SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    774401 8bil:M (2.04) BS01 rna ? GO:0000027 ... P0A7K6 37553384
    774402 8bil:M (2.04) BS02 rna ? GO:0000027 ... P0A7K6 37553384
    774403 8bil:N (2.04) BS01 rna ? GO:0000027 ... P0A7L3 37553384
    774404 8bil:O (2.04) BS01 rna ? GO:0002181 ... P0AG48 37553384
    774405 8bil:P (2.04) BS01 rna ? GO:0002181 ... P61175 37553384
    774406 8bil:Q (2.04) BS01 rna ? GO:0000027 ... P0ADZ0 37553384
    774407 8bil:R (2.04) BS01 rna ? GO:0000027 ... P60624 37553384
    774408 8bil:S (2.04) BS01 rna ? GO:0000027 ... P68919 37553384
    774409 8bil:T (2.04) BS01 rna ? GO:0000027 ... P0A7L8 37553384
    774410 8bil:T (2.04) BS02 rna ? GO:0000027 ... P0A7L8 37553384
    774411 8bil:U (2.04) BS01 rna ? GO:0000027 ... P0A7M2 37553384
    774412 8bil:V (2.04) BS01 rna ? GO:0000027 ... P0A7M6 37553384
    774413 8bil:W (2.04) BS01 rna ? GO:0000027 ... P0AG51 37553384
    774414 8bil:X (2.04) BS01 rna ? GO:0002181 ... P0A7M9 37553384
    774415 8bil:a (2.04) BS01 rna ? GO:0000027 ... P0A7N4 37553384
    774416 8bil:b (2.04) BS01 rna ? GO:0000027 ... P0A7N9 37553384
    774417 8bil:c (2.04) BS01 rna ? GO:0002181 ... P0A7P5 37553384
    774418 8bil:d (2.04) BS01 rna ? GO:0002181 ... P0A7Q1 37553384
    774419 8bil:e (2.04) BS01 rna ? GO:0002181 ... P0A7Q6 37553384
    774420 8bil:f (2.04) BS01 rna ? GO:0000028 ... P0A7V0 37553384
    774421 8bil:g (2.04) BS01 rna ? GO:0000028 ... P0A7V3 37553384
    774422 8bil:h (2.04) BS01 rna ? GO:0000028 ... P0A7V8 37553384
    774423 8bil:i (2.04) BS01 rna ? GO:0000028 ... P0A7W1 37553384
    774424 8bil:j (2.04) BS01 rna ? GO:0002181 ... P02358 37553384
    774425 8bil:k (2.04) BS01 rna ? GO:0000028 ... P02359 37553384
    774426 8bil:l (2.04) BS01 rna ? GO:0000028 ... P0A7W7 37553384
    774427 8bil:m (2.04) BS01 rna ? GO:0000049 ... P0A7X3 37553384
    774428 8bil:m (2.04) BS02 rna ? GO:0000049 ... P0A7X3 37553384
    774429 8bil:n (2.04) BS01 rna ? GO:0000049 ... P0A7R5 37553384
    774430 8bil:o (2.04) BS01 rna ? GO:0002181 ... P0A7R9 37553384
    774431 8bil:p (2.04) BS01 rna ? GO:0000049 ... P0A7S3 37553384
    774432 8bil:q (2.04) BS01 rna ? GO:0000049 ... P0A7S9 37553384
    774433 8bil:r (2.04) BS01 rna ? GO:0000028 ... P0AG59 37553384
    774434 8bil:s (2.04) BS01 rna ? GO:0000028 ... P0ADZ4 37553384
    774435 8bil:s (2.04) BS02 rna ? GO:0000028 ... P0ADZ4 37553384
    774436 8bil:t (2.04) BS01 rna ? GO:0000028 ... P0A7T3 37553384
    774437 8bil:u (2.04) BS01 rna ? GO:0000028 ... P0AG63 37553384
    774438 8bil:v (2.04) BS01 rna ? GO:0002181 ... P0A7T7 37553384
    774439 8bil:w (2.04) BS01 rna ? GO:0000028 ... P0A7U3 37553384
    774440 8bil:x (2.04) BS01 rna ? GO:0000028 ... P0A7U7 37553384
    774441 8bil:y (2.04) BS01 rna ? GO:0000028 ... P68679 37553384
    774442 8bim:A (2.04) BS01 rna ? GO:0000027 ... P60422 37553384
    774443 8bim:B (2.04) BS01 rna ? GO:0000027 ... P60438 37553384
    774444 8bim:C (2.04) BS01 rna ? GO:0001070 ... P60723 37553384
    774445 8bim:D (2.04) BS01 rna ? GO:0000027 ... P62399 37553384
    774446 8bim:D (2.04) BS02 rna ? GO:0000027 ... P62399 37553384
    774447 8bim:D (2.04) BS03 rna ? GO:0000027 ... P62399 37553384
    774448 8bim:E (2.04) BS01 rna ? GO:0000027 ... P0AG55 37553384
    774449 8bim:F (2.04) BS01 rna ? GO:0002181 ... P0A7R1 37553384
    774450 8bim:G (2.04) BS01 rna ? GO:0002181 ... P0AA10 37553384
    774451 8bim:H (2.04) BS01 rna ? GO:0002181 ... P0ADY3 37553384
    774452 8bim:I (2.04) BS01 rna ? GO:0002181 ... P02413 37553384
    774453 8bim:J (2.04) BS01 rna ? GO:0000027 ... P0ADY7 37553384
    774454 8bim:K (2.04) BS01 rna ? GO:0000027 ... P0AG44 37553384
    774455 8bim:L (2.04) BS01 rna ? GO:0002181 ... P0C018 37553384
    774456 8bim:L (2.04) BS02 rna ? GO:0002181 ... P0C018 37553384
    774457 8bim:M (2.04) BS01 rna ? GO:0000027 ... P0A7K6 37553384
    774458 8bim:M (2.04) BS02 rna ? GO:0000027 ... P0A7K6 37553384
    774459 8bim:N (2.04) BS01 rna ? GO:0000027 ... P0A7L3 37553384
    774460 8bim:O (2.04) BS01 rna ? GO:0002181 ... P0AG48 37553384
    774461 8bim:P (2.04) BS01 rna ? GO:0002181 ... P61175 37553384
    774462 8bim:Q (2.04) BS01 rna ? GO:0000027 ... P0ADZ0 37553384
    774463 8bim:R (2.04) BS01 rna ? GO:0000027 ... P60624 37553384
    774464 8bim:S (2.04) BS01 rna ? GO:0000027 ... P68919 37553384
    774465 8bim:T (2.04) BS01 rna ? GO:0000027 ... P0A7L8 37553384
    774466 8bim:T (2.04) BS02 rna ? GO:0000027 ... P0A7L8 37553384
    774467 8bim:U (2.04) BS01 rna ? GO:0000027 ... P0A7M2 37553384
    774468 8bim:V (2.04) BS01 rna ? GO:0000027 ... P0A7M6 37553384
    774469 8bim:W (2.04) BS01 rna ? GO:0000027 ... P0AG51 37553384
    774470 8bim:X (2.04) BS01 rna ? GO:0002181 ... P0A7M9 37553384
    774471 8bim:a (2.04) BS01 rna ? GO:0000027 ... P0A7N4 37553384
    774472 8bim:b (2.04) BS01 rna ? GO:0000027 ... P0A7N9 37553384
    774473 8bim:c (2.04) BS01 rna ? GO:0002181 ... P0A7P5 37553384
    774474 8bim:d (2.04) BS01 rna ? GO:0002181 ... P0A7Q1 37553384
    774475 8bim:e (2.04) BS01 rna ? GO:0002181 ... P0A7Q6 37553384
    774476 8bim:f (2.04) BS01 rna ? GO:0000028 ... P0A7V0 37553384
    774477 8bim:g (2.04) BS01 rna ? GO:0000028 ... P0A7V3 37553384
    774478 8bim:h (2.04) BS01 rna ? GO:0000028 ... P0A7V8 37553384
    774479 8bim:i (2.04) BS01 rna ? GO:0000028 ... P0A7W1 37553384
    774480 8bim:j (2.04) BS01 rna ? GO:0002181 ... P02358 37553384
    774481 8bim:k (2.04) BS01 rna ? GO:0000028 ... P02359 37553384
    774482 8bim:l (2.04) BS01 rna ? GO:0000028 ... P0A7W7 37553384
    774483 8bim:m (2.04) BS01 rna ? GO:0000049 ... P0A7X3 37553384
    774484 8bim:m (2.04) BS02 rna ? GO:0000049 ... P0A7X3 37553384
    774485 8bim:n (2.04) BS01 rna ? GO:0000049 ... P0A7R5 37553384
    774486 8bim:o (2.04) BS01 rna ? GO:0002181 ... P0A7R9 37553384
    774487 8bim:p (2.04) BS01 rna ? GO:0000049 ... P0A7S3 37553384
    774488 8bim:q (2.04) BS01 rna ? GO:0000049 ... P0A7S9 37553384
    774489 8bim:r (2.04) BS01 rna ? GO:0000028 ... P0AG59 37553384
    774490 8bim:s (2.04) BS01 rna ? GO:0000028 ... P0ADZ4 37553384
    774491 8bim:s (2.04) BS02 rna ? GO:0000028 ... P0ADZ4 37553384
    774492 8bim:t (2.04) BS01 rna ? GO:0000028 ... P0A7T3 37553384
    774493 8bim:u (2.04) BS01 rna ? GO:0000028 ... P0AG63 37553384
    774494 8bim:v (2.04) BS01 rna ? GO:0002181 ... P0A7T7 37553384
    774495 8bim:w (2.04) BS01 rna ? GO:0000028 ... P0A7U3 37553384
    774496 8bim:x (2.04) BS01 rna ? GO:0000028 ... P0A7U7 37553384
    774497 8bim:y (2.04) BS01 rna ? GO:0000028 ... P68679 37553384
    774498 8bin:A (1.5) BS01 QRR 2.7.10.1 GO:0004672 ... P29317 37094449
    774499 8bio:A (1.6) BS01 QRD 2.7.10.1 GO:0004672 ... P29317 37094449
    774500 8bip:B (3.1) BS01 rna ? GO:0000001 ... Q12387 37079644
    774501 8bip:LA (3.1) BS01 rna ? GO:0002181 ... P0CX45 37079644
    774502 8bip:LA (3.1) BS02 MG ? GO:0002181 ... P0CX45 37079644
    774503 8bip:LB (3.1) BS01 rna ? GO:0000027 ... P14126 37079644
    774504 8bip:LC (3.1) BS01 rna ? GO:0002181 ... P10664 37079644
    774505 8bip:LC (3.1) BS02 rna ? GO:0002181 ... P10664 37079644
    774506 8bip:LD (3.1) BS01 rna ? GO:0000027 ... P26321 37079644
    774507 8bip:LD (3.1) BS02 rna ? GO:0000027 ... P26321 37079644
    774508 8bip:LE (3.1) BS01 rna ? GO:0000027 ... P05739 37079644
    774509 8bip:LF (3.1) BS01 rna ? GO:0000463 ... P05737 37079644
    774510 8bip:LF (3.1) BS02 rna ? GO:0000463 ... P05737 37079644
    774511 8bip:LG (3.1) BS01 rna ? GO:0000470 ... P17076 37079644
    774512 8bip:LG (3.1) BS02 rna ? GO:0000470 ... P17076 37079644
    774513 8bip:LH (3.1) BS01 rna ? GO:0002181 ... P05738 37079644
    774514 8bip:LI (3.1) BS01 rna ? GO:0000027 ... P41805 37079644
    774515 8bip:LI (3.1) BS02 rna ? GO:0000027 ... P41805 37079644
    774516 8bip:LJ (3.1) BS01 rna ? GO:0000027 ... Q3E757 37079644
    774517 8bip:LJ (3.1) BS02 rna ? GO:0000027 ... Q3E757 37079644
    774518 8bip:LL (3.1) BS01 rna ? GO:0002181 ... Q12690 37079644
    774519 8bip:LL (3.1) BS02 rna ? GO:0002181 ... Q12690 37079644
    774520 8bip:LM (3.1) BS01 rna ? GO:0000027 ... P36105 37079644
    774521 8bip:LN (3.1) BS01 rna ? GO:0002181 ... P05748 37079644
    774522 8bip:LN (3.1) BS02 rna ? GO:0002181 ... P05748 37079644
    774523 8bip:LO (3.1) BS01 rna ? GO:0000470 ... P26784 37079644
    774524 8bip:LP (3.1) BS01 rna ? GO:0000448 ... P05740 37079644
    774525 8bip:LP (3.1) BS02 rna ? GO:0000448 ... P05740 37079644
    774526 8bip:LQ (3.1) BS01 rna ? GO:0002181 ... P0CX49 37079644
    774527 8bip:LR (3.1) BS01 rna ? GO:0002181 ... P0CX82 37079644
    774528 8bip:LS (3.1) BS01 rna ? GO:0002181 ... P0CX23 37079644
    774529 8bip:LS (3.1) BS02 rna ? GO:0002181 ... P0CX23 37079644
    774530 8bip:LT (3.1) BS01 rna ? GO:0002181 ... Q02753 37079644
    774531 8bip:LT (3.1) BS02 rna ? GO:0002181 ... Q02753 37079644
    774532 8bip:LU (3.1) BS01 rna ? GO:0003735 ... P05749 37079644
    774533 8bip:LV (3.1) BS01 rna ? GO:0002181 ... P0CX41 37079644
    774534 8bip:LW (3.1) BS01 rna ? GO:0003735 ... P04449 37079644
    774535 8bip:LX (3.1) BS01 rna ? GO:0003735 ... P04456 37079644
    774536 8bip:LX (3.1) BS02 rna ? GO:0003735 ... P04456 37079644
    774537 8bip:LY (3.1) BS01 rna ? GO:0002181 ... P05743 37079644
    774538 8bip:LY (3.1) BS02 rna ? GO:0002181 ... P05743 37079644
    774539 8bip:LZ (3.1) BS01 rna ? GO:0002181 ... P0C2H6 37079644
    774540 8bip:La (3.1) BS01 rna ? GO:0002181 ... P02406 37079644
    774541 8bip:Lb (3.1) BS01 rna ? GO:0002181 ... P05747 37079644
    774542 8bip:Lc (3.1) BS01 rna ? GO:0002181 ... P14120 37079644
    774543 8bip:Ld (3.1) BS01 rna ? GO:0002181 ... P0C2H8 37079644
    774544 8bip:Le (3.1) BS01 rna ? GO:0002181 ... P38061 37079644
    774545 8bip:Le (3.1) BS02 MG ? GO:0002181 ... P38061 37079644
    774546 8bip:Lf (3.1) BS01 rna ? GO:0000027 ... P05744 37079644
    774547 8bip:Lg (3.1) BS01 rna ? GO:0002181 ... P87262 37079644
    774548 8bip:Lg (3.1) BS02 ZN ? GO:0002181 ... P87262 37079644
    774549 8bip:Lh (3.1) BS01 rna ? GO:0000463 ... P0CX84 37079644
    774550 8bip:Lh (3.1) BS02 rna ? GO:0000463 ... P0CX84 37079644
    774551 8bip:Li (3.1) BS01 rna ? GO:0002181 ... P05745 37079644
    774552 8bip:Lj (3.1) BS01 rna ? GO:0000448 ... P49166 37079644
    774553 8bip:Lj (3.1) BS02 rna ? GO:0000448 ... P49166 37079644
    774554 8bip:Lj (3.1) BS03 ZN ? GO:0000448 ... P49166 37079644
    774555 8bip:Lk (3.1) BS01 rna ? GO:0002181 ... P49167 37079644
    774556 8bip:Ll (3.1) BS01 rna ? GO:0002181 ... P04650 37079644
    774557 8bip:Ll (3.1) BS02 rna ? GO:0002181 ... P04650 37079644
    774558 8bip:Lm (3.1) BS01 rna ? GO:0003735 ... P0CH08 37079644
    774559 8bip:Lm (3.1) BS02 ZN ? GO:0003735 ... P0CH08 37079644
    774560 8bip:Lo (3.1) BS01 rna ? GO:0002181 ... P0CX27 37079644
    774561 8bip:Lo (3.1) BS02 ZN ? GO:0002181 ... P0CX27 37079644
    774562 8bip:Lp (3.1) BS01 rna ? GO:0002181 ... P0CX25 37079644
    774563 8bip:Lp (3.1) BS02 ZN ? GO:0002181 ... P0CX25 37079644
    774564 8biq:A (2.8) BS01 AMP 6.2.1.1
    6.2.1.17
    6.2.1.2
    6.2.1.40
    GO:0003987 ... A4YDT1 N/A
    774565 8biq:B (2.8) BS01 6R9 6.2.1.1
    6.2.1.17
    6.2.1.2
    6.2.1.40
    GO:0003987 ... A4YDT1 N/A
    774566 8biq:C (2.8) BS01 AMP 6.2.1.1
    6.2.1.17
    6.2.1.2
    6.2.1.40
    GO:0003987 ... A4YDT1 N/A
    774567 8biq:D (2.8) BS01 AMP 6.2.1.1
    6.2.1.17
    6.2.1.2
    6.2.1.40
    GO:0003987 ... A4YDT1 N/A
    774568 8bir:A (2.4) BS01 SAH ? GO:0008168 ... Q7MY04 36963398
    774569 8bir:A (2.4) BS02 QOI ? GO:0008168 ... Q7MY04 36963398
    774570 8bir:B (2.4) BS01 SAH ? GO:0008168 ... Q7MY04 36963398
    774571 8bir:B (2.4) BS02 QOI ? GO:0008168 ... Q7MY04 36963398
    774572 8bis:A (2.266) BS01 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774573 8bis:A (2.266) BS02 2AG 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774574 8bis:A (2.266) BS03 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774575 8bis:C (2.266) BS01 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774576 8bis:C (2.266) BS02 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774577 8bit:A (3.1) BS01 6R9 6.2.1.1
    6.2.1.17
    6.2.1.2
    6.2.1.40
    GO:0003987 ... A4YDT1 N/A
    774578 8bit:A (3.1) BS02 COA 6.2.1.1
    6.2.1.17
    6.2.1.2
    6.2.1.40
    GO:0003987 ... A4YDT1 N/A
    774579 8bit:B (3.1) BS01 6R9 6.2.1.1
    6.2.1.17
    6.2.1.2
    6.2.1.40
    GO:0003987 ... A4YDT1 N/A
    774580 8bit:B (3.1) BS02 COA 6.2.1.1
    6.2.1.17
    6.2.1.2
    6.2.1.40
    GO:0003987 ... A4YDT1 N/A
    774581 8biu:A (1.899) BS01 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774582 8biu:A (1.899) BS02 2KT 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774583 8biu:A (1.899) BS03 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774584 8biu:G (1.899) BS01 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774585 8biu:G (1.899) BS02 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774586 8biv:A (2.22) BS01 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774587 8biv:A (2.22) BS02 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774588 8biv:E (2.22) BS01 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774589 8biv:E (2.22) BS02 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774590 8biw:A (1.981) BS01 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774591 8biw:A (1.981) BS02 2AG 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774592 8biw:A (1.981) BS03 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774593 8biw:E (1.981) BS01 2AG 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774594 8biw:E (1.981) BS02 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774595 8biw:E (1.981) BS03 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774596 8bix:A (1.59) BS01 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774597 8bix:A (1.59) BS02 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774598 8bix:C (1.59) BS01 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774599 8bix:C (1.59) BS02 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    774600 8biz:A (1.891) BS01 PLP 4.4.1.1 GO:0004123 ... B6K8Y1 36883335

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).