SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    774001 8bhj:V (2.81) BS01 rna ? GO:0000027 ... P0A7M6 37553384
    774002 8bhj:W (2.81) BS01 rna ? GO:0000027 ... P0AG51 37553384
    774003 8bhj:a (2.81) BS01 rna ? GO:0000027 ... P0A7N4 37553384
    774004 8bhj:b (2.81) BS01 rna ? GO:0000027 ... P0A7N9 37553384
    774005 8bhj:c (2.81) BS01 rna ? GO:0002181 ... P0A7P5 37553384
    774006 8bhj:d (2.81) BS01 rna ? GO:0002181 ... P0A7Q1 37553384
    774007 8bhj:e (2.81) BS01 rna ? GO:0002181 ... P0A7Q6 37553384
    774008 8bhj:f (2.81) BS01 rna ? GO:0000028 ... P0A7V0 37553384
    774009 8bhj:g (2.81) BS01 rna ? GO:0000028 ... P0A7V3 37553384
    774010 8bhj:h (2.81) BS01 rna ? GO:0000028 ... P0A7V8 37553384
    774011 8bhj:i (2.81) BS01 rna ? GO:0000028 ... P0A7W1 37553384
    774012 8bhj:j (2.81) BS01 rna ? GO:0002181 ... P02358 37553384
    774013 8bhj:k (2.81) BS01 rna ? GO:0000028 ... P02359 37553384
    774014 8bhj:l (2.81) BS01 rna ? GO:0000028 ... P0A7W7 37553384
    774015 8bhj:m (2.81) BS01 rna ? GO:0000049 ... P0A7X3 37553384
    774016 8bhj:m (2.81) BS02 rna ? GO:0000049 ... P0A7X3 37553384
    774017 8bhj:n (2.81) BS01 rna ? GO:0000049 ... P0A7R5 37553384
    774018 8bhj:o (2.81) BS01 rna ? GO:0002181 ... P0A7R9 37553384
    774019 8bhj:p (2.81) BS01 rna ? GO:0000049 ... P0A7S3 37553384
    774020 8bhj:q (2.81) BS01 rna ? GO:0000049 ... P0A7S9 37553384
    774021 8bhj:r (2.81) BS01 rna ? GO:0000028 ... P0AG59 37553384
    774022 8bhj:s (2.81) BS01 rna ? GO:0000028 ... P0ADZ4 37553384
    774023 8bhj:t (2.81) BS01 rna ? GO:0000028 ... P0A7T3 37553384
    774024 8bhj:u (2.81) BS01 rna ? GO:0000028 ... P0AG63 37553384
    774025 8bhj:v (2.81) BS01 rna ? GO:0002181 ... P0A7T7 37553384
    774026 8bhj:w (2.81) BS01 rna ? GO:0000028 ... P0A7U3 37553384
    774027 8bhj:x (2.81) BS01 rna ? GO:0000028 ... P0A7U7 37553384
    774028 8bhj:y (2.81) BS01 rna ? GO:0000028 ... P68679 37553384
    774029 8bhk:A (3.3) BS01 DZP ? GO:0004888 ... P31644 37903907
    774030 8bhk:B (3.3) BS01 DZP ? GO:0004888 ... P31644 37903907
    774031 8bhk:C (3.3) BS01 DZP ? GO:0004888 ... P31644 37903907
    774032 8bhk:D (3.3) BS01 DZP ? GO:0004888 ... P31644 37903907
    774033 8bhk:E (3.3) BS01 DZP ? GO:0004888 ... P31644 37903907
    774034 8bhl:A (2.21) BS01 rna ? GO:0000027 ... P60422 37553384
    774035 8bhl:B (2.21) BS01 rna ? GO:0000027 ... P60438 37553384
    774036 8bhl:C (2.21) BS01 rna ? GO:0001070 ... P60723 37553384
    774037 8bhl:D (2.21) BS01 rna ? GO:0000027 ... P62399 37553384
    774038 8bhl:D (2.21) BS02 rna ? GO:0000027 ... P62399 37553384
    774039 8bhl:D (2.21) BS03 rna ? GO:0000027 ... P62399 37553384
    774040 8bhl:E (2.21) BS01 rna ? GO:0000027 ... P0AG55 37553384
    774041 8bhl:F (2.21) BS01 rna ? GO:0002181 ... P0A7R1 37553384
    774042 8bhl:G (2.21) BS01 rna ? GO:0002181 ... P0AA10 37553384
    774043 8bhl:H (2.21) BS01 rna ? GO:0002181 ... P0ADY3 37553384
    774044 8bhl:H (2.21) BS02 rna ? GO:0002181 ... P0ADY3 37553384
    774045 8bhl:I (2.21) BS01 rna ? GO:0002181 ... P02413 37553384
    774046 8bhl:J (2.21) BS01 rna ? GO:0000027 ... P0ADY7 37553384
    774047 8bhl:K (2.21) BS01 rna ? GO:0000027 ... P0AG44 37553384
    774048 8bhl:L (2.21) BS01 rna ? GO:0002181 ... P0C018 37553384
    774049 8bhl:L (2.21) BS02 rna ? GO:0002181 ... P0C018 37553384
    774050 8bhl:M (2.21) BS01 rna ? GO:0000027 ... P0A7K6 37553384
    774051 8bhl:M (2.21) BS02 rna ? GO:0000027 ... P0A7K6 37553384
    774052 8bhl:N (2.21) BS01 rna ? GO:0000027 ... P0A7L3 37553384
    774053 8bhl:O (2.21) BS01 rna ? GO:0002181 ... P0AG48 37553384
    774054 8bhl:P (2.21) BS01 rna ? GO:0002181 ... P61175 37553384
    774055 8bhl:Q (2.21) BS01 rna ? GO:0000027 ... P0ADZ0 37553384
    774056 8bhl:R (2.21) BS01 rna ? GO:0000027 ... P60624 37553384
    774057 8bhl:S (2.21) BS01 rna ? GO:0000027 ... P68919 37553384
    774058 8bhl:T (2.21) BS01 rna ? GO:0000027 ... P0A7L8 37553384
    774059 8bhl:U (2.21) BS01 rna ? GO:0000027 ... P0A7M2 37553384
    774060 8bhl:V (2.21) BS01 rna ? GO:0000027 ... P0A7M6 37553384
    774061 8bhl:W (2.21) BS01 rna ? GO:0000027 ... P0AG51 37553384
    774062 8bhl:a (2.21) BS01 rna ? GO:0000027 ... P0A7N4 37553384
    774063 8bhl:b (2.21) BS01 rna ? GO:0000027 ... P0A7N9 37553384
    774064 8bhl:c (2.21) BS01 rna ? GO:0002181 ... P0A7P5 37553384
    774065 8bhl:d (2.21) BS01 rna ? GO:0002181 ... P0A7Q1 37553384
    774066 8bhl:e (2.21) BS01 rna ? GO:0002181 ... P0A7Q6 37553384
    774067 8bhl:f (2.21) BS01 rna ? GO:0000028 ... P0A7V0 37553384
    774068 8bhl:g (2.21) BS01 rna ? GO:0000028 ... P0A7V3 37553384
    774069 8bhl:h (2.21) BS01 rna ? GO:0000028 ... P0A7V8 37553384
    774070 8bhl:i (2.21) BS01 rna ? GO:0000028 ... P0A7W1 37553384
    774071 8bhl:j (2.21) BS01 rna ? GO:0002181 ... P02358 37553384
    774072 8bhl:k (2.21) BS01 rna ? GO:0000028 ... P02359 37553384
    774073 8bhl:l (2.21) BS01 rna ? GO:0000028 ... P0A7W7 37553384
    774074 8bhl:m (2.21) BS01 rna ? GO:0000049 ... P0A7X3 37553384
    774075 8bhl:m (2.21) BS02 rna ? GO:0000049 ... P0A7X3 37553384
    774076 8bhl:n (2.21) BS01 rna ? GO:0000049 ... P0A7R5 37553384
    774077 8bhl:o (2.21) BS01 rna ? GO:0002181 ... P0A7R9 37553384
    774078 8bhl:p (2.21) BS01 rna ? GO:0000049 ... P0A7S3 37553384
    774079 8bhl:q (2.21) BS01 rna ? GO:0000049 ... P0A7S9 37553384
    774080 8bhl:r (2.21) BS01 rna ? GO:0000028 ... P0AG59 37553384
    774081 8bhl:s (2.21) BS01 rna ? GO:0000028 ... P0ADZ4 37553384
    774082 8bhl:s (2.21) BS02 rna ? GO:0000028 ... P0ADZ4 37553384
    774083 8bhl:t (2.21) BS01 rna ? GO:0000028 ... P0A7T3 37553384
    774084 8bhl:u (2.21) BS01 rna ? GO:0000028 ... P0AG63 37553384
    774085 8bhl:v (2.21) BS01 rna ? GO:0002181 ... P0A7T7 37553384
    774086 8bhl:w (2.21) BS01 rna ? GO:0000028 ... P0A7U3 37553384
    774087 8bhl:x (2.21) BS01 rna ? GO:0000028 ... P0A7U7 37553384
    774088 8bhl:y (2.21) BS01 rna ? GO:0000028 ... P68679 37553384
    774089 8bhm:A (2.95) BS01 R63 ? GO:0004888 ... P31644 37903907
    774090 8bhm:A (2.95) BS02 R63 ? GO:0004888 ... P31644 37903907
    774091 8bhm:B (2.95) BS01 R63 ? GO:0004888 ... P31644 37903907
    774092 8bhm:B (2.95) BS02 R63 ? GO:0004888 ... P31644 37903907
    774093 8bhm:C (2.95) BS01 R63 ? GO:0004888 ... P31644 37903907
    774094 8bhm:C (2.95) BS02 R63 ? GO:0004888 ... P31644 37903907
    774095 8bhm:D (2.95) BS01 R63 ? GO:0004888 ... P31644 37903907
    774096 8bhm:D (2.95) BS02 R63 ? GO:0004888 ... P31644 37903907
    774097 8bhm:E (2.95) BS01 R63 ? GO:0004888 ... P31644 37903907
    774098 8bhm:E (2.95) BS02 R63 ? GO:0004888 ... P31644 37903907
    774099 8bhn:A (2.85) BS01 rna ? GO:0000027 ... P60422 37553384
    774100 8bhn:B (2.85) BS01 rna ? GO:0000027 ... P60438 37553384
    774101 8bhn:C (2.85) BS01 rna ? GO:0001070 ... P60723 37553384
    774102 8bhn:D (2.85) BS01 rna ? GO:0000027 ... P62399 37553384
    774103 8bhn:D (2.85) BS02 rna ? GO:0000027 ... P62399 37553384
    774104 8bhn:D (2.85) BS03 rna ? GO:0000027 ... P62399 37553384
    774105 8bhn:E (2.85) BS01 rna ? GO:0000027 ... P0AG55 37553384
    774106 8bhn:F (2.85) BS01 rna ? GO:0002181 ... P0A7R1 37553384
    774107 8bhn:G (2.85) BS01 rna ? GO:0002181 ... P0AA10 37553384
    774108 8bhn:H (2.85) BS01 rna ? GO:0002181 ... P0ADY3 37553384
    774109 8bhn:I (2.85) BS01 rna ? GO:0002181 ... P02413 37553384
    774110 8bhn:J (2.85) BS01 rna ? GO:0000027 ... P0ADY7 37553384
    774111 8bhn:J (2.85) BS02 rna ? GO:0000027 ... P0ADY7 37553384
    774112 8bhn:J (2.85) BS03 rna ? GO:0000027 ... P0ADY7 37553384
    774113 8bhn:K (2.85) BS01 rna ? GO:0000027 ... P0AG44 37553384
    774114 8bhn:L (2.85) BS01 rna ? GO:0002181 ... P0C018 37553384
    774115 8bhn:L (2.85) BS02 rna ? GO:0002181 ... P0C018 37553384
    774116 8bhn:M (2.85) BS01 rna ? GO:0000027 ... P0A7K6 37553384
    774117 8bhn:M (2.85) BS02 rna ? GO:0000027 ... P0A7K6 37553384
    774118 8bhn:N (2.85) BS01 rna ? GO:0000027 ... P0A7L3 37553384
    774119 8bhn:O (2.85) BS01 rna ? GO:0002181 ... P0AG48 37553384
    774120 8bhn:P (2.85) BS01 rna ? GO:0002181 ... P61175 37553384
    774121 8bhn:Q (2.85) BS01 rna ? GO:0000027 ... P0ADZ0 37553384
    774122 8bhn:R (2.85) BS01 rna ? GO:0000027 ... P60624 37553384
    774123 8bhn:S (2.85) BS01 rna ? GO:0000027 ... P68919 37553384
    774124 8bhn:T (2.85) BS01 rna ? GO:0000027 ... P0A7L8 37553384
    774125 8bhn:T (2.85) BS02 rna ? GO:0000027 ... P0A7L8 37553384
    774126 8bhn:U (2.85) BS01 rna ? GO:0000027 ... P0A7M2 37553384
    774127 8bhn:V (2.85) BS01 rna ? GO:0000027 ... P0A7M6 37553384
    774128 8bhn:W (2.85) BS01 rna ? GO:0000027 ... P0AG51 37553384
    774129 8bhn:X (2.85) BS01 rna ? GO:0002181 ... P0A7M9 37553384
    774130 8bhn:X (2.85) BS02 rna ? GO:0002181 ... P0A7M9 37553384
    774131 8bhn:a (2.85) BS01 rna ? GO:0000027 ... P0A7N4 37553384
    774132 8bhn:b (2.85) BS01 rna ? GO:0000027 ... P0A7N9 37553384
    774133 8bhn:c (2.85) BS01 rna ? GO:0002181 ... P0A7P5 37553384
    774134 8bhn:d (2.85) BS01 rna ? GO:0002181 ... P0A7Q1 37553384
    774135 8bhn:e (2.85) BS01 rna ? GO:0002181 ... P0A7Q6 37553384
    774136 8bhn:f (2.85) BS01 rna ? GO:0000028 ... P0A7V0 37553384
    774137 8bhn:g (2.85) BS01 rna ? GO:0000028 ... P0A7V3 37553384
    774138 8bhn:h (2.85) BS01 rna ? GO:0000028 ... P0A7V8 37553384
    774139 8bhn:i (2.85) BS01 rna ? GO:0000028 ... P0A7W1 37553384
    774140 8bhn:j (2.85) BS01 rna ? GO:0002181 ... P02358 37553384
    774141 8bhn:k (2.85) BS01 rna ? GO:0000028 ... P02359 37553384
    774142 8bhn:k (2.85) BS02 rna ? GO:0000028 ... P02359 37553384
    774143 8bhn:l (2.85) BS01 rna ? GO:0000028 ... P0A7W7 37553384
    774144 8bhn:m (2.85) BS01 rna ? GO:0000049 ... P0A7X3 37553384
    774145 8bhn:n (2.85) BS01 rna ? GO:0000049 ... P0A7R5 37553384
    774146 8bhn:o (2.85) BS01 rna ? GO:0002181 ... P0A7R9 37553384
    774147 8bhn:p (2.85) BS01 rna ? GO:0000049 ... P0A7S3 37553384
    774148 8bhn:q (2.85) BS01 rna ? GO:0000049 ... P0A7S9 37553384
    774149 8bhn:r (2.85) BS01 rna ? GO:0000028 ... P0AG59 37553384
    774150 8bhn:s (2.85) BS01 rna ? GO:0000028 ... P0ADZ4 37553384
    774151 8bhn:s (2.85) BS02 rna ? GO:0000028 ... P0ADZ4 37553384
    774152 8bhn:t (2.85) BS01 rna ? GO:0000028 ... P0A7T3 37553384
    774153 8bhn:u (2.85) BS01 rna ? GO:0000028 ... P0AG63 37553384
    774154 8bhn:v (2.85) BS01 rna ? GO:0002181 ... P0A7T7 37553384
    774155 8bhn:w (2.85) BS01 rna ? GO:0000028 ... P0A7U3 37553384
    774156 8bhn:x (2.85) BS01 rna ? GO:0000028 ... P0A7U7 37553384
    774157 8bhn:y (2.85) BS01 rna ? GO:0000028 ... P68679 37553384
    774158 8bho:A (2.93) BS01 QMJ ? GO:0004888 ... P31644 37903907
    774159 8bho:A (2.93) BS02 QMJ ? GO:0004888 ... P31644 37903907
    774160 8bho:B (2.93) BS01 QMJ ? GO:0004888 ... P31644 37903907
    774161 8bho:B (2.93) BS02 QMJ ? GO:0004888 ... P31644 37903907
    774162 8bho:C (2.93) BS01 QMJ ? GO:0004888 ... P31644 37903907
    774163 8bho:C (2.93) BS02 QMJ ? GO:0004888 ... P31644 37903907
    774164 8bho:D (2.93) BS01 QMJ ? GO:0004888 ... P31644 37903907
    774165 8bho:D (2.93) BS02 QMJ ? GO:0004888 ... P31644 37903907
    774166 8bho:E (2.93) BS01 QMJ ? GO:0004888 ... P31644 37903907
    774167 8bho:E (2.93) BS02 QMJ ? GO:0004888 ... P31644 37903907
    774168 8bhp:A (2.37) BS01 rna ? GO:0000027 ... P60422 37553384
    774169 8bhp:B (2.37) BS01 rna ? GO:0000027 ... P60438 37553384
    774170 8bhp:C (2.37) BS01 rna ? GO:0001070 ... P60723 37553384
    774171 8bhp:D (2.37) BS01 rna ? GO:0000027 ... P62399 37553384
    774172 8bhp:D (2.37) BS02 rna ? GO:0000027 ... P62399 37553384
    774173 8bhp:D (2.37) BS03 rna ? GO:0000027 ... P62399 37553384
    774174 8bhp:E (2.37) BS01 rna ? GO:0000027 ... P0AG55 37553384
    774175 8bhp:F (2.37) BS01 rna ? GO:0002181 ... P0A7R1 37553384
    774176 8bhp:G (2.37) BS01 rna ? GO:0002181 ... P0AA10 37553384
    774177 8bhp:H (2.37) BS01 rna ? GO:0002181 ... P0ADY3 37553384
    774178 8bhp:H (2.37) BS02 rna ? GO:0002181 ... P0ADY3 37553384
    774179 8bhp:I (2.37) BS01 rna ? GO:0002181 ... P02413 37553384
    774180 8bhp:J (2.37) BS01 rna ? GO:0000027 ... P0ADY7 37553384
    774181 8bhp:K (2.37) BS01 rna ? GO:0000027 ... P0AG44 37553384
    774182 8bhp:L (2.37) BS01 rna ? GO:0002181 ... P0C018 37553384
    774183 8bhp:L (2.37) BS02 rna ? GO:0002181 ... P0C018 37553384
    774184 8bhp:M (2.37) BS01 rna ? GO:0000027 ... P0A7K6 37553384
    774185 8bhp:M (2.37) BS02 rna ? GO:0000027 ... P0A7K6 37553384
    774186 8bhp:N (2.37) BS01 rna ? GO:0000027 ... P0A7L3 37553384
    774187 8bhp:O (2.37) BS01 rna ? GO:0002181 ... P0AG48 37553384
    774188 8bhp:P (2.37) BS01 rna ? GO:0002181 ... P61175 37553384
    774189 8bhp:Q (2.37) BS01 rna ? GO:0000027 ... P0ADZ0 37553384
    774190 8bhp:R (2.37) BS01 rna ? GO:0000027 ... P60624 37553384
    774191 8bhp:S (2.37) BS01 rna ? GO:0000027 ... P68919 37553384
    774192 8bhp:T (2.37) BS01 rna ? GO:0000027 ... P0A7L8 37553384
    774193 8bhp:U (2.37) BS01 rna ? GO:0000027 ... P0A7M2 37553384
    774194 8bhp:V (2.37) BS01 rna ? GO:0000027 ... P0A7M6 37553384
    774195 8bhp:W (2.37) BS01 rna ? GO:0000027 ... P0AG51 37553384
    774196 8bhp:X (2.37) BS01 rna ? GO:0002181 ... P0A7M9 37553384
    774197 8bhp:X (2.37) BS02 rna ? GO:0002181 ... P0A7M9 37553384
    774198 8bhp:a (2.37) BS01 rna ? GO:0000027 ... P0A7N4 37553384
    774199 8bhp:b (2.37) BS01 rna ? GO:0000027 ... P0A7N9 37553384
    774200 8bhp:c (2.37) BS01 rna ? GO:0002181 ... P0A7P5 37553384

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).