SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    773801 8bh7:m (4.23) BS01 rna ? GO:0000049 ... Q2FW30 N/A
    773802 8bh7:n (4.23) BS01 rna ? GO:0003735 ... Q2FW19 N/A
    773803 8bh7:o (4.23) BS01 rna ? GO:0003735 ... Q2G2Q1 N/A
    773804 8bh7:p (4.23) BS01 rna ? GO:0003735 ... Q2FZ45 N/A
    773805 8bh7:q (4.23) BS01 rna ? GO:0003735 ... Q2FW15 N/A
    773806 8bh7:r (4.23) BS01 rna ? GO:0003735 ... Q2G111 N/A
    773807 8bh7:s (4.23) BS01 rna ? GO:0000028 ... Q2FW10 N/A
    773808 8bh7:t (4.23) BS01 rna ? GO:0003723 ... Q2FXY6 N/A
    773809 8bh8:A (2.88) BS01 rna ? GO:0000184 ... C5MJA9 N/A
    773810 8bh9:A (2.09) BS01 rna ? GO:0000184 ... C5MJA9 N/A
    773811 8bha:A (2.67) BS01 QI0 ? GO:0004888 ... P31644 37903907
    773812 8bha:A (2.67) BS02 QI0 ? GO:0004888 ... P31644 37903907
    773813 8bha:B (2.67) BS01 QI0 ? GO:0004888 ... P31644 37903907
    773814 8bha:B (2.67) BS02 QI0 ? GO:0004888 ... P31644 37903907
    773815 8bha:C (2.67) BS01 QI0 ? GO:0004888 ... P31644 37903907
    773816 8bha:C (2.67) BS02 QI0 ? GO:0004888 ... P31644 37903907
    773817 8bha:D (2.67) BS01 QI0 ? GO:0004888 ... P31644 37903907
    773818 8bha:D (2.67) BS02 QI0 ? GO:0004888 ... P31644 37903907
    773819 8bha:E (2.67) BS01 QI0 ? GO:0004888 ... P31644 37903907
    773820 8bha:E (2.67) BS02 QI0 ? GO:0004888 ... P31644 37903907
    773821 8bhb:A (2.54) BS01 EIE ? GO:0004888 ... P31644 37903907
    773822 8bhb:A (2.54) BS02 EIE ? GO:0004888 ... P31644 37903907
    773823 8bhb:B (2.54) BS01 EIE ? GO:0004888 ... P31644 37903907
    773824 8bhb:B (2.54) BS02 EIE ? GO:0004888 ... P31644 37903907
    773825 8bhb:C (2.54) BS01 EIE ? GO:0004888 ... P31644 37903907
    773826 8bhb:C (2.54) BS02 EIE ? GO:0004888 ... P31644 37903907
    773827 8bhb:D (2.54) BS01 EIE ? GO:0004888 ... P31644 37903907
    773828 8bhb:D (2.54) BS02 EIE ? GO:0004888 ... P31644 37903907
    773829 8bhb:E (2.54) BS01 EIE ? GO:0004888 ... P31644 37903907
    773830 8bhb:E (2.54) BS02 EIE ? GO:0004888 ... P31644 37903907
    773831 8bhf:A1 (3.1) BS01 rna ? GO:0002181 ... G1T0C1 37653241
    773832 8bhf:A1 (3.1) BS02 rna ? GO:0002181 ... G1T0C1 37653241
    773833 8bhf:B1 (3.1) BS01 rna N/A GO:0003735 ... N/A 37653241
    773834 8bhf:B3 (3.1) BS01 rna ? GO:0003735 ... G1TJH8 37653241
    773835 8bhf:C1 (3.1) BS01 rna ? GO:0003735 ... G1SCJ6 37653241
    773836 8bhf:C1 (3.1) BS02 rna ? GO:0003735 ... G1SCJ6 37653241
    773837 8bhf:C3 (3.1) BS01 rna ? GO:0003735 ... G1SS70 37653241
    773838 8bhf:D1 (3.1) BS01 rna N/A GO:0003735 ... N/A 37653241
    773839 8bhf:D3 (3.1) BS01 rna N/A GO:0003723 ... N/A 37653241
    773840 8bhf:E1 (3.1) BS01 rna ? GO:0003723 ... G1TYL6 37653241
    773841 8bhf:E1 (3.1) BS02 rna ? GO:0003723 ... G1TYL6 37653241
    773842 8bhf:E3 (3.1) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 37653241
    773843 8bhf:F1 (3.1) BS01 rna N/A GO:0003735 ... N/A 37653241
    773844 8bhf:F1 (3.1) BS02 rna N/A GO:0003735 ... N/A 37653241
    773845 8bhf:F3 (3.1) BS01 rna ? GO:0003723 ... G1TK17 37653241
    773846 8bhf:G1 (3.1) BS01 rna ? GO:0003735 ... G1SHQ2 37653241
    773847 8bhf:G1 (3.1) BS02 rna ? GO:0003735 ... G1SHQ2 37653241
    773848 8bhf:G3 (3.1) BS01 rna ? GO:0003723 ... G1TFM5 37653241
    773849 8bhf:H1 (3.1) BS01 rna N/A GO:0003735 ... N/A 37653241
    773850 8bhf:H3 (3.1) BS01 rna ? GO:0003735 ... G1TM55 37653241
    773851 8bhf:I1 (3.1) BS01 rna N/A GO:0003735 ... N/A 37653241
    773852 8bhf:I3 (3.1) BS01 rna N/A GO:0003735 ... N/A 37653241
    773853 8bhf:J1 (3.1) BS01 rna N/A GO:0003735 ... N/A 37653241
    773854 8bhf:J1 (3.1) BS02 rna N/A GO:0003735 ... N/A 37653241
    773855 8bhf:J3 (3.1) BS01 rna ? GO:0003735 ... G1TJW1 37653241
    773856 8bhf:J3 (3.1) BS02 rna ? GO:0003735 ... G1TJW1 37653241
    773857 8bhf:K1 (3.1) BS01 rna ? GO:0003735 ... G1SE76 37653241
    773858 8bhf:K1 (3.1) BS02 rna ? GO:0003735 ... G1SE76 37653241
    773859 8bhf:K3 (3.1) BS01 rna ? GO:0003723 ... B7NZS8 37653241
    773860 8bhf:L1 (3.1) BS01 rna ? GO:0003723 ... G1SQH0 37653241
    773861 8bhf:L1 (3.1) BS02 rna ? GO:0003723 ... G1SQH0 37653241
    773862 8bhf:L3 (3.1) BS01 rna ? N/A G1TPV3 37653241
    773863 8bhf:M1 (3.1) BS01 rna ? GO:0003735 ... G1TXF6 37653241
    773864 8bhf:M3 (3.1) BS01 rna ? GO:0003735 ... G1TRM4 37653241
    773865 8bhf:M3 (3.1) BS02 MG ? GO:0003735 ... G1TRM4 37653241
    773866 8bhf:N1 (3.1) BS01 rna ? GO:0003735 ... G1SNY0 37653241
    773867 8bhf:N3 (3.1) BS01 rna ? GO:0003735 ... G1SFR8 37653241
    773868 8bhf:O1 (3.1) BS01 rna ? GO:0003735 ... G1SGR6 37653241
    773869 8bhf:O3 (3.1) BS01 rna ? GO:0003735 ... G1SP51 37653241
    773870 8bhf:O3 (3.1) BS02 rna ? GO:0003735 ... G1SP51 37653241
    773871 8bhf:P1 (3.1) BS01 rna ? GO:0003723 ... G1TDL2 37653241
    773872 8bhf:P3 (3.1) BS01 rna ? GO:0003735 ... G1T1F0 37653241
    773873 8bhf:Q1 (3.1) BS01 rna ? GO:0003735 ... G1SHG0 37653241
    773874 8bhf:Q3 (3.1) BS01 rna ? GO:0003723 ... G1U0Q2 37653241
    773875 8bhf:Q3 (3.1) BS02 rna ? GO:0003723 ... G1U0Q2 37653241
    773876 8bhf:R1 (3.1) BS01 rna ? GO:0003735 ... G1TUN8 37653241
    773877 8bhf:R3 (3.1) BS01 rna ? GO:0000462 ... G1SGX4 37653241
    773878 8bhf:S1 (3.1) BS01 rna ? GO:0000049 ... G1SF08 37653241
    773879 8bhf:S3 (3.1) BS01 rna ? GO:0003735 ... G1TU13 37653241
    773880 8bhf:T1 (3.1) BS01 rna ? GO:0003735 ... G1TXG5 37653241
    773881 8bhf:T1 (3.1) BS02 ZN ? GO:0003735 ... G1TXG5 37653241
    773882 8bhf:T1 (3.1) BS03 MG ? GO:0003735 ... G1TXG5 37653241
    773883 8bhf:T3 (3.1) BS01 rna ? GO:0003676 ... G1TPG3 37653241
    773884 8bhf:U1 (3.1) BS01 rna ? GO:0000463 ... G1SIT5 37653241
    773885 8bhf:U1 (3.1) BS02 rna ? GO:0000463 ... G1SIT5 37653241
    773886 8bhf:U3 (3.1) BS01 rna ? GO:0000028 ... G1TN62 37653241
    773887 8bhf:V1 (3.1) BS01 rna ? GO:0003735 ... G1TBH2 37653241
    773888 8bhf:V3 (3.1) BS01 rna N/A GO:0003723 ... N/A 37653241
    773889 8bhf:W1 (3.1) BS01 rna ? GO:0003735 ... U3KPD5 37653241
    773890 8bhf:W1 (3.1) BS02 rna ? GO:0003735 ... U3KPD5 37653241
    773891 8bhf:W1 (3.1) BS03 ZN ? GO:0003735 ... U3KPD5 37653241
    773892 8bhf:X1 (3.1) BS01 rna ? GO:0003735 ... G1U001 37653241
    773893 8bhf:X3 (3.1) BS01 rna ? GO:0003735 ... G1TG89 37653241
    773894 8bhf:Y1 (3.1) BS01 rna ? GO:0003735 ... G1TTN1 37653241
    773895 8bhf:Y1 (3.1) BS02 rna ? GO:0003735 ... G1TTN1 37653241
    773896 8bhf:Y3 (3.1) BS01 rna ? GO:0003735 ... G1SZ47 37653241
    773897 8bhf:Z1 (3.1) BS01 rna N/A GO:0003735 ... N/A 37653241
    773898 8bhf:Z1 (3.1) BS02 ZN N/A GO:0003735 ... N/A 37653241
    773899 8bhf:Z3 (3.1) BS01 rna ? GO:0003735 ... G1T3D8 37653241
    773900 8bhf:a3 (3.1) BS01 rna ? N/A G1TDB3 37653241
    773901 8bhf:b1 (3.1) BS01 rna ? GO:0003735 ... G1T040 37653241
    773902 8bhf:b1 (3.1) BS02 ZN ? GO:0003735 ... G1T040 37653241
    773903 8bhf:b3 (3.1) BS01 rna N/A GO:0003735 ... N/A 37653241
    773904 8bhf:b3 (3.1) BS02 ZN N/A GO:0003735 ... N/A 37653241
    773905 8bhf:c1 (3.1) BS01 rna ? GO:0003735 ... G1SY53 37653241
    773906 8bhf:c1 (3.1) BS02 ZN ? GO:0003735 ... G1SY53 37653241
    773907 8bhf:c3 (3.1) BS01 rna ? GO:0003735 ... G1TZ76 37653241
    773908 8bhf:d1 (3.1) BS01 rna ? GO:0003735 ... G1U7L1 37653241
    773909 8bhf:d3 (3.1) BS01 rna ? GO:0000028 ... G1TIB4 37653241
    773910 8bhf:e1 (3.1) BS01 rna ? N/A G1SPK4 37653241
    773911 8bhf:e3 (3.1) BS01 rna ? GO:0002181 ... G1U7M4 37653241
    773912 8bhf:e3 (3.1) BS02 ZN ? GO:0002181 ... G1U7M4 37653241
    773913 8bhf:f1 (3.1) BS01 rna ? GO:0003723 ... G1SMR7 37653241
    773914 8bhf:f3 (3.1) BS01 rna ? GO:0003735 ... A0A5F9D9G5 37653241
    773915 8bhf:g3 (3.1) BS01 rna ? GO:0003735 ... G1SK22 37653241
    773916 8bhf:h3 (3.1) BS01 rna ? GO:0001891 ... G1SJB4 37653241
    773917 8bhf:j3 (3.1) BS01 rna N/A GO:0003735 ... N/A 37653241
    773918 8bhf:j3 (3.1) BS02 rna N/A GO:0003735 ... N/A 37653241
    773919 8bhf:j3 (3.1) BS03 MG N/A GO:0003735 ... N/A 37653241
    773920 8bhf:k3 (3.1) BS01 rna ? GO:0003723 ... G1TL06 37653241
    773921 8bhf:l1 (3.1) BS01 rna N/A GO:0003723 ... N/A 37653241
    773922 8bhf:l3 (3.1) BS01 rna ? GO:0003735 ... G1SVW5 37653241
    773923 8bhf:l3 (3.1) BS02 rna ? GO:0003735 ... G1SVW5 37653241
    773924 8bhf:m3 (3.1) BS01 rna ? GO:0000027 ... P19949 37653241
    773925 8bhf:m3 (3.1) BS02 rna ? GO:0000027 ... P19949 37653241
    773926 8bhf:n1 (3.1) BS01 rna ? GO:0005634 ... B7Z6J7 37653241
    773927 8bhf:n1 (3.1) BS02 rna ? GO:0005634 ... B7Z6J7 37653241
    773928 8bhf:n1 (3.1) BS03 rna ? GO:0005634 ... B7Z6J7 37653241
    773929 8bhf:n3 (3.1) BS01 rna ? GO:0003735 ... G1SKF7 37653241
    773930 8bhf:o3 (3.1) BS01 rna ? GO:0000463 ... G1SV32 37653241
    773931 8bhf:o3 (3.1) BS02 rna ? GO:0000463 ... G1SV32 37653241
    773932 8bhf:p3 (3.1) BS01 rna ? GO:0003723 ... G1STW0 37653241
    773933 8bhf:p3 (3.1) BS02 rna ? GO:0003723 ... G1STW0 37653241
    773934 8bhf:q3 (3.1) BS01 rna ? GO:0002181 ... G1SWI6 37653241
    773935 8bhf:r3 (3.1) BS01 rna ? GO:0003735 ... B7NZQ2 37653241
    773936 8bhf:r3 (3.1) BS02 rna ? GO:0003735 ... B7NZQ2 37653241
    773937 8bhf:s3 (3.1) BS01 rna ? GO:0003735 ... G1TUB8 37653241
    773938 8bhf:s3 (3.1) BS02 rna ? GO:0003735 ... G1TUB8 37653241
    773939 8bhf:s3 (3.1) BS03 rna ? GO:0003735 ... G1TUB8 37653241
    773940 8bhf:t3 (3.1) BS01 rna ? GO:0003723 ... G1TKB3 37653241
    773941 8bhf:t3 (3.1) BS02 rna ? GO:0003723 ... G1TKB3 37653241
    773942 8bhf:u3 (3.1) BS01 rna ? GO:0003723 ... G1SZ12 37653241
    773943 8bhg:A (2.39) BS01 QMU ? GO:0004888 ... P31644 37903907
    773944 8bhg:A (2.39) BS02 DMU ? GO:0004888 ... P31644 37903907
    773945 8bhg:A (2.39) BS03 QMU ? GO:0004888 ... P31644 37903907
    773946 8bhg:A (2.39) BS04 DMU ? GO:0004888 ... P31644 37903907
    773947 8bhg:B (2.39) BS01 QMU ? GO:0004888 ... P18507 37903907
    773948 8bhg:B (2.39) BS02 QMU ? GO:0004888 ... P18507 37903907
    773949 8bhg:B (2.39) BS03 DMU ? GO:0004888 ... P18507 37903907
    773950 8bhg:C (2.39) BS01 QMU ? GO:0004888 ... P31644 37903907
    773951 8bhg:C (2.39) BS02 DMU ? GO:0004888 ... P31644 37903907
    773952 8bhg:C (2.39) BS03 QMU ? GO:0004888 ... P31644 37903907
    773953 8bhg:D (2.39) BS01 QMU ? GO:0004888 ... P31644 37903907
    773954 8bhg:D (2.39) BS02 QMU ? GO:0004888 ... P31644 37903907
    773955 8bhg:D (2.39) BS03 DMU ? GO:0004888 ... P31644 37903907
    773956 8bhg:D (2.39) BS04 DMU ? GO:0004888 ... P31644 37903907
    773957 8bhg:E (2.39) BS01 QMU ? GO:0004888 ... P31644 37903907
    773958 8bhg:E (2.39) BS02 QMU ? GO:0004888 ... P31644 37903907
    773959 8bhg:E (2.39) BS03 DMU ? GO:0004888 ... P31644 37903907
    773960 8bhh:A (1.69) BS01 CA 3.1.1.-
    3.1.1.73
    GO:0030600 ... A0A2H3G048 36961270
    773961 8bhh:B (1.69) BS01 MAN 3.1.1.-
    3.1.1.73
    GO:0030600 ... A0A2H3G048 36961270
    773962 8bhh:B (1.69) BS02 MAN 3.1.1.-
    3.1.1.73
    GO:0030600 ... A0A2H3G048 36961270
    773963 8bhh:B (1.69) BS03 CA 3.1.1.-
    3.1.1.73
    GO:0030600 ... A0A2H3G048 36961270
    773964 8bhi:A (2.67) BS01 QKF ? GO:0004888 ... P31644 37903907
    773965 8bhi:A (2.67) BS02 QKF ? GO:0004888 ... P31644 37903907
    773966 8bhi:B (2.67) BS01 QKF ? GO:0004888 ... P31644 37903907
    773967 8bhi:B (2.67) BS02 QKF ? GO:0004888 ... P31644 37903907
    773968 8bhi:C (2.67) BS01 QKF ? GO:0004888 ... P31644 37903907
    773969 8bhi:C (2.67) BS02 QKF ? GO:0004888 ... P31644 37903907
    773970 8bhi:D (2.67) BS01 QKF ? GO:0004888 ... P31644 37903907
    773971 8bhi:D (2.67) BS02 QKF ? GO:0004888 ... P31644 37903907
    773972 8bhi:E (2.67) BS01 QKF ? GO:0004888 ... P31644 37903907
    773973 8bhi:E (2.67) BS02 QKF ? GO:0004888 ... P31644 37903907
    773974 8bhj:A (2.81) BS01 rna ? GO:0000027 ... P60422 37553384
    773975 8bhj:B (2.81) BS01 rna ? GO:0000027 ... P60438 37553384
    773976 8bhj:C (2.81) BS01 rna ? GO:0001070 ... P60723 37553384
    773977 8bhj:D (2.81) BS01 rna ? GO:0000027 ... P62399 37553384
    773978 8bhj:D (2.81) BS02 rna ? GO:0000027 ... P62399 37553384
    773979 8bhj:D (2.81) BS03 rna ? GO:0000027 ... P62399 37553384
    773980 8bhj:E (2.81) BS01 rna ? GO:0000027 ... P0AG55 37553384
    773981 8bhj:F (2.81) BS01 rna ? GO:0002181 ... P0A7R1 37553384
    773982 8bhj:G (2.81) BS01 rna ? GO:0002181 ... P0AA10 37553384
    773983 8bhj:H (2.81) BS01 rna ? GO:0002181 ... P0ADY3 37553384
    773984 8bhj:H (2.81) BS02 rna ? GO:0002181 ... P0ADY3 37553384
    773985 8bhj:I (2.81) BS01 rna ? GO:0002181 ... P02413 37553384
    773986 8bhj:J (2.81) BS01 rna ? GO:0000027 ... P0ADY7 37553384
    773987 8bhj:J (2.81) BS02 rna ? GO:0000027 ... P0ADY7 37553384
    773988 8bhj:K (2.81) BS01 rna ? GO:0000027 ... P0AG44 37553384
    773989 8bhj:L (2.81) BS01 rna ? GO:0002181 ... P0C018 37553384
    773990 8bhj:L (2.81) BS02 rna ? GO:0002181 ... P0C018 37553384
    773991 8bhj:M (2.81) BS01 rna ? GO:0000027 ... P0A7K6 37553384
    773992 8bhj:M (2.81) BS02 rna ? GO:0000027 ... P0A7K6 37553384
    773993 8bhj:N (2.81) BS01 rna ? GO:0000027 ... P0A7L3 37553384
    773994 8bhj:O (2.81) BS01 rna ? GO:0002181 ... P0AG48 37553384
    773995 8bhj:P (2.81) BS01 rna ? GO:0002181 ... P61175 37553384
    773996 8bhj:Q (2.81) BS01 rna ? GO:0000027 ... P0ADZ0 37553384
    773997 8bhj:R (2.81) BS01 rna ? GO:0000027 ... P60624 37553384
    773998 8bhj:S (2.81) BS01 rna ? GO:0000027 ... P68919 37553384
    773999 8bhj:T (2.81) BS01 rna ? GO:0000027 ... P0A7L8 37553384
    774000 8bhj:U (2.81) BS01 rna ? GO:0000027 ... P0A7M2 37553384

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).