ... Q7MY08 36963398
    773692 8bh0:C (1.7) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    773693 8bh0:C (1.7) BS02 QPO ? GO:0008168 ... Q7MY08 36963398
    773694 8bh0:D (1.7) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    773695 8bh0:D (1.7) BS02 QPO ? GO:0008168 ... Q7MY08 36963398
    773696 8bh0:E (1.7) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    773697 8bh0:E (1.7) BS02 QPO ? GO:0008168 ... Q7MY08 36963398
    773698 8bh0:F (1.7) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    773699 8bh0:F (1.7) BS02 QPO ? GO:0008168 ... Q7MY08 36963398
    773700 8bh0:G (1.7) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    773701 8bh0:G (1.7) BS02 QPO ? GO:0008168 ... Q7MY08 36963398
    773702 8bh0:H (1.7) BS01 SAH ? GO:0008168 ... Q7MY08 36963398
    773703 8bh0:H (1.7) BS02 QPO ? GO:0008168 ... Q7MY08 36963398
    773704 8bh3:A (4.55) BS01 dna 2.7.11.1 GO:0000460 ... P78527 37256950
    773705 8bh3:A (4.55) BS02 dna 2.7.11.1 GO:0000460 ... P78527 37256950
    773706 8bh3:B (4.55) BS01 dna 3.6.4.-
    4.2.99.-
    GO:0000723 ... P12956 37256950
    773707 8bh3:B (4.55) BS02 dna 3.6.4.-
    4.2.99.-
    GO:0000723 ... P12956 37256950
    773708 8bh3:C (4.55) BS01 dna 3.6.4.- GO:0000723 ... P13010 37256950
    773709 8bh3:C (4.55) BS02 dna 3.6.4.- GO:0000723 ... P13010 37256950
    773710 8bh3:L (4.55) BS01 dna 3.6.4.- GO:0000723 ... P13010 37256950
    773711 8bh3:L (4.55) BS02 dna 3.6.4.- GO:0000723 ... P13010 37256950
    773712 8bh3:S (4.55) BS01 dna 2.7.11.1 GO:0000460 ... P78527 37256950
    773713 8bh3:S (4.55) BS02 dna 2.7.11.1 GO:0000460 ... P78527 37256950
    773714 8bh3:T (4.55) BS01 dna 3.6.4.-
    4.2.99.-
    GO:0000723 ... P12956 37256950
    773715 8bh4:A (2.62) BS01 rna ? GO:0000027 ... P60422 37553384
    773716 8bh4:B (2.62) BS01 rna ? GO:0000027 ... P60438 37553384
    773717 8bh4:C (2.62) BS01 rna ? GO:0001070 ... P60723 37553384
    773718 8bh4:D (2.62) BS01 rna ? GO:0000027 ... P62399 37553384
    773719 8bh4:D (2.62) BS02 rna ? GO:0000027 ... P62399 37553384
    773720 8bh4:E (2.62) BS01 rna ? GO:0000027 ... P0AG55 37553384
    773721 8bh4:F (2.62) BS01 rna ? GO:0002181 ... P0A7R1 37553384
    773722 8bh4:G (2.62) BS01 rna ? GO:0002181 ... P0AA10 37553384
    773723 8bh4:H (2.62) BS01 rna ? GO:0002181 ... P0ADY3 37553384
    773724 8bh4:H (2.62) BS02 rna ? GO:0002181 ... P0ADY3 37553384
    773725 8bh4:I (2.62) BS01 rna ? GO:0002181 ... P02413 37553384
    773726 8bh4:J (2.62) BS01 rna ? GO:0000027 ... P0ADY7 37553384
    773727 8bh4:J (2.62) BS02 rna ? GO:0000027 ... P0ADY7 37553384
    773728 8bh4:K (2.62) BS01 rna ? GO:0000027 ... P0AG44 37553384
    773729 8bh4:L (2.62) BS01 rna ? GO:0002181 ... P0C018 37553384
    773730 8bh4:L (2.62) BS02 rna ? GO:0002181 ... P0C018 37553384
    773731 8bh4:M (2.62) BS01 rna ? GO:0000027 ... P0A7K6 37553384
    773732 8bh4:M (2.62) BS02 rna ? GO:0000027 ... P0A7K6 37553384
    773733 8bh4:N (2.62) BS01 rna ? GO:0000027 ... P0A7L3 37553384
    773734 8bh4:O (2.62) BS01 rna ? GO:0002181 ... P0AG48 37553384
    773735 8bh4:P (2.62) BS01 rna ? GO:0002181 ... P61175 37553384
    773736 8bh4:Q (2.62) BS01 rna ? GO:0000027 ... P0ADZ0 37553384
    773737 8bh4:R (2.62) BS01 rna ? GO:0000027 ... P60624 37553384
    773738 8bh4:S (2.62) BS01 rna ? GO:0000027 ... P68919 37553384
    773739 8bh4:T (2.62) BS01 rna ? GO:0000027 ... P0A7L8 37553384
    773740 8bh4:U (2.62) BS01 rna ? GO:0000027 ... P0A7M2 37553384
    773741 8bh4:V (2.62) BS01 rna ? GO:0000027 ... P0A7M6 37553384
    773742 8bh4:W (2.62) BS01 rna ? GO:0000027 ... P0AG51 37553384
    773743 8bh4:a (2.62) BS01 rna ? GO:0000027 ... P0A7N4 37553384
    773744 8bh4:b (2.62) BS01 rna ? GO:0000027 ... P0A7N9 37553384
    773745 8bh4:c (2.62) BS01 rna ? GO:0002181 ... P0A7P5 37553384
    773746 8bh4:d (2.62) BS01 rna ? GO:0002181 ... P0A7Q1 37553384
    773747 8bh4:e (2.62) BS01 rna ? GO:0002181 ... P0A7Q6 37553384
    773748 8bh4:f (2.62) BS01 rna ? GO:0000028 ... P0A7V0 37553384
    773749 8bh4:g (2.62) BS01 rna ? GO:0000028 ... P0A7V3 37553384
    773750 8bh4:h (2.62) BS01 rna ? GO:0000028 ... P0A7V8 37553384
    773751 8bh4:i (2.62) BS01 rna ? GO:0000028 ... P0A7W1 37553384
    773752 8bh4:j (2.62) BS01 rna ? GO:0002181 ... P02358 37553384
    773753 8bh4:k (2.62) BS01 rna ? GO:0000028 ... P02359 37553384
    773754 8bh4:k (2.62) BS02 rna ? GO:0000028 ... P02359 37553384
    773755 8bh4:l (2.62) BS01 rna ? GO:0000028 ... P0A7W7 37553384
    773756 8bh4:m (2.62) BS01 rna ? GO:0000049 ... P0A7X3 37553384
    773757 8bh4:n (2.62) BS01 rna ? GO:0000049 ... P0A7R5 37553384
    773758 8bh4:o (2.62) BS01 rna ? GO:0002181 ... P0A7R9 37553384
    773759 8bh4:p (2.62) BS01 rna ? GO:0000049 ... P0A7S3 37553384
    773760 8bh4:q (2.62) BS01 rna ? GO:0000049 ... P0A7S9 37553384
    773761 8bh4:r (2.62) BS01 rna ? GO:0000028 ... P0AG59 37553384
    773762 8bh4:s (2.62) BS01 rna ? GO:0000028 ... P0ADZ4 37553384
    773763 8bh4:s (2.62) BS02 rna ? GO:0000028 ... P0ADZ4 37553384
    773764 8bh4:t (2.62) BS01 rna ? GO:0000028 ... P0A7T3 37553384
    773765 8bh4:u (2.62) BS01 rna ? GO:0000028 ... P0AG63 37553384
    773766 8bh4:v (2.62) BS01 rna ? GO:0002181 ... P0A7T7 37553384
    773767 8bh4:w (2.62) BS01 rna ? GO:0000028 ... P0A7U3 37553384
    773768 8bh4:x (2.62) BS01 rna ? GO:0000028 ... P0A7U7 37553384
    773769 8bh4:y (2.62) BS01 rna ? GO:0000028 ... P68679 37553384
    773770 8bh6:b (3.7) BS01 rna ? GO:0003735 ... Q2FZ25 N/A
    773771 8bh6:c (3.7) BS01 rna ? GO:0003676 ... Q2FW12 N/A
    773772 8bh6:d (3.7) BS01 rna ? GO:0003723 ... Q2FXK6 N/A
    773773 8bh6:e (3.7) BS01 rna ? GO:0003723 ... Q2FW23 N/A
    773774 8bh6:f (3.7) BS01 rna ? GO:0003735 ... Q2G113 N/A
    773775 8bh6:g (3.7) BS01 rna ? GO:0000028 ... P48940 N/A
    773776 8bh6:h (3.7) BS01 rna ? GO:0003735 ... Q2FW20 N/A
    773777 8bh6:i (3.7) BS01 rna ? GO:0003723 ... Q2FW39 N/A
    773778 8bh6:j (3.7) BS01 rna ? GO:0000049 ... Q931G5 N/A
    773779 8bh6:k (3.7) BS01 rna ? GO:0003735 ... Q2FW31 N/A
    773780 8bh6:l (3.7) BS01 rna ? GO:0000049 ... P0A0H0 N/A
    773781 8bh6:m (3.7) BS01 rna ? GO:0000049 ... Q2FW30 N/A
    773782 8bh6:n (3.7) BS01 rna ? GO:0003735 ... Q2FW19 N/A
    773783 8bh6:o (3.7) BS01 rna ? GO:0003735 ... Q2G2Q1 N/A
    773784 8bh6:p (3.7) BS01 rna ? GO:0003735 ... Q2FZ45 N/A
    773785 8bh6:q (3.7) BS01 rna ? GO:0003735 ... Q2FW15 N/A
    773786 8bh6:r (3.7) BS01 rna ? GO:0003735 ... Q2G111 N/A
    773787 8bh6:s (3.7) BS01 rna ? GO:0000028 ... Q2FW10 N/A
    773788 8bh6:t (3.7) BS01 rna ? GO:0003723 ... Q2FXY6 N/A
    773789 8bh7:A (4.23) BS01 rna ? GO:0000028 ... Q2G2D3 N/A
    773790 8bh7:b (4.23) BS01 rna ? GO:0003735 ... Q2FZ25 N/A
    773791 8bh7:c (4.23) BS01 rna ? GO:0003676 ... Q2FW12 N/A
    773792 8bh7:d (4.23) BS01 rna ? GO:0003723 ... Q2FXK6 N/A
    773793 8bh7:e (4.23) BS01 rna ? GO:0003723 ... Q2FW23 N/A
    773794 8bh7:f (4.23) BS01 rna ? GO:0003735 ... Q2G113 N/A
    773795 8bh7:g (4.23) BS01 rna ? GO:0000028 ... P48940 N/A
    773796 8bh7:h (4.23) BS01 rna ? GO:0003735 ... Q2FW20 N/A
    773797 8bh7:i (4.23) BS01 rna ? GO:0003723 ... Q2FW39 N/A
    773798 8bh7:j (4.23) BS01 rna ? GO:0000049 ... Q931G5 N/A
    773799 8bh7:k (4.23) BS01 rna ? GO:0003735 ... Q2FW31 N/A
    773800 8bh7:l (4.23) BS01 rna ? GO:0000049 ... P0A0H0 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).